ID:

ssc-mir-7136

 Coordinate:

chr7:8701439-8701498 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.3 -41.9
mature

  1. ssc-mir-7136  chr7:8701439-8701460 +
  2. JH118585-1:53415-53436 +
star

  1. ssc-mir-7136  chr7:8701477-8701498 +
  2. JH118585-1:53453-53474 +

Sense Strand Reads

TGTCTGTCTCCTTGGCCTCTCCAGACCATGCTGAGTCCTGAGACATCGCTTCTGGTCCAGACACTGTGGAGCTGAAGAGACCAACACTTCTCAGTGTTTGAACCAGAAGCTCTGTCTGCAGAACAATCAACAAAGCCGAGGAGCCCACATGCAACAGGAT

***********************************..((((((((..(((((((((.(((((((((.((((.((..........)))))).))))))))).)))))))))..))))).)))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes		 SRR139075

testes		 SRR1274764

testes		 SRR066809

ovary		 SRR139076

testes		 SRR1274763

ovary
..................................................TCTGGTCCAGACACTGTGGAGC........................................................................................ 22 0 2 9.00 18 4 3 7 2 1 1
..................................................TCTGGTCCAGACACTGTGGAGCT....................................................................................... 23 0 2 1.50 3 0 2 1 0 0 0
........................................................................................TCTCAGTGTTTGAACCAGAAGT.................................................. 22 1 2 1.50 3 0 1 0 0 2 0
........................................................................................TCTCAGTGTTTGAACCAGAAGC.................................................. 22 0 2 1.50 3 2 0 0 1 0 0
........................................................................................TCTCAGTGTTTGAACCAGAAG................................................... 21 0 2 1.00 2 2 0 0 0 0 0
........................................................................................TCTCAGTGTTTGAACCAGAAGA.................................................. 22 1 2 1.00 2 1 0 0 1 0 0
..................................................TCTGGTCCAGACACTGTGGAGA........................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TCTGGTCCAGACACTGCGGAGA........................................................................................ 22 2 2 0.50 1 0 1 0 0 0 0
.......................................................................................TTCTCAGTGTTTGAACCAGAAGA.................................................. 23 1 2 0.50 1 1 0 0 0 0 0
..................................................TCTGGTCCAGACATTGTGGAGC........................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0
..................................................TCTGGTCCAGACACTGTGGAGCTG...................................................................................... 24 0 2 0.50 1 0 1 0 0 0 0
.......................................................................................TTCTCAGTGTTTGAACCAGAAGTA................................................. 24 2 2 0.50 1 0 0 0 0 1 0
..................................................TCTGGTCCAGACACTGTGGAGT........................................................................................ 22 1 2 0.50 1 0 0 1 0 0 0
................................................CTTCTGGTCCAGACACTGTG............................................................................................ 20 0 2 0.50 1 0 1 0 0 0 0
.......................................................................................TTCTCAGTGTTTGAACCAGA..................................................... 20 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................TCAGTGTTTGAACCAGAAGCTC................................................ 22 0 2 0.50 1 0 1 0 0 0 0
........................................................................................TCTCAGTGTTTGAACCAGAAT................................................... 21 1 3 0.33 1 1 0 0 0 0 0
........................................................................................TCTCAGTGTTTGAACCAGAAGTA................................................. 23 2 3 0.33 1 0 0 0 1 0 0

Anti-sense strand reads

ACAGACAGAGGAACCGGAGAGGTCTGGTACGACTCAGGACTCTGTAGCGAAGACCAGGTCTGTGACACCTCGACTTCTCTGGTTGTGAAGAGTCACAAACTTGGTCTTCGAGACAGACGTCTTGTTAGTTGTTTCGGCTCCTCGGGTGTACGTTGTCCTA

***********************************..((((((((..(((((((((.(((((((((.((((.((..........)))))).))))))))).)))))))))..))))).)))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139075

testes
..............................................GCGAAGACCAGGTCTGTGACAC............................................................................................ 22 0 2 0.50 1 1 0
......................................TCTCTGTAGCGAAGACCAGGTCT................................................................................................... 23 1 2 0.50 1 0 1
.............................................AGCGAAGACCAGGTCTGTGAC.............................................................................................. 21 0 2 0.50 1 1 0
...............................................CGAAGACCAGGTCTGTGACACC........................................................................................... 22 0 2 0.50 1 1 0

Generated: 09/01/2015 at 11:41 AM