ID:

ssc-mir-9-3

 Coordinate:

chr7:59924193-59924273 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature

  1. ssc-mir-9-2  chr2:98744621-98744643 -
  2. ssc-mir-9-1  chr4:102543261-102543283 -
  3. ssc-mir-9-3  chr7:59924203-59924225 +
star

  1. ssc-mir-9-2  chr2:98744585-98744606 -
  2. ssc-mir-9-1  chr4:102543223-102543244 -
  3. ssc-mir-9-3  chr7:59924242-59924263 +

Sense Strand Reads

GCAGCGGCACGTGGGGCCAACGGCGCGGCAGCGGCTGTGGCGAAGGGAGGCCCGTTTCTCTCTTTGGTTATCTAGCTGTATGAGTGCCACAGAGCCGTCATAAAGCTAGATAACCGAAAGTAGAAATGACTCTCACAACTTCTGCGTTTGAgcgcccgccccgcctgccgccccggcccTC

*********************************************.((((..(((((((((.(((((((((((((((.(((((..((......))..))))).))))))))))))))))).)))))))..))))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes		 SRR1274764

testes		 SRR066809

ovary		 SRR139076

testes		 SRR1274763

ovary		 SRR139075

testes
............................................................TCTTTGGTTATCTAGCTGTATGA.................................................................................................. 23 0 3 449.67 1349 977 168 128 49 21 6
............................................................TCTTTGGTTATCTAGCTGTATG................................................................................................... 22 0 3 37.33 112 49 15 35 4 6 3
............................................................TCTTTGGTTATCTAGCTGTATGAAA................................................................................................ 25 2 3 35.33 106 81 15 0 10 0 0
...................................................................................................ATAAAGCTAGATAACCGAAAGT............................................................ 22 0 3 31.67 95 22 5 1 65 0 2
.............................................................CTTTGGTTATCTAGCTGTATGA.................................................................................................. 22 0 3 24.00 72 58 9 3 2 0 0
............................................................TCTTTGGTTATCTAGCTGTATGT.................................................................................................. 23 1 3 23.67 71 43 11 14 3 0 0
............................................................TCTTTGGTTATCTAGCTGTAT.................................................................................................... 21 0 3 23.00 69 23 12 31 1 2 0
............................................................TCTTTGGTTATCTAGCTGTATGAA................................................................................................. 24 1 3 22.33 67 43 10 0 12 0 2
..............................................................TTTGGTTATCTAGCTGTATGA.................................................................................................. 21 0 3 12.67 38 31 2 3 2 0 0
............................................................TCTTTGGTTATCTAGCTGTATGAT................................................................................................. 24 1 3 7.67 23 14 5 0 4 0 0
............................................................TCTTTGGTTATCTAGCTGTA..................................................................................................... 20 0 3 4.00 12 0 5 5 2 0 0
....................................................................................................TAAAGCTAGATAACCGAAAGTA........................................................... 22 0 3 4.00 12 1 0 2 3 0 6
...................................................................................................ATAAAGCTAGATAACCGAAAGTA........................................................... 23 0 3 3.00 9 2 0 0 2 0 5
............................................................TCTTTGGTTATCTAGCTGTAA.................................................................................................... 21 1 3 2.67 8 3 0 4 0 1 0
.........................................................ATTTCTTTGGTTATCTAGCTGTATGA.................................................................................................. 26 2 3 2.00 6 3 0 3 0 0 0
..............................................................TTTGGTTATCTAGCTGTATGAGA................................................................................................ 23 1 3 2.00 6 5 1 0 0 0 0
..............................................................TTTGGTTATCTAGCTGTATGAAA................................................................................................ 23 2 4 1.75 7 4 0 0 3 0 0
.............................................................CTTTGGTTATCTAGCTGTATGAAA................................................................................................ 24 2 3 1.67 5 4 1 0 0 0 0
............................................................TCTTTGGTTATCTAGCTGTATGAAC................................................................................................ 25 2 3 1.67 5 3 0 0 2 0 0
............................................................TCTTTGGTTATCTAGCTGTATGAG................................................................................................. 24 0 3 1.67 5 3 2 0 0 0 0
....................................................................................................TAAAGCTAGATAACCGAAAGTAT.......................................................... 23 1 3 1.67 5 1 0 1 3 0 0
............................................................TCTTTGGTTATCTAGCTGTATGAAG................................................................................................ 25 2 3 1.33 4 3 1 0 0 0 0
