ID:

ssc-mir-9841

 Coordinate:

chr7:4037102-4037189 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-58.6 -58.4 -58.4

Sense Strand Reads

CTGCAGTCACAGGGAAGCCCAGCACGGAGGATTGATTGGCAAGGAATTTGCAGGAAGTGGGTGGGTGCTCGATGCTAGATGGGCACAGACAATGGTAATAAATAACATCTAGCATCGAGCACCCGCCTACTAACTGGCGAACTTTCTAACGATGATGACAGTAGTGTGGCTTTACAGTCCCAGGGAAA

*********************************************.(((((((..((((((((((((((((((((((((((........................))))))))))))))))))))))))))..)).)))))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139075

testes		 SRR1274763

ovary		 SRR1274764

testes		 SRR139076

testes
...........................................................................................................TCTAGCATCGAGCACCCGCCT............................................................ 21 0 1 22.00 22 13 6 1 0 2
...........................................................................................................TCTAGCATCGAGCACCCGCCTAT.......................................................... 23 1 1 3.00 3 3 0 0 0 0
...........................................................................................................TCTAGCATCGAGCACCCGCCTTT.......................................................... 23 2 1 3.00 3 1 0 2 0 0
...........................................................................................................TCTAGCATCGAGCACCCGCCTT........................................................... 22 1 1 2.00 2 2 0 0 0 0
...........................................................................................................TCTAGCATCGAGCACCCGCCATT.......................................................... 23 3 1 2.00 2 2 0 0 0 0
...........................................................................................................TCTAGCATCGAGCACCCGC.............................................................. 19 0 1 2.00 2 0 0 1 1 0
...........................................................................................................TCTAGCATCGAGCACCCGCC............................................................. 20 0 1 2.00 2 1 0 0 1 0
...........................................................................................................TCTAGCATCGAGCACCCGCCTTA.......................................................... 23 2 1 1.00 1 1 0 0 0 0
...........................................................................................................TCTAGCATCGAGCACCCGCTTAT.......................................................... 23 2 1 1.00 1 0 1 0 0 0
............................................................GTAGGTGCTCGATGCTAGATGGGCA....................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
............................................................GTGGGTGCTCGATGCTAGATG........................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...........................................................................................................TCTAGCATCGAGCACCCGTCA............................................................ 21 2 1 1.00 1 0 1 0 0 0
............................................................GTGGGAGCTCGATGCTAGATG........................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
...........................................................................................................TCTAGCATCGAGCACCCGCCAAA.......................................................... 23 2 1 1.00 1 1 0 0 0 0
............................................................GTGGGTGCTCGATGCTAGATGA.......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
...........................................................................................................TCTAGCATCGAGCACCCGCCAA........................................................... 22 1 1 1.00 1 1 0 0 0 0
...........................................................................................................TCTAGCATCGAGCACCCGCCAGCC......................................................... 24 3 1 1.00 1 0 1 0 0 0
..........................................................................................................ATCTAGCATCGAGCACCCGCCTAT.......................................................... 24 1 1 1.00 1 0 0 1 0 0
...........................................................................................................TCTAGCATCGAGCACCCGCCTAA.......................................................... 23 1 1 1.00 1 0 0 1 0 0
...........................................................................................................TCTAGCATCGAGCACCCGCAAT........................................................... 22 3 1 1.00 1 0 0 0 1 0
............................................................GTAGGTGCTCGATGCTAGATG........................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
...........................................................................................................TCTAGCATCGAGCACCCGCCTATT......................................................... 24 1 1 1.00 1 1 0 0 0 0
...........................................................................................................TCTAGCGTCGAGCACCCGCCTTT.......................................................... 23 3 1 1.00 1 1 0 0 0 0
...........................................................................................................TCTAGCATCGAGCACCCGCCTTTT......................................................... 24 2 1 1.00 1 1 0 0 0 0
............................................................................................................CTAGCATCGAGCACCCGCCTTT.......................................................... 22 2 1 1.00 1 1 0 0 0 0
..........................................................................................................ATCTAGCATCGAGCACCCGCCT............................................................ 22 0 1 1.00 1 0 1 0 0 0
...........................................................................................................TCTAGCATCGAGCACCCGCAAA........................................................... 22 2 1 1.00 1 1 0 0 0 0
...........................................................................................................TCTAGCATCGAGCACCCGT.............................................................. 19 1 1 1.00 1 0 0 1 0 0
..........................................................................................................ATCTAGCATCGAGCACCCTCC............................................................. 21 1 2 0.50 1 0 1 0 0 0

Anti-sense strand reads

GACGTCAGTGTCCCTTCGGGTCGTGCCTCCTAACTAACCGTTCCTTAAACGTCCTTCACCCACCCACGAGCTACGATCTACCCGTGTCTGTTACCATTATTTATTGTAGATCGTAGCTCGTGGGCGGATGATTGACCGCTTGAAAGATTGCTACTACTGTCATCACACCGAAATGTCAGGGTCCCTTT

*********************************************.(((((((..((((((((((((((((((((((((((........................))))))))))))))))))))))))))..)).)))))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes
...........................................................CCTCCCACGAGCTACGATCTA............................................................................................................ 21 1 2 0.50 1 1

Generated: 09/01/2015 at 11:39 AM