ID:

ssc-mir-676-1

 Coordinate:

chrX:63280928-63281007 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.2

Sense Strand Reads

TTTTTCCTTCCAGCTTCAATGCTTGAGACTTCACATCAGTTCCTGACCTGAACGCGTGACTCTTCAATCTCAGGACTCGCATAATTAGCAGAATGCCGTCCTAAGGTTGTTGAGTTCTGCGTTTCTGGGCATTTCATCTTTATGGCGAAGTACCTGTTCCCTCACTCCAAAGACTAAGCT

********************************************..((((((((((.(((((..((((((.(((((..((((..........)))).))))).))))))..))))).)))))))..)))..************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR1274763

ovary		 SRR139075

testes		 SRR066810

testes		 SRR1274764

testes		 SRR139076

testes
...............................................................................................CCGTCCTAAGGTTGTTGAGTT................................................................ 21 0 1 1533.00 1533 1110 227 103 75 15 3
...............................................................................................CCGTCCTAAGGTTGTTGAGTTT............................................................... 22 1 1 627.00 627 319 153 98 37 18 2
...............................................................................................CCGTCCTAAGGTTGTTGAGTTA............................................................... 22 1 1 161.00 161 57 14 73 9 1 7
...............................................................................................CCGTCCTAAGGTTGTTGAGT................................................................. 20 0 1 124.00 124 98 11 10 2 3 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTTTT.............................................................. 23 1 1 30.00 30 11 8 10 0 1 0
................................................................................................CGTCCTAAGGTTGTTGAGTTT............................................................... 21 1 1 18.00 18 1 0 17 0 0 0
................................................................................................CGTCCTAAGGTTGTTGAGTT................................................................ 20 0 1 15.00 15 2 0 12 0 1 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTCT............................................................... 22 2 1 9.00 9 2 3 3 0 1 0
...............................................................................................CCGTCCTAAGGTTGTTGAG.................................................................. 19 0 1 8.00 8 2 4 1 1 0 0
...........................................................CTCTTCAATCTCAGGACTCGCA................................................................................................... 22 0 1 7.00 7 0 1 6 0 0 0
................................................................................................CGTCCTAAGGTTGTTGAGTTA............................................................... 21 1 1 6.00 6 0 0 5 0 0 1
...............................................................................................CCGTCCTAAGGTTGTTGAGTTC............................................................... 22 0 1 5.00 5 2 0 3 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTA................................................................ 21 1 1 5.00 5 2 0 2 0 1 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTAT............................................................... 22 2 1 4.00 4 3 0 1 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTTAA.............................................................. 23 2 1 4.00 4 0 0 4 0 0 0
...............................................................................................CCGTCTTAAGGTTGTTGAGTTA............................................................... 22 2 1 4.00 4 0 0 4 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTTG............................................................... 22 1 1 4.00 4 1 2 1 0 0 0
...............................................................................................CCGTCTTAAGGTTGTTGAGTT................................................................ 21 1 1 4.00 4 2 0 2 0 0 0
.................................................................................................GTCCTAAGGTTGTTGAGTTT............................................................... 20 1 2 3.50 7 0 0 7 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTTTA.............................................................. 23 2 1 3.00 3 2 1 0 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTAA............................................................... 22 2 1 3.00 3 1 0 2 0 0 0
...............................................................................................CTGTCCTAAGGTTGTTGAGTT................................................................ 21 1 1 3.00 3 2 0 1 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGA................................................................... 18 0 2 3.00 6 1 1 4 0 0 0
...............................................................................................TTGTCCTAAGGTTGTTGAGTT................................................................ 21 2 2 3.00 6 3 0 3 0 0 0
...............................................................................................CCGTCTTAAGGTTGTTGAGTTT............................................................... 22 2 1 3.00 3 1 0 2 0 0 0
.................................................................................................GTCCTAAGGTTGTTGAGTT................................................................ 19 0 1 3.00 3 1 0 2 0 0 0
...............................................................................................TCGTCCTAAGGTTGTTGAGTT................................................................ 21 1 1 2.00 2 2 0 0 0 0 0
............................................................TCTTCAATCTCAGGACTCGCAT.................................................................................................. 22 0 1 2.00 2 0 0 2 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTTAT.............................................................. 23 1 1 2.00 2 0 0 1 0 1 0
...............................................................................................CCATCCTAAGGTTGTTGAGTT................................................................ 21 1 1 2.00 2 0 0 1 0 0 1
...............................................................................................CCGTTCTAAGGTTGTTGAGTTT............................................................... 22 2 1 2.00 2 1 0 1 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTGT............................................................... 22 2 1 2.00 2 0 2 0 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTTTAA............................................................. 24 3 1 2.00 2 0 0 2 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTTCT.............................................................. 23 0 1 2.00 2 0 2 0 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTG.................................................................... 17 0 2 1.50 3 0 0 3 0 0 0