.............................................................CTTTGGTTATCTAGCTGTATGAA................................................................................................. 23 1 3 1.33 4 1 2 0 1 0 0
............................................................TCTTTGGTTATCTAG.......................................................................................................... 15 0 8 1.25 10 0 0 0 7 0 3
.........................................................CGCTCTTTGGTGATCTAGCTGTGTG................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
...............................................................TTGGTTATCTAGCTGTATGA.................................................................................................. 20 0 3 1.00 3 2 0 0 1 0 0
....................................................................................................TAAAGCTAGATAACCGAAAGT............................................................ 21 0 3 1.00 3 1 0 0 2 0 0
...........................................................CTCTTTGGTTATCTAGCTGTATGAAA................................................................................................ 26 2 1 1.00 1 1 0 0 0 0 0
............................................................TCTTTGGTGATCTAGCTGTATGA.................................................................................................. 23 1 3 1.00 3 0 0 3 0 0 0
............................................................TCTTTGGTTATCTAGTTGTATGA.................................................................................................. 23 1 3 0.67 2 1 0 1 0 0 0
............................................................TCTTTGGTTATCTAGCTGTATGAC................................................................................................. 24 1 3 0.67 2 0 0 0 2 0 0
............................................................TCTTTGGTTATCTAGCTGTACGA.................................................................................................. 23 1 3 0.67 2 1 1 0 0 0 0
............................................................TCTTTGGTTATCTAGCTGTATGAAT................................................................................................ 25 1 3 0.67 2 1 1 0 0 0 0
............................................................TCTTTGGCTATCTAGCTGTATGAA................................................................................................. 24 2 3 0.67 2 1 0 0 1 0 0
.............................................................CTTTGGTTATCTAGCTGTAT.................................................................................................... 20 0 3 0.67 2 0 0 2 0 0 0
.............................................................CTTTGGTTATCTAGCTGTATGAT................................................................................................. 23 1 3 0.67 2 2 0 0 0 0 0
............................................................TCTTTAGTTATCTAGCTGTATGA.................................................................................................. 23 1 3 0.67 2 2 0 0 0 0 0
............................................................TCTTTGGTTACCTAGCTGTATGA.................................................................................................. 23 1 3 0.67 2 2 0 0 0 0 0
...................................................................................................ATAAAGCTAGATAACCGAAAG............................................................. 21 0 3 0.67 2 0 0 0 2 0 0
.............................................................TTTTGGTTATCTAGCTGTATG................................................................................................... 21 1 3 0.67 2 0 0 0 1 0 1
............................................................TCTTTGGTTATCTAGCTGT...................................................................................................... 19 0 3 0.67 2 1 0 1 0 0 0
............................................................TCTTTGGTTATCTAGCTG....................................................................................................... 18 0 3 0.33 1 0 0 0 0 1 0
...............................................................TTGGTTATCTAGCTGTATGAA................................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0
............................................................CCTTTGGTTATCTAGCTGTATGA.................................................................................................. 23 1 3 0.33 1 0 0 0 1 0 0
............................................................TCTTTGGTTATCTAGCTGTATGAGAC............................................................................................... 26 2 3 0.33 1 0 0 0 1 0 0
...................................................................................................ATAAAGCTAGATAACCGCAAGTA........................................................... 23 1 3 0.33 1 0 0 0 1 0 0
............................................................GCATTGGTGATCTAGCTGTATG................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
............................................................TCTTTGGTTATTTAGCTGTATGA.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
..........................................................ATTCTTTGGTTATCTAGCTGTATGA.................................................................................................. 25 2 3 0.33 1 1 0 0 0 0 0
