ID:

ssc-mir-9845-5

 Coordinate:

chr17:69657802-69657885 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

CCTTGGGGTGGTGTGAACCCGCGGCCCTTTCTTCCATTCTTGTCCACCACCACTAGGGCCTGAACCCAGATCGGCCCGGGGTCCTTTGTGTGCAGGCACGCCCCCCTGGGTCTCACTGTGGCCAGGCCACAGCACGAGACAGCATAATCAGGGTGTCTCGAGCTGGTGAGTCATTTTGCGAGGA

***********************************..((((((.........((..((((((..(((((...(((((((((.....(((((....)))))...)))))))))...))).)).))))))..)).))))))..........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1274763

ovary
.....................................................................................................................................................AGGATGTCTCGAGCT.................... 15 1 20 0.05 1 1

Anti-sense strand reads

GGAACCCCACCACACTTGGGCGCCGGGAAAGAAGGTAAGAACAGGTGGTGGTGATCCCGGACTTGGGTCTAGCCGGGCCCCAGGAAACACACGTCCGTGCGGGGGGACCCAGAGTGACACCGGTCCGGTGTCGTGCTCTGTCGTATTAGTCCCACAGAGCTCGACCACTCAGTAAAACGCTCCT

***********************************..((((((.........((..((((((..(((((...(((((((((.....(((((....)))))...)))))))))...))).)).))))))..)).))))))..........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139076

testes
..........................................................GAAGTTGGGTCTAGCCGGGCA......................................................................................................... 21 3 14 0.07 1 1 0
....................................................................................................................ACACCGGTCCTGTGTAGTGATC.............................................. 22 3 20 0.05 1 0 1

Generated: 09/01/2015 at 11:30 AM