ID:

ssc-mir-769

 Coordinate:

chr6:47708761-47708840 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-44.9 -44.7 -44.4
mature

  1. ssc-mir-769  chr6:47579837-47579858 +
  2. ssc-mir-769  chr6:47708773-47708794 +
star

  1. ssc-mir-769  chr6:47579876-47579898 +
  2. ssc-mir-769  chr6:47708812-47708834 +

Sense Strand Reads

CACTCCTGAGCTGCTGGTGGTGACATCTCGGCCGACTTGGCGCCAATTCCTGCGCTCTGACCTGAGACCTCTGGGTTCTGAGCTGTGATGTTGCTTCCAAGCTGGGATCTCTGGGGTCTTGGTTCAGGGTCGGGGCCTCTGGGTTCTGAGCACCAGCGAGGACAGAGTGCTGGGAGGTGG

***********************************************(((((.(((((((.((((((((((.(((.(((.((((..((.......))..)))).))).))).)))))))))).))))))))))))....***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1274763

ovary		 SRR066809

ovary		 SRR1274764

testes		 SRR139075

testes		 SRR066810

testes		 SRR139076

testes
..............................................................TGAGACCTCTGGGTTCTGAGCT................................................................................................ 22 0 2 628.00 1256 618 202 320 43 64 9
..............................................................TGAGACCTCTGGGTTCTGAGC................................................................................................. 21 0 2 180.00 360 40 179 24 32 83 2
..............................................................TGAGACCTCTGGGTTCTGAGCTT............................................................................................... 23 1 2 39.50 79 45 5 20 6 1 2
.....................................................................................................CTGGGATCTCTGGGGTCTTGGTT........................................................ 23 0 2 30.00 60 14 17 4 20 2 3
.....................................................................................................CTGGGATCTCTGGGGTCTTGGT......................................................... 22 0 2 18.50 37 13 4 2 16 0 2
..............................................................TGAGACCTCTGGGTTCTGAGA................................................................................................. 21 1 2 16.00 32 8 11 6 1 6 0
..............................................................TGAGACCTCTGGGTTCTGAGCTA............................................................................................... 23 1 2 15.00 30 6 7 0 13 2 2
......................................................................................................TGGGATCTCTGGGGTCTTGGTT........................................................ 22 0 2 14.50 29 1 3 0 24 0 1
.............................................................CTGAGACCTCTGGGTTCTGAGCT................................................................................................ 23 0 2 13.00 26 19 0 5 0 2 0
..............................................................TGAGACCTCTGGGTTCTGAGCTAT.............................................................................................. 24 1 2 7.00 14 4 4 1 1 0 4
..............................................................TGAGACCTCTGGGTTCTGAG.................................................................................................. 20 0 2 5.50 11 1 1 0 7 2 0
.............................................................CTGAGACCTCTGGGTTCTGAGC................................................................................................. 22 0 2 5.50 11 2 6 0 0 3 0
..............................................................TGAGACCTCTGGGTTCTGAGCA................................................................................................ 22 1 2 5.00 10 2 4 0 1 2 1
.....................................................................................................CTGGGATCTCTGGGGTCTTGGTTT....................................................... 24 1 2 4.00 8 0 1 0 6 0 1
.....................................................................................................CTGGGATCTCTGGGGTCTTGGTA........................................................ 23 1 2 4.00 8 2 1 0 3 0 2
.....................................................................................................CTGGGATCTCTGGGGTCTTGG.......................................................... 21 0 2 4.00 8 0 0 0 8 0 0
.....................................................................................................CTGGGATCTCTGGGGTCTTGGA......................................................... 22 1 2 3.00 6 0 3 0 3 0 0
...............................................................GAGACCTCTGGGTTCTGAGC................................................................................................. 20 0 2 3.00 6 0 4 0 1 1 0
...............................................................GAGACCTCTGGGTTCTGAGCT................................................................................................ 21 0 2 2.50 5 0 1 1 1 2 0
..............................................................TGAGACCTCTGGGTTCTGAGCAGT.............................................................................................. 24 1 2 2.00 4 0 4 0 0 0 0
......................................................................................................TGGGATCTCTGGGGTCTTGGTTT....................................................... 23 1 2 2.00 4 0 1 0 2 0 1
..............................................................TGAGACCTCTGGGTTCTGAGT................................................................................................. 21 1 2 2.00 4 0 1 0 2 1 0
..............................................................TGAGACCTCTGGGTTCTGAGCAA............................................................................................... 23 2 3 2.00 6 0 2 0 2 1 1
..............................................................TGAGACCTCTGGGTTCTGA................................................................................................... 19 0 2 2.00 4 1 1 0 2 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCAT............................................................................................... 23 2 4 1.75 7 0 0 0 6 0 1
......................................................................................................TGGGATCTCTGGGGTCTTGGTA........................................................ 22 1 3 1.67 5 0 1 0 4 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCTAA.............................................................................................. 24 2 3 1.67 5 2 1 0 1 1 0
..............................................................TGAGACCCCTGGGTTCTGAGCT................................................................................................ 22 1 2 1.50 3 1 0 1 0 1 0
..............................................................TGAGACCTCTGGGTTCTGAGCTG............................................................................................... 23 0 2 1.50 3 0 1 1 1 0 0