..................................................................................................CATAAAGCTAGATAACCGAAAGTA........................................................... 24 0 3 0.33 1 1 0 0 0 0 0
...................................................................................................ATAAAGCTAGATAACCGAAA.............................................................. 20 0 3 0.33 1 0 1 0 0 0 0
............................................................TCTTTGGTTATCTAGGTGTATGA.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...................................................................................................ATATAGCTAGATAACCGAAAGT............................................................ 22 1 3 0.33 1 0 0 0 1 0 0
............................................................TCTTTGGTTATCTAGTTGTATGT.................................................................................................. 23 2 3 0.33 1 0 0 1 0 0 0
............................................................TCTTTGGTTATCTACCTGTATGC.................................................................................................. 23 2 3 0.33 1 0 1 0 0 0 0
............................................................TCTTTGGTGATCTAGCTGTATG................................................................................................... 22 1 3 0.33 1 0 0 1 0 0 0
............................................................ACTTTGGTTATCTAGCTGTATGA.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
............................................................TCTTTGGTTATCTAGCTGTATGAGTG............................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0
..............................................................TTTGGTTATCTAGCTGTATGT.................................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0
............................................................TCTTTGGTTATCTGGCTGTATGA.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
............................................................TATTTGGTTATCTAGCTGTATGA.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
..............................................................TTTGGTTATCTAGCTGTATGAA................................................................................................. 22 1 3 0.33 1 1 0 0 0 0 0
............................................................TCTTTGGTTATCTAGCTGCATGA.................................................................................................. 23 1 3 0.33 1 0 0 0 1 0 0
............................................................TCTTTGGTTATCTAGCTGTATAAAA................................................................................................ 25 3 3 0.33 1 1 0 0 0 0 0
............................................................TCTTTGGTTATCTAGCTGTATGTA................................................................................................. 24 2 3 0.33 1 1 0 0 0 0 0
............................................................TCTTTGGTTATCTAGCTGTATGTT................................................................................................. 24 2 3 0.33 1 1 0 0 0 0 0
...................................................................................................ATAAAGCTAGATAACCGAAAGC............................................................ 22 1 3 0.33 1 0 0 0 1 0 0
............................................................TCTTTGGTGATCTAGCTGTGTGA.................................................................................................. 23 2 3 0.33 1 0 0 1 0 0 0
............................................................TTTTTGGTTATCTAGCTGTATGA.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
............................................................TCTTTGGTTATCTAGCTGTATGAAGC............................................................................................... 26 3 3 0.33 1 0 0 0 1 0 0
...................................................................................................ATAAAGCTAGATAACCGAAAGA............................................................ 22 1 3 0.33 1 0 0 0 1 0 0
............................................................TCTTTGGTTATCTAGCTGTATGG.................................................................................................. 23 1 3 0.33 1 0 1 0 0 0 0
...................................................................................................ATAAAGCTAGATAACCGAAAGTAT.......................................................... 24 1 3 0.33 1 0 0 0 1 0 0
...................................................................................................ATAAAGTTAGATAACCGAAAGT............................................................ 22 1 3 0.33 1 0 0 0 1 0 0
............................................................TCTTTTGTTATCTAGCTGTATGA.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
............................................................TCTTTGGTTGTCTAGCTGTATGA.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
..................................................................................................CATAAAGCTAGATAACCGAATT............................................................. 22 2 3 0.33 1 0 0 0 1 0 0
..............................................................TTTGGTTATCTAGCTGTATGAAC................................................................................................ 23 2 3 0.33 1 0 0 0 1 0 0
....................................................................................................TAAAGCTAGATAACCGAAAG............................................................. 20 0 3 0.33 1 0 1 0 0 0 0
