ID:

ssc-mir-9852

 Coordinate:

chr5:49477033-49477128 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

AGGCCCCTTCACTGAGAGTGACAAGAACTAATCTTCTGCATGTCAAAACACATCTCCTTGGCTTCTTTTCTTCCAGAAACCTCCACCTCCCGCCTCCTTCCGACCACATTAGAACCTGGGATCGGGATCGTGGGACCAAATTTGCTTTTGATTCTCTCCAGGCAGCCATTTAGCTGTCTTTCTCTTTCATTGCTCT

***********************************((.....((((((..((.....((((..........................((((((....((((((((.((........)))).))))))..))))))))))...)).))))))........))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes		 SRR066809

ovary
.....................................................................................................................GCGATCGGGGTCGTGGGACCA.......................................................... 21 2 1 1.00 1 1 0
.........................................................................................................................TCGGGGTCGTGGGACC........................................................... 16 1 14 0.14 2 1 1
.......................................................................................................................GATTGGGGTCGTGGGACC........................................................... 18 2 20 0.10 2 2 0
.......................................................................................................................GATCGGGATCGTGCGGC............................................................ 17 2 20 0.05 1 0 1

Anti-sense strand reads

TCCGGGGAAGTGACTCTCACTGTTCTTGATTAGAAGACGTACAGTTTTGTGTAGAGGAACCGAAGAAAAGAAGGTCTTTGGAGGTGGAGGGCGGAGGAAGGCTGGTGTAATCTTGGACCCTAGCCCTAGCACCCTGGTTTAAACGAAAACTAAGAGAGGTCCGTCGGTAAATCGACAGAAAGAGAAAGTAACGAGA

***********************************((.....((((((..((.....((((..........................((((((....((((((((.((........)))).))))))..))))))))))...)).))))))........))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:37 AM