ID:

ssc-mir-7135

 Coordinate:

chr3:29052266-29052324 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-27.9 -27.8

Sense Strand Reads

TTGCGTAGTGTCTGCCCCACCCCCATCCCTGGCTTTGACCTAAAACCAAGTCTCTGAGACACTGACTGTGGGGGTATGTGTGTGTCCATCTGTCTGTGTCTCTGAGCAGGTGGCTGGCCGTACGACTGGAGTTTGTGGGCAATTGCATCGTCCTGTTTG

*************************************.((....(((....(((.(((((((.(((.(((((.(((....))).)))))..))).))))))).)))..)))....)).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066810

testes		 SRR139076

testes		 SRR1274763

ovary		 SRR1274764

testes		 SRR066809

ovary
.......................................................................................ATCTGTCTGTGTCTCTGAGCAGA................................................. 23 1 1 18.00 18 5 4 0 3 3 3
.......................................................................................ATCTGTCTGTGTCTCTGAGCAG.................................................. 22 0 1 16.00 16 12 1 2 1 0 0
.......................................................................................ATCTGTCTGTGTCTCTGAGCAGT................................................. 23 1 1 12.00 12 8 1 1 1 0 1
.......................................................................................ATCTGTCTGTGTCTCTGAGCAA.................................................. 22 1 1 7.00 7 7 0 0 0 0 0
....................................................TCTGAGACACTGACTGTTGG....................................................................................... 20 1 1 6.00 6 3 3 0 0 0 0
.......................................................................................ATCTGTCTGTGTCTCTGAGC.................................................... 20 0 1 5.00 5 5 0 0 0 0 0
.......................................................................................ATCTGTCTGTGTCTCTGAGCAAA................................................. 23 2 1 4.00 4 3 0 1 0 0 0
..................................................TCTCTGAGACACTGACTGTGGGAGC.................................................................................... 25 2 1 2.00 2 2 0 0 0 0 0
......................................................................................CATCTGTCTGTGTCTCTGAGC.................................................... 21 0 1 2.00 2 0 0 1 0 1 0
........................................................................................TCTGTCTGTGTCTCTGAGCAG.................................................. 21 0 2 2.00 4 1 0 0 0 2 1
.......................................................................................ATCTGTCTGTGTCTCTGAGCA................................................... 21 0 1 2.00 2 1 0 1 0 0 0
.......................................................................................ATCTGTCTGTGTCTCTGAGCAGTT................................................ 24 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................ATCTGTCTGTGTCTCTGAGCAAT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
....................................................TCTGAGACACTGACTGTTGGGGT.................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................ATCTGTCTGTGTCTCTGAGCAT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TCTGTCTGTGTCTCTGAGCAGT................................................. 22 1 3 1.00 3 1 0 0 0 1 1
....................................................TCTGAGACACTGACTGTTGGGA..................................................................................... 22 2 2 1.00 2 2 0 0 0 0 0
....................................................TCTGAGACACTGACTGTGGGG...................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
............................................................................................TCTGTGTCTCTGAGCAGGTGG.............................................. 21 0 1 1.00 1 1 0 0 0 0 0
...........................................AACCAAGTCTCTGAGACACTGA.............................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................ATCTGTCTGTGTCTCTGAGCAAG................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TCTCTGAGACACTGACTGTGG........................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................TCTGTCTGTGTCTCTGAGCAA.................................................. 21 1 2 0.50 1 1 0 0 0 0 0
.......................................................................................ATCTGTCTGTGTCTCTGAGCAGTAT............................................... 25 3 2 0.50 1 0 1 0 0 0 0
........................................................................................TCTGTCTGTGTCTCTGAGCAGA................................................. 22 1 2 0.50 1 0 1 0 0 0 0
.......................................................................................ATCTGTCTGTGTCTCTGA...................................................... 18 0 3 0.33 1 1 0 0 0 0 0
....................................................TCTGAGACACTGACTGTTGGA...................................................................................... 21 2 4 0.25 1 0 1 0 0 0 0
....................................................TCTGAGACACTGACTGTTG........................................................................................ 19 1 4 0.25 1 0 1 0 0 0 0
........................................................................................TCTGTCTGTGTCTCTGAGCAGTA................................................ 23 2 4 0.25 1 0 0 0 0 1 0
.......................................................................................ATCTGTCTGTGTCTCTGAGCAAAA................................................ 24 3 5 0.20 1 1 0 0 0 0 0
....................................................ACTGAGACACTGACTGTTGGGGA.................................................................................... 23 3 7 0.14 1 1 0 0 0 0 0
........................................................................................TCTGTCTGTGTCTCTGAGAAA.................................................. 21 2 14 0.14 2 2 0 0 0 0 0
.......................................................................................CTCTGTCTGTGTCTCTGAGC.................................................... 20 1 10 0.10 1 0 1 0 0 0 0

Anti-sense strand reads

AACGCATCACAGACGGGGTGGGGGTAGGGACCGAAACTGGATTTTGGTTCAGAGACTCTGTGACTGACACCCCCATACACACACAGGTAGACAGACACAGAGACTCGTCCACCGACCGGCATGCTGACCTCAAACACCCGTTAACGTAGCAGGACAAAC

***********************************.((....(((....(((.(((((((.(((.(((((.(((....))).)))))..))).))))))).)))..)))....)).......************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:34 AM