ID:

ssc-mir-9788-2

 Coordinate:

chr12:20428414-20428511 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.9 -33.2 -33.1
mature

  1. ssc-mir-9788-1  chr12:20363796-20363818 +
  2. ssc-mir-9788-2  chr12:20428424-20428446 -
star

  1. ssc-mir-9788-1  chr12:20363761-20363781 +
  2. ssc-mir-9788-2  chr12:20428461-20428481 -

Sense Strand Reads

CCGGGATCGCCAGACCAACCACTGCTACATCGCCATCCTCAACATCATCCAGGGGGAGGTGGACCCCACCCAGGTAGGTGCGGCCCCTTCGTTCTACCCCCGGAGCCCACAGGGGTAGAGGAGAGGCTACCACCACCACGCCTGTGCCCGCCCCAGGTCCACAAGAGCCTGCAGCGGATCCGGGAACGGAAGCTGGCC

*****************************************************************.....(((((.((((.((((.((((..((((((((.((...))...)))))))))))).)))).....))))..))))).........********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066809

ovary		 SRR139076

testes		 SRR1274764

testes		 SRR066810

testes		 SRR1274763

ovary
...................................................................................................................TAGAGGAGAGGCTACCACCACCA............................................................ 23 0 2 70.00 140 133 3 4 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCGT.............................................................. 21 2 2 27.50 55 55 0 0 0 0 0
....................................................................................................................AGAGGAGAGGCTACCACCACCA............................................................ 22 0 2 20.00 40 38 0 2 0 0 0
..................................................................................................................GTAGAGGAGAGGCTACCACCACCA............................................................ 24 0 2 3.50 7 7 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCA............................................................... 20 0 2 3.50 7 6 0 0 1 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCACCGT........................................................... 24 2 2 3.00 6 6 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCATCA............................................................ 23 1 2 2.00 4 4 0 0 0 0 0
..................................................................................................................GTAGAGGAGAGGCTACCACCGT.............................................................. 22 2 2 2.00 4 4 0 0 0 0 0
....................................................................................................................AGAGGAGAGGCTACCACCGT.............................................................. 20 2 4 2.00 8 8 0 0 0 0 0
..................................................................................................................GTAGAGGAGAGGCTACCACCATTT............................................................ 24 3 2 1.50 3 3 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCACCC............................................................ 23 1 2 1.50 3 3 0 0 0 0 0
..................................................................................................................GTAGAGGAGAGGCTACCACCA............................................................... 21 0 2 1.50 3 3 0 0 0 0 0
..................................................................................................................GTAGAGGAGAGGCTACCACCATTA............................................................ 24 2 2 1.50 3 3 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCAGT............................................................. 22 2 3 1.00 3 3 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCAA.............................................................. 21 1 2 1.00 2 0 0 0 1 0 1
................................................................................CGGCCCCTTCGTTCTACCCCC................................................................................................. 21 0 2 1.00 2 2 0 0 0 0 0
...................................................................................................................CAGAGGAGAGGCTACCACCACCA............................................................ 23 1 2 1.00 2 2 0 0 0 0 0
....................................................................................................................AGAGGAGAGGCTACCACCACA............................................................. 21 1 2 1.00 2 2 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCACCAG........................................................... 24 1 2 1.00 2 0 2 0 0 0 0
...................................................................................................................TAGAGGAGCGGCTACCACCACCA............................................................ 23 1 2 1.00 2 2 0 0 0 0 0
..................................................................................................................GTAGAGGAGAGGCTACCACCAT.............................................................. 22 1 2 1.00 2 2 0 0 0 0 0
....................................................................................................................AGAGGAGAGGCTACCACCACGT............................................................ 22 2 2 1.00 2 2 0 0 0 0 0
..................................................................................................................GTAGAGGAGAGGCTACCACCAA.............................................................. 22 1 2 1.00 2 2 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCACGT............................................................ 23 2 2 1.00 2 2 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCACCAA........................................................... 24 1 2 1.00 2 0 2 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCATGT............................................................ 23 3 2 0.50 1 1 0 0 0 0 0
..............................................................................TGCGGCCCCTTCGTTCTACCCC.................................................................................................. 22 0 2 0.50 1 0 0 0 0 1 0