...............................................................................................CCGTTCTAAGGTTGTTGAGTTG............................................................... 22 2 1 1.00 1 0 0 1 0 0 0
............................................................................................ATTCCGTCCTAAGGTTGTTGAGT................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................CCGTCCTAAGCTTGTTGAGTTTT.............................................................. 23 2 1 1.00 1 0 0 1 0 0 0
...............................................................................................CCGTCCTAATGTTGTTGAGTT................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................CTCTTCAATCTCAGGACTCGCAT.................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGCGTT................................................................ 21 1 1 1.00 1 0 0 1 0 0 0
.................................................................................................GTTCTAAGGTTGTTGAGTT................................................................ 19 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTTTTCG............................................................ 25 3 1 1.00 1 0 0 1 0 0 0
................................................................................................CGTCCTAAGGTTGTTGAGT................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................CCGTCCTAAGGTTGTCGAGTT................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................CCGTCCTAAGTTTGTTGAGTTT............................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGGGTT................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................CCGTCTTAAGGTTGTTGAGTTC............................................................... 22 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................CCGTCCTACGGTTGTTGAGTTT............................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTTTC.............................................................. 23 2 1 1.00 1 1 0 0 0 0 0
................................................................................................CGTCCTCAGGTTGTTGAGTTT............................................................... 21 2 1 1.00 1 0 0 1 0 0 0
.................................................................................TAATTAGCAGAATGCCGTCCTAAGGTTGTTGAGTTT............................................................... 36 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................CCCCCCTAAGGTTGTTGAGTTTT.............................................................. 23 3 1 1.00 1 0 0 1 0 0 0
.............................................................................................TGCCGTCCTAAGGTTGTTGAGT................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................CCTAAGGTTGTTGAGTT................................................................ 17 0 1 1.00 1 0 0 1 0 0 0
............................................................TCTTCAATCTCAGGACTCGCA................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTTTCT............................................................. 24 3 1 1.00 1 0 0 0 1 0 0
...............................................................................................CCGTTCTAAGGTTGTTGAGTT................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................GTCCTAAGGTTGTTGAGTTA............................................................... 20 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGGTT............................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTTGT.............................................................. 23 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTGAGTTTTT............................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................GCCGTCCTAAGGTTGTTGAGTTA............................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................CCGTCCTAAGGTTGTTAAGTT................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................CCGTCCTTAGGTTGTTGAGTTA............................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................CTCTTCAATCTCAGGACTCGCT................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................CCGTCCTAAAGTTGTTGAGTT................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................CCGTCCTAACGTTGTTGAGTT................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................GTCCTCAGGTTGTTGAGTT................................................................ 19 1 2 0.50 1 0 0 1 0 0 0
................................................................................................CGTCCTAAGGTTGTTGGGTTT............................................................... 21 2 2 0.50 1 0 0 1 0 0 0
................................................................................................CGTCCTAAGGTTGTTGCGTTA............................................................... 21 2 3 0.33 1 0 0 1 0 0 0
..................................................................................................TCCTAAGGTTGTTGAGTTT............................................................... 19 1 4 0.25 1 0 0 1 0 0 0
...................................................................................................CGTAAGGTTGTTGAGTT................................................................ 17 1 5 0.20 1 0 0 1 0 0 0
...................................................................................................CCTAAGGTTGTTGAGTTT............................................................... 18 1 6 0.17 1 0 0 1 0 0 0
..................................................................................................CCCTAAGGTTGTTGAGTTA............................................................... 19 2 14 0.14 2 0 0 2 0 0 0
...............................................................................................TTGTCCTAAGGTTGTTGAGT................................................................. 20 2 9 0.11 1 1 0 0 0 0 0
............................................................CTCTCAATCTCAGGACTCGCA................................................................................................... 21 3 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

AAAAAGGAAGGTCGAAGTTACGAACTCTGAAGTGTAGTCAAGGACTGGACTTGCGCACTGAGAAGTTAGAGTCCTGAGCGTATTAATCGTCTTACGGCAGGATTCCAACAACTCAAGACGCAAAGACCCGTAAAGTAGAAATACCGCTTCATGGACAAGGGAGTGAGGTTTCTGATTCGA

*************************************************..((((((((((.(((((..((((((.(((((..((((..........)))).))))).))))))..))))).)))))))..)))..******************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:44 AM