......................................................................................................TGGGATCTCTGGGGTCTTGGT......................................................... 21 0 2 1.50 3 0 1 0 2 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCTGT.............................................................................................. 24 0 2 1.50 3 0 1 0 2 0 0
..............................................................TGAGACCTCTGGGTTCTGAGAA................................................................................................ 22 2 4 1.50 6 2 0 3 1 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCTTT.............................................................................................. 24 1 2 1.50 3 0 1 0 0 2 0
...........................................CAATTCCTGCGCTCTGACC...................................................................................................................... 19 0 2 1.00 2 1 0 1 0 0 0
.....................................................................................................CTGGGATCTCTGGGGTCTTGGTAT....................................................... 24 2 2 1.00 2 0 0 0 1 0 1
..............................................................TGAGACCTCTGGGTTCTGAGCAGA.............................................................................................. 24 2 2 1.00 2 2 0 0 0 0 0
............................................AATTCCTGCGCTCTGACC...................................................................................................................... 18 0 2 1.00 2 1 0 1 0 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCTTA.............................................................................................. 24 2 2 1.00 2 0 0 0 2 0 0
.............................................................CTGAGACCTCTGGGTTCTGAG.................................................................................................. 21 0 2 1.00 2 1 1 0 0 0 0
.....................................................................................................CTGGGATTTCTGGGGTCTTGGTT........................................................ 23 1 2 1.00 2 0 0 0 0 0 2
..............................................................TGAGACCTCTGCGTTCTGAGCT................................................................................................ 22 1 2 1.00 2 0 0 1 0 0 1
..............................................................CGAGACCTCTGGGTTCTGAGC................................................................................................. 21 1 2 1.00 2 0 1 0 1 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCAG............................................................................................... 23 1 2 1.00 2 1 1 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTGAT.................................................................................................. 20 1 3 0.67 2 1 0 0 1 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCTAG.............................................................................................. 24 2 3 0.67 2 0 2 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTGCGCT................................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCTACT............................................................................................. 25 3 2 0.50 1 0 0 0 0 1 0
.....................................................................................................CTGGGATCTCTGGGGTATTGGT......................................................... 22 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................CTGGGATCTCTGGGGTCTTGGTTA....................................................... 24 1 2 0.50 1 0 0 0 1 0 0
.............................................................CTGAGACCTCTGGGTTCTGAGT................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0
..............................................................TGAGACCTCTGGGCTCTGAGC................................................................................................. 21 1 4 0.50 2 0 0 0 0 1 1
..............................................................TGAGACCTCTGGGTTCTGAGCTTAGA............................................................................................ 26 2 2 0.50 1 0 0 1 0 0 0
..............................................................TGAGACCTCTGTGTTCTGAGCTAT.............................................................................................. 24 2 2 0.50 1 0 0 0 1 0 0
..............................................................TGAGACCTCTGGGATCTGAGCT................................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTGAA.................................................................................................. 20 1 4 0.50 2 0 0 0 2 0 0
..............................................................TGCGACCTCTGGGTTCTGAGCT................................................................................................ 22 1 2 0.50 1 0 0 1 0 0 0
.....................................................................................................CTGGGATCTCTGGGGTCTTGGTTAA...................................................... 25 1 2 0.50 1 0 1 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCAAT.............................................................................................. 24 2 2 0.50 1 0 1 0 0 0 0
......................................................................................................TGGGATCTCTGGGGTCTTGGTTA....................................................... 23 1 2 0.50 1 0 0 0 1 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCG................................................................................................ 22 1 4 0.50 2 0 0 2 0 0 0
..............................................................TGAAACCTCTGGGTTCTGAGCT................................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCTATT............................................................................................. 25 2 2 0.50 1 1 0 0 0 0 0
.............................................................CTGAGACCTCTGGGTTCTGAGCTGTGATGTTGCTTCCAAGCTGGGATCTCTGGGGTCTTGGTT........................................................ 63 0 2 0.50 1 1 0 0 0 0 0
..............................................................TGAGACCTCCGGGTTCTGAG.................................................................................................. 20 1 2 0.50 1 0 0 0 1 0 0
..............................................................TTAGACCTCTGGGTTCTGAGC................................................................................................. 21 1 2 0.50 1 0 1 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTGCGCTA............................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCTGTT............................................................................................. 25 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................CTGGGATCTCTGGGGTCTTGGTAA....................................................... 24 2 2 0.50 1 0 0 0 1 0 0