.............................................................CTTTGGTTATCTAGCTGTTTGA.................................................................................................. 22 1 3 0.33 1 0 0 0 1 0 0
...................................................................................................ATAAAGCTAGATAACCGAACGT............................................................ 22 1 3 0.33 1 0 0 0 1 0 0
.............................................................CTTTGGTTATCTAGCTGTATGAGA................................................................................................ 24 1 3 0.33 1 0 0 1 0 0 0
............................................................TCTTTGGTTACCTAGCTGTATGAAA................................................................................................ 25 3 3 0.33 1 1 0 0 0 0 0
............................................................TCTTTGGTTATCTAGCTGTATGATT................................................................................................ 25 1 3 0.33 1 1 0 0 0 0 0
....................................................................................................TAAAGCTAGATAACCGAAAGTATT......................................................... 24 2 3 0.33 1 0 0 0 1 0 0
..............................................................TTTGGTTATCTAGCTGTATGAGT................................................................................................ 23 0 3 0.33 1 1 0 0 0 0 0
............................................................TCTTTGGTTATCTAGCTGTATGC.................................................................................................. 23 1 3 0.33 1 0 1 0 0 0 0
............................................................TCTTTGGTTATCTAGCTGTATGAGA................................................................................................ 25 1 3 0.33 1 1 0 0 0 0 0
............................................................TCTTTGGTTATCTAGCTGTATGACAT............................................................................................... 26 3 3 0.33 1 0 0 0 1 0 0
...................................................................................................ATAAAGCTAGATAACCG................................................................. 17 0 3 0.33 1 0 0 0 1 0 0
............................................................TCTTTGGTTATCTAGCTGTATGAAAA............................................................................................... 26 3 4 0.25 1 0 1 0 0 0 0
............................................................CCTTTGGTTATCTAGCTGTATGAAA................................................................................................ 25 3 4 0.25 1 1 0 0 0 0 0
............................................................TCTTTGGTTATCTAGC......................................................................................................... 16 0 4 0.25 1 0 0 0 1 0 0
...............................................................TTGGTTATCTAGCTGTATGAAA................................................................................................ 22 2 4 0.25 1 0 1 0 0 0 0
............................................................TCTTTGGTTGTCTAGCTGTATGAAA................................................................................................ 25 3 4 0.25 1 1 0 0 0 0 0
.............................................................CTTTGGTTATCTAGCTGTATGAAAA............................................................................................... 25 3 4 0.25 1 0 1 0 0 0 0
...................................................................................................ATAAAGCTAGATAAACGAAAGT............................................................ 22 1 4 0.25 1 0 0 0 1 0 0
............................................................TCTTTGGTTATCTAGCTGTAGAAC................................................................................................. 24 3 5 0.20 1 0 0 0 0 0 1
............................................................TCTTTGGTTATCTAGCTGTGA.................................................................................................... 21 2 6 0.17 1 0 0 0 0 0 1
.........................................................ATTTTTTTGGTTATCTAGCTGTATGA.................................................................................................. 26 3 6 0.17 1 1 0 0 0 0 0
............................................................CTTTTGGTTATCTAGCTGTATGA.................................................................................................. 23 2 6 0.17 1 0 0 0 1 0 0
..............................................................TTTGGCTATCTAGCTGTATGAAA................................................................................................ 23 3 15 0.07 1 1 0 0 0 0 0

Anti-sense strand reads

CGTCGCCGTGCACCCCGGTTGCCGCGCCGTCGCCGACACCGCTTCCCTCCGGGCAAAGAGAGAAACCAATAGATCGACATACTCACGGTGTCTCGGCAGTATTTCGATCTATTGGCTTTCATCTTTACTGAGAGTGTTGAAGACGCAAACTgGgGGGgGGGGgGGtgGGgGGGGggGGGAG

*********************************************.((((..(((((((((.(((((((((((((((.(((((..((......))..))))).))))))))))))))))).)))))))..))))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139076

testes
.................................................................................................AGTATGTCGATCTATTGGTTTTC............................................................. 23 2 6 0.17 1 1

Generated: 09/01/2015 at 11:41 AM