...................................................................................................................TAGAGGAGAGGCTACCACCACCTA........................................................... 24 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................................AGAGTAGAGGCTACCACCCCCA............................................................ 22 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................................AGAGGAGAGGCTACCACCACCAA........................................................... 23 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCCT.............................................................. 21 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCCCCA............................................................ 23 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCACCATT.......................................................... 25 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................................AGAGGAGAGGCTACCACCAC.............................................................. 20 0 2 0.50 1 1 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCAAA............................................................. 22 2 2 0.50 1 0 1 0 0 0 0
.....................................................................................................................GAGGAGAGGCTACCACCACCA............................................................ 21 0 2 0.50 1 1 0 0 0 0 0
...................................................................................................................TGGAGGAGAGGCTACCACCACCA............................................................ 23 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................................AGAGGAGAGGCTACCACCACCC............................................................ 22 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................................AGAGGAGAGGCTACCACCCCCA............................................................ 22 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................................AGAGGAGGGGCTACCACCACCA............................................................ 22 1 2 0.50 1 1 0 0 0 0 0
..................................................................................................................GTAGAGGAGAGGCTACCACCAC.............................................................. 22 0 2 0.50 1 1 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCACAA............................................................ 23 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................................AGAGGAGAGGCTACTACCACCA............................................................ 22 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................................AGAGGAGAGGCTACCACCACCGT........................................................... 23 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCACCAAT.......................................................... 25 2 2 0.50 1 0 1 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCACA............................................................. 22 1 2 0.50 1 0 1 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCACCGTA.......................................................... 25 3 2 0.50 1 1 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCCCCACCA............................................................ 23 1 2 0.50 1 1 0 0 0 0 0
..................................................................................................................GTAGAGGAGAGGCTACCACCATCA............................................................ 24 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................................TAGCGGAGAGGCTACCACCACCA............................................................ 23 1 2 0.50 1 1 0 0 0 0 0
..................................................................................................................GTAGAGGAGAGGCTACCACA................................................................ 20 1 3 0.33 1 1 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCACCCGT............................................................. 22 3 3 0.33 1 1 0 0 0 0 0
..................................................................................................................GTAGAGGAGAGGCTAC.................................................................... 16 0 3 0.33 1 1 0 0 0 0 0
..................................................................................................................GTAGAGGAGAGGCTACCCCCGT.............................................................. 22 3 4 0.25 1 1 0 0 0 0 0
.....................................................................................................................GAGGAGAGGCTACCACCGT.............................................................. 19 2 6 0.17 1 1 0 0 0 0 0
..................................................................................................................GTAGAGGAGAGGCTACCATCGT.............................................................. 22 3 7 0.14 1 1 0 0 0 0 0
...................................................................................................................TAGAGGAGAGGCTACCTAC................................................................ 19 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GGCCCTAGCGGTCTGGTTGGTGACGATGTAGCGGTAGGAGTTGTAGTAGGTCCCCCTCCACCTGGGGTGGGTCCATCCACGCCGGGGAAGCAAGATGGGGGCCTCGGGTGTCCCCATCTCCTCTCCGATGGTGGTGGTGCGGACACGGGCGGGGTCCAGGTGTTCTCGGACGTCGCCTAGGCCCTTGCCTTCGACCGG

*********************************************.....(((((.((((.((((.((((..((((((((.((...))...)))))))))))).)))).....))))..))))).........***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes
.......................CGATGTCGCGGTAGG................................................................................................................................................................ 15 1 20 0.20 4 4

Generated: 09/01/2015 at 11:25 AM