ID:

ssc_14

 Coordinate:

chrX:136189546-136189627 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-46.3 -45.8 -45.6

Sense Strand Reads

CATTCGAGAGGGTGAGGGGCACTGGGCGACTCCTTCACCTGAAAGCCCTGCTGGGTGCAGTGCCCTGCCCAGGCAGGTGCTGATCACTTAGTCTCTGGGTCAACAGTCCCTGCCTGGGTAGAGTAAGGCTCACCAAGAACATTCGTGTGGCCTCTGGAGCAGCGTTGAGGGTGGAGCTGCAG

**************************************************.(((..((..(((.(((((((((((((.((((...((((((...))))))...)))).))))))))))))).)))..))...)))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes		 SRR139076

testes		 SRR139075

testes		 SRR1274764

testes		 SRR066809

ovary
....................................................................................................CAACAGTCCCTGCCTGGGTAGA............................................................ 22 0 1 489.00 489 406 45 28 8 2
....................................................................................................CAACAGTCCCTGCCTGGGTAG............................................................. 21 0 1 331.00 331 262 31 31 6 1
....................................................................................................CAACAGTCCCTGCCTGGGTAGT............................................................ 22 1 1 178.00 178 168 2 3 5 0
....................................................................................................CAACAGTCCCTGCCTGGGTA.............................................................. 20 0 1 46.00 46 42 2 1 0 1
....................................................................................................CAACAGTCCCTGCCTGGGTAGAA........................................................... 23 1 1 38.00 38 28 3 4 3 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGAT........................................................... 23 1 1 25.00 25 22 1 1 1 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGAAT.......................................................... 24 1 1 15.00 15 14 0 1 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGAAA.......................................................... 24 2 1 8.00 8 8 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGATT.......................................................... 24 1 1 5.00 5 5 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAA............................................................. 21 1 1 2.00 2 1 0 1 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAT............................................................. 21 1 1 2.00 2 2 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGT............................................................... 19 0 1 2.00 2 1 0 1 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGAG........................................................... 23 0 1 2.00 2 2 0 0 0 0
.................................................................TGCCCAGGCAGGTGCTGATCAC............................................................................................... 22 0 1 2.00 2 1 0 1 0 0
....................................................................................................CAACAGTCTCTGCCTGGGTAGA............................................................ 22 1 1 2.00 2 2 0 0 0 0
....................................................................................................TAACAGTCCCTGCCTGGGTAGA............................................................ 22 1 1 2.00 2 0 2 0 0 0
.................................................................TGCCCAGGCAGGTGCTGATCACT.............................................................................................. 23 0 1 2.00 2 0 0 2 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGAGA.......................................................... 24 1 1 2.00 2 2 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGATTTT........................................................ 26 3 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCTTGCCTGGGTAG............................................................. 21 1 1 1.00 1 1 0 0 0 0
...................................................................................................TCAACAGTCCCTGCCTGGGTAGA............................................................ 23 0 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTTGA............................................................ 22 1 1 1.00 1 0 1 0 0 0
.................................................................TGCCCAGGCAGGTGCTGATCAT............................................................................................... 22 1 1 1.00 1 0 0 0 1 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGCA........................................................... 23 2 1 1.00 1 0 1 0 0 0
....................................................................................................CAACGGTCCCTGCCTGGGTAGA............................................................ 22 1 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGTGT.......................................................... 24 1 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCTTGCCTGGGTAGAT........................................................... 23 2 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGAAAT......................................................... 25 3 1 1.00 1 0 0 0 0 1
....................................................................................................CAACAGTCCCTGCCTGGGTAGATTT......................................................... 25 2 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGTCTGGGTAGA............................................................ 22 1 1 1.00 1 0 0 1 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGG............................................................ 22 1 2 1.00 2 2 0 0 0 0
....................................................................................................CAACAGTCCTTACCTGGGTAGA............................................................ 22 2 1 1.00 1 0 0 1 0 0
....................................................................................................CACCAGTCCCTGCCTGGGTAGA............................................................ 22 1 1 1.00 1 0 0 1 0 0
.................................................................TGCCCAGGCAGGTGCTGATCA................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
.....................................................................................................AACAGTCCCTGCCTGGGTAGA............................................................ 21 0 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGATA.......................................................... 24 2 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTAGGTAG............................................................. 21 1 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTATA............................................................ 22 1 1 1.00 1 1 0 0 0 0
....................................................................................................CGACAGTCCCTGCCTGGGTA.............................................................. 20 1 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGC............................................................ 22 1 1 1.00 1 0 1 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGAAC.......................................................... 24 2 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGTCTGGGTAG............................................................. 21 1 1 1.00 1 1 0 0 0 0
....................................................................................................AAACAGTCCCTGCCTGGGTAGA............................................................ 22 1 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGCCCCTGCCTGGGTAG............................................................. 21 1 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGTA........................................................... 23 2 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTATT............................................................ 22 2 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCTCTGCCTGGGTA.............................................................. 20 1 1 1.00 1 1 0 0 0 0
.......................................................................................TTAGTCTCTGGGTCAACAGTCCCTGCCTGGGTAGA............................................................ 35 0 1 1.00 1 0 0 0 1 0
....................................................................................................CAACAGTCCCTGCCTTGGTAGT............................................................ 22 2 1 1.00 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGTAA.......................................................... 24 3 2 0.50 1 1 0 0 0 0
......................................................................................................ACAGTCCCTGCCTGGGTAG............................................................. 19 0 2 0.50 1 0 0 0 1 0
....................................................................................................CAACAGTCCCTGCCTGGGCAG............................................................. 21 1 2 0.50 1 1 0 0 0 0
....................................................................................................GAACAGTCCCTGCCTGGGTAGA............................................................ 22 1 2 0.50 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTATTTT.......................................................... 24 3 2 0.50 1 1 0 0 0 0
....................................................................................................CAGCAGTCCCTGCCTGGGTAG............................................................. 21 1 2 0.50 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAAG............................................................ 22 2 2 0.50 1 0 0 1 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTAGTAG.......................................................... 24 3 4 0.50 2 2 0 0 0 0
....................................................................................................CAACAGTCCCTTCCTGGGTAGA............................................................ 22 1 2 0.50 1 0 1 0 0 0
.....................................................................................................AACAGTCCCTGCCTGGGTAG............................................................. 20 0 2 0.50 1 0 1 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGCAAA............................................................ 22 2 3 0.33 1 0 1 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGGAG............................................................. 21 1 3 0.33 1 0 1 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGCAGT............................................................ 22 2 5 0.20 1 1 0 0 0 0
....................................................................................................CAACAGTCCCTGCCTGGGTTTAT........................................................... 23 3 6 0.17 1 1 0 0 0 0

Anti-sense strand reads

GTAAGCTCTCCCACTCCCCGTGACCCGCTGAGGAAGTGGACTTTCGGGACGACCCACGTCACGGGACGGGTCCGTCCACGACTAGTGAATCAGAGACCCAGTTGTCAGGGACGGACCCATCTCATTCCGAGTGGTTCTTGTAAGCACACCGGAGACCTCGTCGCAACTCCCACCTCGACGTC

*********************************************.(((..((..(((.(((((((((((((.((((...((((((...))))))...)))).))))))))))))).)))..))...)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:45 AM