ID:

ssc-mir-874

 Coordinate:

chr2:145381098-145381181 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.4 -39.3 -39.2

Sense Strand Reads

TTAAACAAGTCTTCTGCCTCGACCTCGTCATGCTCCTTCGGATGAATTTTTGGTGTTAGCCCTGCGGCCCCACGCACCAGGGTAAGAGAGACTCTCGCTTCCTGCCCTGGCCCGAGGGACCGACTGGCTGGGCCTGCCTTCTGCCCGGCTCACCGGTCATGGAAGAGAGTTTGGATACACGCTC

*************************************************..(((..(((((...(((.(((.((..((((((((((.(((...))).))...))))))))..)).))).)))...))))).))).....********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR1274763

ovary		 SRR1274764

testes		 SRR066810

testes		 SRR139075

testes		 SRR139076

testes
.....................................................................................................CTGCCCTGGCCCGAGGGACCGAC............................................................ 23 0 1 252.00 252 115 45 56 24 8 4
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACT........................................................... 24 0 1 150.00 150 73 37 20 17 3 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGA............................................................. 22 0 1 108.00 108 57 14 17 15 4 1
................................................................CGGCCCCACGCACCAGGGTAAGA................................................................................................. 23 0 1 71.00 71 13 53 1 3 0 1
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACA........................................................... 24 1 1 49.00 49 26 9 7 6 1 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGAT............................................................ 23 1 1 39.00 39 16 7 4 8 3 1
................................................................CGGCCCCACGCACCAGGGTAA................................................................................................... 21 0 1 31.00 31 0 26 0 0 5 0
................................................................CGGCCCCACGCACCAGGGTAAG.................................................................................................. 22 0 1 20.00 20 8 7 2 2 0 1
.....................................................................................................CTGCCCTGGCCCGAGGGACCGAA............................................................ 23 1 1 14.00 14 5 4 4 0 1 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGATT........................................................... 24 1 1 12.00 12 9 1 1 1 0 0
................................................................CGGCCCCACGCACCAGGGTA.................................................................................................... 20 0 1 11.00 11 0 8 1 0 2 0
......................................................................................................TGCCCTGGCCCGAGGGACCGAC............................................................ 22 0 1 9.00 9 4 4 0 0 0 1
.....................................................................................................CTGCCCTGGCCCGAGGGACCGAAA........................................................... 24 2 1 8.00 8 1 2 4 0 0 1
................................................................CGGCCCCACGCACCAGGGTAAGT................................................................................................. 23 1 1 8.00 8 0 7 1 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGAAT........................................................... 24 1 1 8.00 8 1 4 2 0 0 1
.....................................................................................................CTGCCCTGGCCCGAGGGACCGT............................................................. 22 1 1 7.00 7 4 0 0 2 1 0
................................................................CGGCCCCACGCACCAGGGTAAGAT................................................................................................ 24 1 1 6.00 6 0 6 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACTT.......................................................... 25 1 1 5.00 5 2 2 0 1 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACC............................................................... 20 0 1 5.00 5 3 2 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACG........................................................... 24 1 1 5.00 5 2 0 2 0 1 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCG.............................................................. 21 0 1 4.00 4 3 1 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGAGT........................................................... 24 1 1 4.00 4 0 3 1 0 0 0
......................................................................................................TGCCCTGGCCCGAGGGACCGACA........................................................... 23 1 1 4.00 4 2 1 0 1 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACC........................................................... 24 1 1 4.00 4 2 0 2 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACTA.......................................................... 25 1 1 3.00 3 0 1 1 1 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGAC................................................................ 19 0 1 3.00 3 2 0 0 1 0 0
..................................................................GCCCCACGCACCAGGGTAAGA................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACTTT......................................................... 26 2 1 3.00 3 1 0 0 2 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGA................................................................. 18 0 1 3.00 3 1 1 1 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGAG............................................................ 23 1 1 2.00 2 0 2 0 0 0 0
......................................................................................................TGCCCTGGCCCGAGGGACCGA............................................................. 21 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGATA........................................................... 24 2 1 2.00 2 2 0 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGTAT........................................................... 24 2 1 2.00 2 0 0 2 0 0 0
...............................................................GCGGCCCCACGCACCAGGGTAT................................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0
......................................................................................................TGCCATGGCCCGAGGGACCGAC............................................................ 22 1 1 1.00 1 0 0 0 1 0 0
................................................................CCGCCCCACGCACCAGGGTA.................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCAATT........................................................... 24 2 1 1.00 1 0 0 1 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACGA.......................................................... 25 2 1 1.00 1 0 1 0 0 0 0
................................................................CGGCCCCACGCACCAGGGTAAA.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGAAGA.......................................................... 25 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................................CTGCCCTGGCTCGAGGGACCGAT............................................................ 23 2 1 1.00 1 0 1 0 0 0 0
....................................................................................................CCGGCCCCGGCCCGAGGGACCGA............................................................. 23 2 1 1.00 1 1 0 0 0 0 0
................................................................CGGCCCCACGCCCCAGGGTAA................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0
