ID:

ssc-mir-7143

 Coordinate:

chr9:31199350-31199410 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.7 -35.7
mature

  1. ssc-mir-7143  chr9:31199388-31199409 +
  2. JH118644-1:36266-36287 -
star

Sense Strand Reads

GAATGAATCAGCGCGTGCTGGGATTGCGCTCAACCGTCTCCTAGCAAAGCAAGCTCAGCTCTGAAGTGCAGAGGCTGTTTGCACTTCCTCTGCACTTGAAGCTGAGACTGAAAGGCTCCTCAGCTGAAAGGGTACCAATGGGTGTGCAAGCAGTTAAGATT

***********************************.......(((....((..(((((((...(((((((((((..((....))..)))))))))))..)))))))..))....))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066810

testes		 SRR066809

ovary		 SRR1274763

ovary
........................................................................................TCTGCACTTGAAGCTGAGACTG................................................... 22 0 2 1.50 3 2 0 0 1
........................................................................................TCTGCACTTGAAGCTGAGACT.................................................... 21 0 2 1.00 2 0 1 1 0
........................................................................................TCTGCACTTGAAGCTGAGACTGT.................................................. 23 1 2 0.50 1 0 1 0 0
........................................................................................TCTGCACTTGAAGCTGAGACTGAT................................................. 24 1 2 0.50 1 1 0 0 0
........................................................................................TCTGCACTTGAAGCTGAGACTGA.................................................. 23 0 2 0.50 1 0 0 1 0
........................................................................................TCTGCACTTGAAGCTGAGACA.................................................... 21 1 4 0.25 1 0 1 0 0

Anti-sense strand reads

CTTACTTAGTCGCGCACGACCCTAACGCGAGTTGGCAGAGGATCGTTTCGTTCGAGTCGAGACTTCACGTCTCCGACAAACGTGAAGGAGACGTGAACTTCGACTCTGACTTTCCGAGGAGTCGACTTTCCCATGGTTACCCACACGTTCGTCAATTCTAA

***********************************.......(((....((..(((((((...(((((((((((..((....))..)))))))))))..)))))))..))....))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes
.................................................ATTCGAGTCGAGACTTCACGT........................................................................................... 21 1 2 0.50 1 1

Generated: 09/01/2015 at 11:42 AM