ID:

ssc-mir-9799

 Coordinate:

chr16:39346543-39346629 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

tcacagactaataggaaaaacagagagccaaataagacaaataagacaaatagagtcaaagttctgcggggtgggggatgggtcaagaCATTTTGTGGGTTGGTTCTCATTGCTTTGATCGTCTGGCTGTGATACTTGTATAGGATTTTGGCAAAATATTTGACAATTATTTTTAGCATTAGTGTTT

***********************************...................((((((((((((((.(((.((.....(((((((.((....(((((......))))))).)))))))..)).))).)).........))))))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Anti-sense strand reads

tGTGTgTGtTTtTggTTTTTGTgTgTgGGTTTtTTgTGTTTtTTgTGTTTtTgTgtGTTTgttGtgGggggtgggggTtgggtGTTgTGTAAAACACCCAACCAAGAGTAACGAAACTAGCAGACCGACACTATGAACATATCCTAAAACCGTTTTATAAACTGTTAATAAAAATCGTAATCACAAA

***********************************...................((((((((((((((.(((.((.....(((((((.((....(((((......))))))).)))))))..)).))).)).........))))))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR139076

testes		 SRR066809

ovary		 SRR066810

testes
..................................................................................................................AACTAGCAGCCTGACA......................................................... 16 2 20 8.55 171 134 29 8 0
...................................................................................................................ACTAGCAGCCTGACACTA...................................................... 18 2 11 1.00 11 9 2 0 0
.................................................................................................................AAACTAGCAGCCTGACA......................................................... 17 2 20 0.75 15 0 13 1 1
....................................................................................................................CTAGCAGCCTGACACTTTGA................................................... 20 3 20 0.35 7 0 0 5 2
.................................................................................................................AAACTAGCAGCCTGACACTA...................................................... 20 2 3 0.33 1 1 0 0 0
..................................................................................................................AACTAGCAGCCTGACACTA...................................................... 19 2 3 0.33 1 1 0 0 0
..................................................................................................................AACTAGCAGCCTGACACAA...................................................... 19 3 20 0.15 3 3 0 0 0
.................................................................................................................AAACTAGCAGCCTGACAC........................................................ 18 2 14 0.14 2 2 0 0 0
................................................................................................................GAAACTAGCAGCCTGACACAA...................................................... 21 3 13 0.08 1 1 0 0 0
................................................................................................................GAAACTAGCAGCCTGACA......................................................... 18 2 19 0.05 1 0 1 0 0
..................................................................................................................AACTAGCAGCCTGACACTAG..................................................... 20 3 19 0.05 1 0 1 0 0
..................................................................................................................AACTAGCAGCCTGACAATA...................................................... 19 3 20 0.05 1 0 1 0 0
....................................................................................................................CTAGCAGCCCGACATTTTG.................................................... 19 3 20 0.05 1 0 0 0 1
.................................................................................................................AAACTAGCAGCCTGACACAA...................................................... 20 3 20 0.05 1 1 0 0 0
...................................................................................................................ACTAGCAGCCCGACAA........................................................ 16 2 20 0.05 1 0 1 0 0
.................................................................................................................AAACTAGCAGCCTGACAATA...................................................... 20 3 20 0.05 1 1 0 0 0
..................................................................................................................AACTAGCAGCCCGACAA........................................................ 17 2 20 0.05 1 1 0 0 0

Generated: 09/01/2015 at 11:28 AM