ID:

ssc-mir-9806-3

 Coordinate:

chr9:101340155-101340227 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.5 -37.5 -37.0
mature

  1. ssc-mir-9806-1  chr2:134068679-134068705 +
  2. ssc-mir-9806-2  chr9:101337108-101337134 -
  3. ssc-mir-9806-3  chr9:101340189-101340215 -
  4. ssc-mir-9806-4  chr9:101343277-101343303 -
  5. chr9:101348027-101348053 -
star

Sense Strand Reads

GGCAGCGTGACGCCCGACCAGACGTCCGTATCGCCGGGGTGTGCGCCTGTTGCTTTCTTTCCTCGCTGAGTAGTCTGGACCCACGTGTGGCAGGCAGATACGGTCTGGCCAGGAGCCGAGGCCACGCTCCAGCCGTTCCGAGCCCAGGCTCGTACAGGAGACCCTCTGCCAGC

***********************************((((((((.((((...((((.((..((..((((.((.(((((...(((....))))))))..)).))))..))..))))))..))))))))))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes
..............................................................TCGCTGAGTAGTCTGGACCCACGTGTG.................................................................................... 27 0 5 0.20 1 1
..................................................................TGAGTAGTCTGGACCCACGTGTGGCA................................................................................. 26 0 5 0.20 1 1
..................................................................TGAGTAGTCTGGACCCACGTGTGGCAA................................................................................ 27 1 5 0.20 1 1
............................................................................................GGCAGATACGGTCTGGCCGGGAGC......................................................... 24 1 5 0.20 1 1
..............................................................TCGCTGAGTAGTCTGGACCCACGTGTGGCA................................................................................. 30 0 5 0.20 1 1
.................................................................CTGAGTAGTCTGGACCCACGTGTGGCAG................................................................................ 28 0 5 0.20 1 1
.......................................................TCTTTCCTCGCTGAGTAGTCTGGAC............................................................................................. 25 0 5 0.20 1 1

Anti-sense strand reads

CCGTCGCACTGCGGGCTGGTCTGCAGGCATAGCGGCCCCACACGCGGACAACGAAAGAAAGGAGCGACTCATCAGACCTGGGTGCACACCGTCCGTCTATGCCAGACCGGTCCTCGGCTCCGGTGCGAGGTCGGCAAGGCTCGGGTCCGAGCATGTCCTCTGGGAGACGGTCG

***********************************((((((((.((((...((((.((..((..((((.((.(((((...(((....))))))))..)).))))..))..))))))..))))))))))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1274764

testes		 SRR139075

testes		 SRR066810

testes
......................................................................................................................TCCGGTGCGAGGTCGGCAAGGCTCGGGTCCGAG...................... 33 0 4 0.25 1 1 0 0
..................................................................................................................................TCGGCAAGACTCGGGTCCGAGCAT................... 24 1 4 0.25 1 0 1 0
.............................................................................................................GTCCTCGGCTCCGGTGCGAGGTCGGCAAGGC................................. 31 0 5 0.20 1 1 0 0
..............GCTGGGCAGCAGGCATAGC............................................................................................................................................ 19 2 5 0.20 1 0 0 1
..................................................................................................................CGGCTCCGGTGCGAGGTCGGCAAGGCT................................ 27 0 5 0.20 1 0 1 0
....CGCACTGCGGGTCCGTCTGCAG................................................................................................................................................... 22 3 11 0.09 1 0 0 1
...............CTGGGCAGCAGGCATA.............................................................................................................................................. 16 2 20 0.05 1 0 0 1

Generated: 09/01/2015 at 11:43 AM