ID:

ssc-mir-7142

 Coordinate:

chr2:7444711-7444770 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.9 -42.6 -42.4

Sense Strand Reads

TTAAAACTACGTAGGAACTTGGNGCAGCCAGTGATTTAGGTTCCTTTTTCACTCTCCGAGGGGCCTTCAAGGGCAAGTTCTTGTCACCTTTGTTGGCTCCTCTGAAGTGAGAAGGAAACCTTCCCATCGTGAAGCTTAAGTAGGAGGTGGGAACAATCAT

***********************************..(((((.((((((((((.((.((((((((..(((((((((....)))...))))))..)))))))).)))))))))))).)))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1274763

ovary		 SRR1274764

testes		 SRR066809

ovary		 SRR139075

testes		 SRR066810

testes		 SRR139076

testes
........................................................................................TTTGTTGGCTCCTCTGAAGTGA.................................................. 22 0 1 459.00 459 270 155 14 9 7 4
........................................................................................TTTGTTGGCTCCTCTGAAGTGT.................................................. 22 1 1 24.00 24 8 5 3 4 3 1
........................................................................................TTTGTTGGCTCCTCTGAAGTG................................................... 21 0 1 21.00 21 13 1 5 0 2 0
........................................................................................TTTGTTGGCTCCTCTGAAGTGG.................................................. 22 1 1 15.00 15 6 9 0 0 0 0
........................................................................................TTTGTTGGCTCCTCTGAAGT.................................................... 20 0 1 7.00 7 3 3 1 0 0 0
........................................................................................TTTGTTGGCTCCTCTGAAGTGAT................................................. 23 1 1 7.00 7 4 3 0 0 0 0
........................................................................................TTTGTTGGCTCCTCTGAAG..................................................... 19 0 1 6.00 6 4 1 0 0 1 0
........................................................................................TTTGTTGGCTCCTCTGAAGTGAA................................................. 23 1 1 5.00 5 4 0 1 0 0 0
.........................................................................................TTGTTGGCTCCTCTGAAGTGA.................................................. 21 0 1 2.00 2 1 0 0 1 0 0
........................................................................................ATTGTTGGCTCCTCTGAAGTGA.................................................. 22 1 1 2.00 2 1 0 0 1 0 0
........................................................................................TTTGTTGGCTCCTCTGAAGTGTT................................................. 23 2 1 1.00 1 0 0 1 0 0 0
........................................................................................TTTGTTGGCTCCTCTGAAGTGAAA................................................ 24 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TTTGTTGGCTCCTCTGAAGTA................................................... 21 1 1 1.00 1 0 0 1 0 0 0
........................................................................................TTTGCTGGCTCCTCTGAAGTGA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TTTGTTGGCTCCTCTGAGGTGA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ACTCTCCGAGGGGCCTTCAAGGG....................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0
........................................................................................TTTGTTGGCTCCTCTGAAGAGA.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
........................................................................................TTTGTTGACTCCTCTGAAGTG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TTTGTTGGCTCCTCTGAAGTGATT................................................ 24 2 1 1.00 1 0 1 0 0 0 0
........................................................................................TTTGTTGGCTCCTCTGAAGTGAG................................................. 23 0 1 1.00 1 0 0 1 0 0 0
........................................................................................TTTATTGGCTCCTCTGAAGTG................................................... 21 1 1 1.00 1 0 0 1 0 0 0
........................................................................................TTTGTTGGCTCCTCTGAAGTT................................................... 21 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TTTGTTGGCTCCTCTGAAGAAA.................................................. 22 2 6 0.50 3 1 0 0 2 0 0
........................................................................................TTTGTTGGCTCCTCTGAAGTAAT................................................. 23 2 2 0.50 1 1 0 0 0 0 0
........................................................................................TTTGTTGGCTCCTCTGAAGTTAA................................................. 23 2 3 0.33 1 0 0 1 0 0 0

Anti-sense strand reads

AATTTTGATGCATCCTTGAACCNCGTCGGTCACTAAATCCAAGGAAAAAGTGAGAGGCTCCCCGGAAGTTCCCGTTCAAGAACAGTGGAAACAACCGAGGAGACTTCACTCTTCCTTTGGAAGGGTAGCACTTCGAATTCATCCTCCACCCTTGTTAGTA

***********************************..(((((.((((((((((.((.((((((((..(((((((((....)))...))))))..)))))))).)))))))))))).)))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:31 AM