...............................................................GAGACCTCTGGGTTCTGAGCTT............................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0
......................................................................................................TGGGATCTCTGGGGTCTTGGTAT....................................................... 23 2 4 0.50 2 0 0 0 2 0 0
..............................................................TGAGACCTCTAGGTTCTGAGCT................................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0
..............................................................TGAGACCTCTCGGTTCTGAGCT................................................................................................ 22 1 2 0.50 1 0 0 1 0 0 0
..............................................................TGAGACCTCTGGGTTTCGAGCT................................................................................................ 22 2 2 0.50 1 0 0 0 0 1 0
.....................................................................................................CTGGGATCTCTGGGGCCTTGGT......................................................... 22 1 2 0.50 1 0 0 0 1 0 0
........................................CGCCAATTCCTGCGCTCTGACC...................................................................................................................... 22 0 2 0.50 1 0 1 0 0 0 0
..............................................................TGAGACCTCTAGGTTCTGAGC................................................................................................. 21 1 2 0.50 1 0 1 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTCAGCT................................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0
..............................................................TGAGACCTATGGGTTCTGAGCT................................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0
.............................................................CTGAGACCTCTGGGTTCTGAGCTT............................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0
.............................................................CTGAGACCTCTGGGTTTTGAGCAT............................................................................................... 24 3 5 0.40 2 0 0 0 2 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCAAA.............................................................................................. 24 3 5 0.40 2 0 2 0 0 0 0
......................................................................................................TGGGATCTCTGGGGTCTTGG.......................................................... 20 0 3 0.33 1 0 1 0 0 0 0
.....................................................................................................CTGGGATCTCTGGGGTCT............................................................. 18 0 3 0.33 1 1 0 0 0 0 0
.....................................................................................................CTGGGATCTCTGGGGTCTTGGAA........................................................ 23 2 3 0.33 1 1 0 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCAC............................................................................................... 23 2 3 0.33 1 1 0 0 0 0 0
.....................................................................................................CTGGGATCTCTGGGGTCTTTAT......................................................... 22 2 3 0.33 1 0 0 0 1 0 0
......................................................................................................TGGGATCTCTGGGGGCTTGGTA........................................................ 22 2 3 0.33 1 0 0 0 1 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCAGAA............................................................................................. 25 3 3 0.33 1 0 0 0 0 1 0
..............................................................TGAGACCTCTGGGTTC...................................................................................................... 16 0 4 0.25 1 1 0 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCGA............................................................................................... 23 2 4 0.25 1 1 0 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTGAGCTTAT............................................................................................. 25 3 4 0.25 1 0 0 1 0 0 0
................................................................AGACCTCTGGGTTCTGAGCTA............................................................................................... 21 1 4 0.25 1 0 0 0 0 1 0
..............................................................TGAGACCTTTGGGTTCTGAGC................................................................................................. 21 1 4 0.25 1 0 1 0 0 0 0
......................................................................................................CTGGATCTCTGGGGTCTTGGTT........................................................ 22 2 5 0.20 1 0 0 0 1 0 0
.....................................................................................................CTGGGATCTCTGGGGTCTTGGTTTT...................................................... 25 2 5 0.20 1 0 0 0 0 1 0
..............................................................TGAGACCTCTGGGTTCTGAGCTAGT............................................................................................. 25 3 5 0.20 1 1 0 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTGAAA................................................................................................. 21 2 10 0.20 2 0 2 0 0 0 0
......................................................................................................TGGGATCTCTGGGGTCTTGGTTTT...................................................... 24 2 7 0.14 1 0 0 0 1 0 0
....................................................................CTCTGGGTTCTGAGCT................................................................................................ 16 0 12 0.08 1 0 0 1 0 0 0
..............................................................TGAGACCTCTGGGTTCTGAGAAT............................................................................................... 23 3 13 0.08 1 1 0 0 0 0 0
..............................................................TGAAACCTCTGGGCTCTGAGC................................................................................................. 21 2 13 0.08 1 0 1 0 0 0 0
..............................................................TGAGACCTCTGGGTTCTGAGAAC............................................................................................... 23 3 14 0.07 1 0 0 1 0 0 0

Anti-sense strand reads

GTGAGGACTCGACGACCACCACTGTAGAGCCGGCTGAACCGCGGTTAAGGACGCGAGACTGGACTCTGGAGACCCAAGACTCGACACTACAACGAAGGTTCGACCCTAGAGACCCCAGAACCAAGTCCCAGCCCCGGAGACCCAAGACTCGTGGTCGCTCCTGTCTCACGACCCTCCACC

*****************************************(((((.(((((((.((((((((((.(((.(((.((((..((.......))..)))).))).))).)))))))))).))))))))))))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:39 AM