ID:

ssc-mir-9785

 Coordinate:

chr3:22233412-22233489 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.5 -38.6

Sense Strand Reads

CATTTGGCCACCCTAGGTAGCACACACCCAGGCGATCTTGCAAGTAAGAGCTCAGAGTTCACCCTCATCCTGGTGTCCGGCACCACTGTACAAACTTGCTGCCCACCTGGGTGAGAAGGACTCTGTGTTCCCTCTGTGTTTCTCTCCATGAAATAAGTCCCTCATGTTGTAAGACTCT

*********************************************..((((.((((((((...(((((((.((((...((((.((..((....)).)).)))))))).)))))))..)))))))).)))).....******************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066810

testes		 SRR1274764

testes		 SRR1274763

ovary		 SRR139076

testes
............................................................ACCCTCATCCTGGTGTCCGGC................................................................................................. 21 0 1 6.00 6 6 0 0 0 0
............................................................ACCCTCATCCTGGTGTCCAGC................................................................................................. 21 1 1 1.00 1 0 0 0 1 0
......................................................................................................................................TGTGTTTCTCTCCATGAAATAAGTCCCTC............... 29 0 1 1.00 1 0 1 0 0 0
..................................................................................CCACTGTACAAACTTGCTGCCCACCTT..................................................................... 27 1 1 1.00 1 1 0 0 0 0
............................................TAAGAGCTCAGAGTTCACCCTCATCC............................................................................................................ 26 0 2 1.00 2 2 0 0 0 0
............................................................ACCCTCATCCTGGTGTCCGGCATT.............................................................................................. 24 2 1 1.00 1 0 0 0 0 1
.....................................................................................................................................CTGTGTTTCTCTCCATGAAATAAGTCCC................. 28 0 1 1.00 1 0 0 1 0 0
............................................................ACCCTCATCCTGGTGTCCGGCA................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
..................................................................................................CTGCCCACCTGGGTGAGAAGGA.......................................................... 22 0 1 1.00 1 0 1 0 0 0
......................................TGCAAGTAAGAGCTCAGAGTTCACCCTCATC............................................................................................................. 31 0 2 0.50 1 0 0 1 0 0
.........................................AAGTAAGAGCTCAGAGTTC...................................................................................................................... 19 0 3 0.33 1 0 0 0 1 0
................GTAGCACACACCCAGGCG................................................................................................................................................ 18 0 8 0.13 1 1 0 0 0 0

Anti-sense strand reads

GTAAACCGGTGGGATCCATCGTGTGTGGGTCCGCTAGAACGTTCATTCTCGAGTCTCAAGTGGGAGTAGGACCACAGGCCGTGGTGACATGTTTGAACGACGGGTGGACCCACTCTTCCTGAGACACAAGGGAGACACAAAGAGAGGTACTTTATTCAGGGAGTACAACATTCTGAGA

*******************************************..((((.((((((((...(((((((.((((...((((.((..((....)).)).)))))))).)))))))..)))))))).)))).....********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066809

ovary
......................................................CTCAAGTGGGAGTAGGACCA........................................................................................................ 20 0 1 2.00 2 2 0
............................................................................................................................CACAAGGGAGACACGAAGAGAGGTA............................. 25 1 1 1.00 1 1 0
...................................................AGTCTCAAGTGGGAGTAGGAC.......................................................................................................... 21 0 1 1.00 1 0 1
................................................................................................................................TGGGAGACACAAAGAGAGGTA............................. 21 1 7 0.29 2 2 0

Generated: 09/01/2015 at 11:34 AM