ID:

ssc-mir-9848

Coordinate:

chr7:58088717-58088800 +

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

AGTTAACTCTCAGGGTCGCGCCAGAATACCCTGGGGGTTCCCCTGTACCAAATGTTTGGTAGCGAACTGATTCCAGCGCCCAGGTCAAGTTCACAGCGGTCCCTGCTCGAGACGTCGGATGTGCCCCAGAAACCGACGCCGCCGTTCGGGGAGCGTCCCAATCACAACTCGACTAAGCAGGATC

***********************************((..((.(((((((((....))))))..(((((....((........))...))))).))).))..))...(((((.((.(((.(((.............)))))).)))))))***********************************
Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary
SRR066810

testes
......................................................................................................CGGCTCGTCACGTCGGATGTG............................................................. 21 3 3 0.33 1 1 0
...........................................................................................................CGATACGTCGGATGTGA............................................................ 17 2 15 0.07 1 0 1

Anti-sense strand reads

TCAATTGAGAGTCCCAGCGCGGTCTTATGGGACCCCCAAGGGGACATGGTTTACAAACCATCGCTTGACTAAGGTCGCGGGTCCAGTTCAAGTGTCGCCAGGGACGAGCTCTGCAGCCTACACGGGGTCTTTGGCTGCGGCGGCAAGCCCCTCGCAGGGTTAGTGTTGAGCTGATTCGTCCTAG

***********************************((..((.(((((((((....))))))..(((((....((........))...))))).))).))..))...(((((.((.(((.(((.............)))))).)))))))***********************************
Read size # Mismatch Hit Count Total Norm Total SRR139075

testes
SRR066809

ovary
.......................................................................AGGTCGCGGGTCCAGTTCA.............................................................................................. 19 0 1 1.00 1 1 0
..........................................................................................................................................................CAGGTCTAGTGTTGAGCTG........... 19 2 7 0.14 1 0 1
...................................................................................................AGGGACGAGCTAGGCAGC................................................................... 18 2 11 0.09 1 0 1

Generated: 09/01/2015 at 11:40 AM