ID:

ssc-mir-9828-1

 Coordinate:

chr12:61818217-61818314 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.8 -41.6 -41.6
mature

  1. ssc-mir-9828-1  chr12:61818253-61818283 +
  2. ssc-mir-9828-2  chr12:61821340-61821370 +
  3. ssc-mir-9828-3  chr12:61824418-61824448 +
star

Sense Strand Reads

CCCGTGGTGTTCTCTCAAGAGGTCTCCTGACTCTCGGTGCCTAGAGGTCCATGTGGGAGCCGCCCGGCTTCCCGAGAGACACCTGGTATGAATGCCTGATCGAAAGAGAGGTCGAGTGGTTTCAGGCCGGTCGCTCGATAGAAAGAAAGGGCGCACAGACATTCCCCGTGGCTCCCAGGGTGAAAGGTCTGTCTTGGT

***********************************.((((((.....((.....(((((((....)))))))((((.(((...((((.((((.(((...((((........))))..))))))).))))))).))))...))......)))))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066810

testes
...........................................................................TAGACACCTGGTATGAATGGCTG.................................................................................................... 23 2 3 0.33 1 1 0
......................................................................................TATGAATGCCTGATCGAAAGAGAGGTCGAGT................................................................................. 31 0 3 0.33 1 0 1
....................................................................TTCCTGATAGACACCTGGTATGAATGGC...................................................................................................... 28 3 5 0.20 1 1 0

Anti-sense strand reads

GGGCACCACAAGAGAGTTCTCCAGAGGACTGAGAGCCACGGATCTCCAGGTACACCCTCGGCGGGCCGAAGGGCTCTCTGTGGACCATACTTACGGACTAGCTTTCTCTCCAGCTCACCAAAGTCCGGCCAGCGAGCTATCTTTCTTTCCCGCGTGTCTGTAAGGGGCACCGAGGGTCCCACTTTCCAGACAGAACCA

***********************************.((((((.....((.....(((((((....)))))))((((.(((...((((.((((.(((...((((........))))..))))))).))))))).))))...))......)))))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes
........................AGGACTGAGAGCCACGGATCTCCAGGT................................................................................................................................................... 27 0 3 0.33 1 1
.........................GGACTGAGAGCCACGGAT........................................................................................................................................................... 18 0 5 0.20 1 1

Generated: 09/01/2015 at 11:26 AM