ID:

ssc-mir-9810

 Coordinate:

chr4:90746011-90746105 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-50.5 -50.4 -50.1 -50.0

Sense Strand Reads

GGTAGTTGGAAAGAGGTCAGGCAGAGCTACGGGAAGGGCACCCGGAGGAAGAGGAGGGCGAGAGGCGTTGAGGCAGGGGAGAGTGACGAGGTGCCCTTCATTGTCAGCCAGGGACGAGCACGCGGCCACTCTCCCCTCACTCCGACTGCCCACGATCACTCGTCCGCAGAAATGTCAGCCGCCGGCGCCCGGGGC

***********************************...................((((((...(((((((((..(((((((((((.((..((((......(((((.......))))))))).))..)))))))))))..))).))).)))..)).)).))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes
.............AGGTCAGGCAGAGCTACG.................................................................................................................................................................... 18 0 1 3.00 3 3
.....................CAGAGCTACGGGAAGGGC............................................................................................................................................................ 18 0 1 2.00 2 2
..........AAGAGGTCAGGCAGAGCTAC..................................................................................................................................................................... 20 0 1 2.00 2 2
.........AAAGAGGTCAGGCAGAGCTA...................................................................................................................................................................... 20 0 1 1.00 1 1
..........................................CGGAGGAAGAGGAGGGCG....................................................................................................................................... 18 0 1 1.00 1 1
.................................AAGGGCACCCGGAGGAAGAGG............................................................................................................................................. 21 0 1 1.00 1 1
............GAGGTCAGGCAGAGCTAC..................................................................................................................................................................... 18 0 1 1.00 1 1
..................................................................................................................CGAGCACGCGGCCACTC................................................................ 17 0 1 1.00 1 1
............GAGGTCAGGCAGAGCTACG.................................................................................................................................................................... 19 0 1 1.00 1 1
.............AGGTCAGGCAGAGCTACGG................................................................................................................................................................... 19 0 1 1.00 1 1

Anti-sense strand reads

CCATCAACCTTTCTCCAGTCCGTCTCGATGCCCTTCCCGTGGGCCTCCTTCTCCTCCCGCTCTCCGCAACTCCGTCCCCTCTCACTGCTCCACGGGAAGTAACAGTCGGTCCCTGCTCGTGCGCCGGTGAGAGGGGAGTGAGGCTGACGGGTGCTAGTGAGCAGGCGTCTTTACAGTCGGCGGCCGCGGGCCCCG

***********************************...................((((((...(((((((((..(((((((((((.((..((((......(((((.......))))))))).))..)))))))))))..))).))).)))..)).)).))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes
........................................................................................................................................AGCGAGGCTGACGAGTGC......................................... 18 2 14 0.07 1 1

Generated: 09/01/2015 at 11:35 AM