ID:

ssc-mir-9796

 Coordinate:

chr3:6616431-6616522 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-27.9 -27.8 -27.8

Sense Strand Reads

GTCGGGAGTCCAACCCAACCGGGGACTGTCAGGATCCCGAAATTTCTCGAGGGCATTTTAGGCGGTTCCGTTATGAGGAAGTGGCCGGACCCGAAGAGGCGCTGAGCCGGCTCAGGGAACTTTGTCGTCGGTGGCTGAGGCCCGAAATGCACTCGAAAGAGCAGATCCTAGAGCTGCTGGTGCTGGAGCAGT

**********************************************************..((((((((((..((((.(((((..((.((.((.....(((.....))))).)).))..))))).))))))).))))...)))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139076

testes		 SRR1274764

testes		 SRR066810

testes		 SRR139075

testes
......................................................................................................................ACTTTGTCGTCGGTGGCTGAGGCCCGAAA............................................. 29 0 1 2.00 2 0 2 0 0
......................................GAAATTTCTCGAGGGCATTTTAGGCGG............................................................................................................................... 27 0 1 2.00 2 2 0 0 0
.......................................AAATTTCTCGAGGGCATTTTAGGCGG............................................................................................................................... 26 0 1 2.00 2 2 0 0 0
.........................................................................TGAGGAAGTGGCCGGACCCGAAGAGGC............................................................................................ 27 0 1 1.00 1 1 0 0 0
.......................................AAATTTCTCGAGGGCATTTTAGGCGGT.............................................................................................................................. 27 0 1 1.00 1 1 0 0 0
...................................................................................GCCGGACCCGAAGAGGCGCT......................................................................................... 20 0 1 1.00 1 0 0 0 1
......................................................................................................................ACTTTGTCGTCGGTGGCTGAGGCCCGAAATT........................................... 31 1 1 1.00 1 0 1 0 0
...............................................................................................................................TCGGTGGCTGAGGCCCGAAATGCACTCGAA................................... 30 0 1 1.00 1 0 1 0 0
........................................AATTTCTCGAGGGCATTTTAGGCGGTT............................................................................................................................. 27 0 1 1.00 1 1 0 0 0
.....................................................................................................................AACTTTGTCGTCGGTGGCTGAGGCCCGAAA............................................. 30 0 1 1.00 1 0 1 0 0
......................................................................................................................ACTTTGTCGTCGGTGGCTGAGGCCCGAAATGCAC........................................ 34 0 1 1.00 1 0 1 0 0
.........................................................................TGAGGAAGTGGCCGGACCCGAAGAGGCGC.......................................................................................... 29 0 1 1.00 1 1 0 0 0
.........................................................................................................GCCGGCTCAGGGAACTTTGTCGTCGG............................................................. 26 0 1 1.00 1 0 0 1 0
...........AACCCAACCGGGGACTGTCAGG............................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0
..........................................................................................................................TGTCGTCGGTGGCTGAGGCCCGAA.............................................. 24 0 1 1.00 1 0 0 1 0
.......................................AAATTTCTCGAGGGCATTTTAGGCGGTT............................................................................................................................. 28 0 1 1.00 1 1 0 0 0

Anti-sense strand reads

CAGCCCTCAGGTTGGGTTGGCCCCTGACAGTCCTAGGGCTTTAAAGAGCTCCCGTAAAATCCGCCAAGGCAATACTCCTTCACCGGCCTGGGCTTCTCCGCGACTCGGCCGAGTCCCTTGAAACAGCAGCCACCGACTCCGGGCTTTACGTGAGCTTTCTCGTCTAGGATCTCGACGACCACGACCTCGTCA

**********************************************..((((((((((..((((.(((((..((.((.((.....(((.....))))).)).))..))))).))))))).))))...)))....********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes
..........................................................................................................GGCCGAGTCCCTTGAAACAGC................................................................. 21 0 1 1.00 1 1

Generated: 09/01/2015 at 11:33 AM