ID:

ssc-mir-9853-1

 Coordinate:

chr12:57502420-57502489 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

AGATTTATCCTTCCAAGTTCAAAGTCCAGGCAGGACAGGGGACACCTCCCACTGCAGGGCTGTCTAGGCCGTCGGGGAGTGGGGGCGGTGCACGCAACGGTCAGCGGGCAGGTGTGTGGCCCTCCTCCAGCTAATGGGAAACGGCCCCATATCCCACAGTTGATAAAACT

***********************************(((((((....)))).)))...((((.....)))).....((((.((((((...((((((....(((....)))..)))))).)))))))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes
...........................................................................................ACGCAACGTTCATCGG............................................................... 16 2 20 0.20 4 3 1

Anti-sense strand reads

TCTAAATAGGAAGGTTCAAGTTTCAGGTCCGTCCTGTCCCCTGTGGAGGGTGACGTCCCGACAGATCCGGCAGCCCCTCACCCCCGCCACGTGCGTTGCCAGTCGCCCGTCCACACACCGGGAGGAGGTCGATTACCCTTTGCCGGGGTATAGGGTGTCAACTATTTTGA

***********************************(((((((....)))).)))...((((.....)))).....((((.((((((...((((((....(((....)))..)))))).)))))))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139076

testes		 SRR066810

testes
.......AGGAAGGTTCAAGTTTCAGGTCCGTCCTGT..................................................................................................................................... 30 0 1 1.00 1 1 0
............................................................................................................................................TGCCGGGGTATAGGGTGTCAACTAT..... 25 0 1 1.00 1 0 1
....AATAGGAAGGTTCAAGTTTCAGGTCCGT.......................................................................................................................................... 28 0 1 1.00 1 1 0

Generated: 09/01/2015 at 11:25 AM