ID:

ssc-mir-7144

Coordinate:

chr11:81643736-81643789 +

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-40.6

Sense Strand Reads

GTGTTGGTGGAGCGCGAGCGCGAGCGCGACTCCCGCCGCCGGTTCCGTTTACTTTCCCGGGATTTGGAGCGCTTCCGCACGCGCTCCTTGTCCCGAGACCGCGACCGCGACCGGCTCCGCTTCTTGTTGTGTTTGCTGCTCTTGGTGTGTTTGG *********************************..(((((((.((.((....((.((((((..(((((((........)))))))..)))))).))....)).)).)))))))....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR139075 testes	SRR066809 ovary	SRR1274763 ovary	SRR1274764 testes	SRR139076 testes	SRR066810 testes
..................................................ACTTTCCCGGGATTTGGAGCG...................................................................................	21	0	1	9.00	9	9	0	0	0	0	0
..................................................ACTTTCCCGGGATTTGGAGCGC..................................................................................	22	0	1	5.00	5	2	1	1	1	0	0
..................................................ACTTTCCCGGGATTTGGA......................................................................................	18	0	1	5.00	5	5	0	0	0	0	0
..................................................ACTTTCCCGGGATTTGGAG.....................................................................................	19	0	1	4.00	4	4	0	0	0	0	0
..................................................ACTTTCCCGGGATTTGGAGCGT..................................................................................	22	1	1	4.00	4	3	0	0	0	1	0
..................................................ACTTTCCCGGGATTTG........................................................................................	16	0	1	2.00	2	2	0	0	0	0	0
..................................................ACTTTCCCGGGATTTGG.......................................................................................	17	0	1	1.00	1	1	0	0	0	0	0
..................................................ACTTTCCCGGGATTTGGAGC....................................................................................	20	0	1	1.00	1	0	1	0	0	0	0
..................................................ACTTTCCCGGGTTTTGGAGC....................................................................................	20	1	1	1.00	1	1	0	0	0	0	0
........................................................................................................CCGCGACCGGCTCCG...................................	15	0	4	0.50	2	0	1	0	0	0	1
..................................................ACTTTCCCGGGATTTGGAAA....................................................................................	20	2	7	0.14	1	0	0	0	0	0	1
..................................................................................................GCGCATCCGCGACCGGCTCCGC..................................	22	3	9	0.11	1	0	1	0	0	0	0

Anti-sense strand reads

CACAACCACCTCGCGCTCGCGCTCGCGCTGAGGGCGGCGGCCAAGGCAAATGAAAGGGCCCTAAACCTCGCGAAGGCGTGCGCGAGGAACAGGGCTCTGGCGCTGGCGCTGGCCGAGGCGAAGAACAACACAAACGACGAGAACCACACAAACC *********************************..(((((((.((.((....((.((((((..(((((((........)))))))..)))))).))....)).)).)))))))....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR066810 testes	SRR139075 testes	SRR066809 ovary	SRR139076 testes
..........TCGCGCTCGCGCTCGCGCTGAGG.........................................................................................................................	23	0	1	2.00	2	2	0	0	0
...........CGCGCTCGCGCTCGCGCTGAGG.........................................................................................................................	22	0	1	1.00	1	0	0	1	0
...............................................................................GCGCGAGGAACAGGGCT..........................................................	17	0	1	1.00	1	0	1	0	0
..........................................AAGGCAAATGAAAGGGC...............................................................................................	17	0	2	0.50	1	0	1	0	0
................................................................................................CTGGCGCTGGCGCTGG..........................................	16	0	4	0.25	1	1	0	0	0
.........................................................................................................GCTCTGGCGAAGGCGAAGAACA...........................	22	3	5	0.20	1	0	0	0	1
............................................................................CGTCCGCGAGGAATAGGGC...........................................................	19	2	11	0.09	1	1	0	0	0
........................................................................................ACAGGGCTCTGGCACTGAC...............................................	19	2	13	0.08	1	1	0	0	0

Generated: 09/01/2015 at 11:23 AM