ID:

ssc-mir-9843

 Coordinate:

chr8:122371904-122371984 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.8 -41.7 -41.5

Sense Strand Reads

AAATCCCGTGTGTGTGTCTGTGTATGTGTGTTGATCTCAGTTTATACTCTTACACAGCTTTCCAGAGGTTTCCAGCTTATAGGATATTCATATGGTAGTTCTGTGAACTAGAAACCTCTGGAAAGTGGTGTACATTTTACTTCCACCCACAAGTCAAGTTTCAGCTCACTTAACATCCATT

***********************************...............(((((.((((((((((((((((.((.(((((((((..((....))..))))))))).)).)))))))))))))))).)))))..............*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR139076

testes		 SRR066809

ovary		 SRR1274763

ovary		 SRR1274764

testes		 SRR066810

testes
...................................................................................................TCTGTGAACTAGAAACCTCTGG............................................................ 22 0 1 275.00 275 217 24 15 6 9 4
...................................................................................................TCTGTGAACTAGAAACCTCTG............................................................. 21 0 1 41.00 41 35 5 0 1 0 0
...................................................................................................TCTGTGAACTAGAAACCTCTGGA........................................................... 23 0 1 39.00 39 27 2 4 6 0 0
...................................................................................................TCTGTGAACTAGAAACCTCT.............................................................. 20 0 1 25.00 25 23 2 0 0 0 0
...................................................................................................TCTGTGAACTAGAAACCTCTGGT........................................................... 23 1 1 6.00 6 4 0 0 0 0 2
...................................................................................................TCTGTGAACTAGAAACCTC............................................................... 19 0 1 6.00 6 1 0 0 3 2 0
...................................................................................................TCTGTGAACTAGAAACCTTTGG............................................................ 22 1 1 4.00 4 4 0 0 0 0 0
....................................................................................................CTGTGAACTAGAAACCTCTGGA........................................................... 22 0 1 4.00 4 2 0 1 1 0 0
...................................................................................................TCTGTGAACTAGAAACCTCTGGAT.......................................................... 24 1 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCTGTGAACTAGAAACCTCTGA............................................................ 22 1 1 3.00 3 1 2 0 0 0 0
...................................................................................................TCTGTGAACTAGAAACCTCTGT............................................................ 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCTGTGAACTAGAAACCTCTGGTAT......................................................... 25 2 1 2.00 2 1 1 0 0 0 0
...................................................................................................TCTGCGAACTAGAAACCTCTGG............................................................ 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCTGTGAACTAGAAACCTCTGGAA.......................................................... 24 0 1 2.00 2 1 0 0 0 0 1
...................................................................................................TCTGTGAACTAGAAACCTCTGGTA.......................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCTGTGAACTAGAAACCTCCGG............................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCTGTGAACTAGAAACTTCTG............................................................. 21 1 2 1.00 2 0 2 0 0 0 0
...................................................................................................TCTGTGAACTAAAAACCTCTGG............................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCTGTGAACTAGAAATCTCTGG............................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................GCTGTGAACTAGAAACCTCT.............................................................. 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCTGTGAACTGGAAACCTCTGGA........................................................... 23 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................CTGTGAACTAGAAACCTCTGG............................................................ 21 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCTGTGAACTAGACACCTCTGG............................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCTGTGAACTAGAAACCT................................................................ 18 0 1 1.00 1 0 0 0 1 0 0
.....................................................................................................TGTGAACTAGAAACCTCTGG............................................................ 20 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCTGTGAACTAGAAACCTCAGG............................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCTGTGAACTAGAAACCTCTGAA........................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TTCTGTGAACTAGAAACCTCTGG............................................................ 23 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCTGTGAACTAGAAACC................................................................. 17 0 2 0.50 1 1 0 0 0 0 0

Anti-sense strand reads

TTTAGGGCACACACACAGACACATACACACAACTAGAGTCAAATATGAGAATGTGTCGAAAGGTCTCCAAAGGTCGAATATCCTATAAGTATACCATCAAGACACTTGATCTTTGGAGACCTTTCACCACATGTAAAATGAAGGTGGGTGTTCAGTTCAAAGTCGAGTGAATTGTAGGTAA

***********************************...............(((((.((((((((((((((((.((.(((((((((..((....))..))))))))).)).)))))))))))))))).)))))..............*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:41 AM