.....................................................................................................TTGCCCTGGCCCGAGGGACCGACT........................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGCT............................................................ 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................GCGGCCCCACGCACCAGGGGAA................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................GCGGCCCCACGCACCAGGGTAAG.................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 1
.....................................................................................................CTGCCCTGGCCCGAGGGACA............................................................... 20 1 2 1.00 2 0 0 0 0 2 0
..................................................................GCCCCACGCACCAGGGTAAG.................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACTAT......................................................... 26 2 1 1.00 1 0 1 0 0 0 0
................................................................CGGCCCCTCGCACCAGGGTAAGA................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................TGCCCTGGCCCGAGGGACCGAAT........................................................... 23 1 1 1.00 1 0 1 0 0 0 0
....................................................................................AGAGAGACTCTCGCTTCCTG................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0
.....................................................................................................CTGCCCTGGCCCGAGTGACCGACA........................................................... 24 2 1 1.00 1 1 0 0 0 0 0
................................................................CGGCCCCACGCACCAGGGTAAGTT................................................................................................ 24 2 1 1.00 1 0 1 0 0 0 0
....................................................................................................CCTGCCCTGGCCCGAGGGACCGAC............................................................ 24 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATTCTGCCCTGGCCCGAGGGACCGAC............................................................ 26 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACTTGT........................................................ 27 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGAAAT.......................................................... 25 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................CCTGCCCTGGCCCGAGGGACCGACT........................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACAA.......................................................... 25 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................................CTGCCCTAGCCCGAGGGACCGAC............................................................ 23 1 1 1.00 1 0 0 0 1 0 0
......................................................................................................TGCCCTGGCCCGAGGGACCGACT........................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..................................................................GACCCACGCACCAGGGTAAGA................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACAAGA........................................................ 27 3 1 1.00 1 0 0 1 0 0 0
.................................................................GGCCCCACGCACCAGGGTAAGA................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTGCCCCGGCCCGAGGGACCGAC............................................................ 23 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACTGA......................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTGCCCTGGTCCGAGGGACCGAC............................................................ 23 1 1 1.00 1 1 0 0 0 0 0
................................................................CGGCTCCACGCACCAGGGTAAGA................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
..............................................................GGCGGCCCCACGCACCAGGGTAAGA................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................................GCCCTGGCCCGAGGGACCGA............................................................. 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTGCCCTGGCCCAAGGGACCGAC............................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.................................................................CGGCCCACGCACCAGGGTAAGA................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACTTTCT....................................................... 28 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTGTCCTGGCCCGAGGGACCGAC............................................................ 23 1 1 1.00 1 1 0 0 0 0 0
................................................................CGGCCCCACGCACCAGGGTAAGAA................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGTT............................................................ 23 2 1 1.00 1 0 0 0 1 0 0
......................................................................................................TACCCTGGCCCGAGGGACCGA............................................................. 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACAT.......................................................... 25 2 1 1.00 1 0 0 1 0 0 0
.....................................................................................................CTGCCCTGGCCCGGGGGACCGAC............................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACTAAA........................................................ 27 3 1 1.00 1 0 0 1 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACTTTT........................................................ 27 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGACCAA......................................................... 26 3 1 1.00 1 0 0 1 0 0 0
.....................................................................................................CTGCCCTGGCCCGGGGGACCGACT........................................................... 24 1 1 1.00 1 0 0 1 0 0 0
................................................................CGGCCCCACGTACCAGGGTA.................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0
.....................................................................................................CTGCCCTGGCCCGAGGAACCGA............................................................. 22 1 1 1.00 1 0 0 0 0 1 0
...............................................................GCGGCCCCATGCCCCAGGGTAA................................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGAATA.......................................................... 25 2 1 1.00 1 0 0 1 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGTAA........................................................... 24 3 2 0.50 1 0 1 0 0 0 0
.....................................................................................................CTGCCCTGGCCCGAGGGACCGTA............................................................ 23 2 2 0.50 1 1 0 0 0 0 0

Anti-sense strand reads

AATTTGTTCAGAAGACGGAGCTGGAGCAGTACGAGGAAGCCTACTTAAAAACCACAATCGGGACGCCGGGGTGCGTGGTCCCATTCTCTCTGAGAGCGAAGGACGGGACCGGGCTCCCTGGCTGACCGACCCGGACGGAAGACGGGCCGAGTGGCCAGTACCTTCTCTCAAACCTATGTGCGAG

*********************************************..(((..(((((...(((.(((.((..((((((((((.(((...))).))...))))))))..)).))).)))...))))).))).....************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes		 SRR066809

ovary
..............ACGGAGCTTGAGCACTAGGAGGA................................................................................................................................................... 23 3 4 0.50 2 2 0
...............CGGAGCTTGAGCACTAGGAGGA................................................................................................................................................... 22 3 12 0.17 2 1 1
..............ACGGAGCTTGAGCACTAGGAG..................................................................................................................................................... 21 3 13 0.08 1 0 1

Generated: 09/01/2015 at 11:32 AM