ID:

ssc-mir-671

 Coordinate:

chr18:6286693-6286772 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-56.5 -55.9 -55.9

Sense Strand Reads

ATGCTGACTACCTGGCGGCCCGAGCCCGGCTGGCTGGTGAACTGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTTTTCCGGGCCGTGGAGCCAGGGCTGGTGCAGAAGTTCTCCCTGCGTGACTGCAGCCCTC

*********************************************((((((.((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).)))).)).********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR1274763

ovary		 SRR139075

testes		 SRR1274764

testes		 SRR139076

testes
............................................................AGGAAGCCCTGGAGGGGCTGGAGG................................................................................................ 24 0 1 340.00 340 201 128 7 2 2 0
...................................................................................................TCCGGTTCTCAGGGCTCCACC............................................................ 21 0 1 156.00 156 61 55 32 7 1 0
............................................................AGGAAGCCCTGGAGGGGCTGGAT................................................................................................. 23 1 1 51.00 51 24 26 1 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAG................................................................................................. 23 0 1 37.00 37 19 18 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACCT........................................................... 22 0 1 37.00 37 9 10 16 2 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGA.................................................................................................. 22 0 1 29.00 29 14 14 1 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACT............................................................ 21 1 1 29.00 29 9 19 1 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCAC............................................................. 20 0 1 25.00 25 15 6 2 2 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGGT............................................................................................... 25 0 1 22.00 22 12 7 3 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGA................................................................................................ 24 1 1 22.00 22 17 4 1 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGT................................................................................................ 24 1 1 17.00 17 9 8 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCA.............................................................. 19 0 1 13.00 13 7 6 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCC............................................................... 18 0 1 12.00 12 6 6 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACA............................................................ 21 1 1 10.00 10 6 2 1 1 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCAT............................................................. 20 1 1 7.00 7 5 2 0 0 0 0
..................................................................................................CTCCGGTTCTCAGGGCTCCACC............................................................ 22 0 1 7.00 7 5 2 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACCAA.......................................................... 23 2 1 5.00 5 0 0 4 1 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACCTT.......................................................... 23 0 1 4.00 4 0 1 2 1 0 0
............................................................AGGAAGCCCTGGAGGGGCTGG................................................................................................... 21 0 1 4.00 4 3 1 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCT..................................................................................................... 19 0 1 3.00 3 0 3 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTC................................................................ 17 0 1 3.00 3 3 0 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAAT................................................................................................ 24 2 1 3.00 3 0 3 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGGAT.............................................................................................. 26 2 1 3.00 3 1 1 1 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCATT............................................................ 21 2 3 3.00 9 4 5 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCAAT............................................................ 21 2 2 2.50 5 1 3 0 1 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGAA............................................................................................... 25 2 2 2.00 4 1 3 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCATTT........................................................... 22 2 1 2.00 2 1 1 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACCA........................................................... 22 1 1 2.00 2 1 0 0 0 0 1
........................................ACTGGCAGGCCAGGAAGAGG........................................................................................................................ 20 0 1 2.00 2 1 0 1 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGGTT.............................................................................................. 26 1 1 2.00 2 1 1 0 0 0 0
.........................................CTGGCAGGCCAGGAAGAGG........................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGGA............................................................................................... 25 1 1 2.00 2 2 0 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGGATT............................................................................................. 27 3 1 2.00 2 2 0 0 0 0 0
..................................................................................................CTCCGGTTCTCAGGGCTCCACT............................................................ 22 1 1 2.00 2 1 1 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGTT............................................................................................... 25 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACCGA.......................................................... 23 2 1 2.00 2 0 0 0 2 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGAAT.............................................................................................. 26 3 2 1.50 3 1 2 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGC.................................................................. 15 0 4 1.25 5 2 3 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACAA........................................................... 22 2 2 1.00 2 0 0 0 2 0 0
...................................................................................................TTCGGTTCTCAGGGCTCCACC............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCATA............................................................ 21 2 1 1.00 1 1 0 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGTTTT............................................................................................. 27 3 1 1.00 1 1 0 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAAC................................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACCTTT......................................................... 24 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................CCGGTTCTCAGGGCTCCA.............................................................. 18 0 1 1.00 1 0 1 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGGCG................................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACCCT.......................................................... 23 1 1 1.00 1 0 1 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGGTTT............................................................................................. 27 2 1 1.00 1 0 1 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGTTC.............................................................................................. 26 2 1 1.00 1 0 1 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGATT................................................................................................ 24 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCCGGTCCTCAGGGCTCCACC............................................................ 21 1 1 1.00 1 0 0 1 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTTGAGG................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
............................................................GGGAAGCCCTGGAGGGGCTGGAG................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGGTTTT............................................................................................ 28 2 1 1.00 1 1 0 0 0 0 0
............................................................AGGAAACCCTGGAGGGGCTGGAGG................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGGAA.............................................................................................. 26 2 1 1.00 1 0 1 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGGAAT............................................................................................. 27 3 1 1.00 1 0 0 1 0 0 0
...................................................................................................TCCGGTTCCCAGGGCTCCACC............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACCAC.......................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCAA............................................................. 20 1 1 1.00 1 0 1 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGGGG................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGC................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................ATCCGGTTCTCAGGGCTCCACCAT.......................................................... 24 2 1 1.00 1 0 1 0 0 0 0
.............................................................GGAAGCCCTGGAGGGGCTGGAT................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCGCCT........................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................AGGAAGCCCGGGAGGGGCTGGAGG................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACCTTTTT....................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CGGTTCTCAGGGCTCCA.............................................................. 17 0 2 1.00 2 0 0 0 2 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGGTA.............................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
............................................................AGGAAGCCCTGTAGGGGCTGGAGG................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCCGGTTCTTAGGGCTCCACC............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................CAGGAAGCCCTGGAGGGGCTGGAGT................................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACAT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACCTAAA........................................................ 25 3 1 1.00 1 0 0 0 1 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACCAT.......................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CGGTTCTCAGGGCTCCACC............................................................ 19 0 1 1.00 1 0 0 0 1 0 0
............................................................AGGAGGCCCTGGAGGGGCTGGAGG................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
............................................................AAGAAGCCCTGGAGGGGCTGGAGG................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAGGTAT............................................................................................. 27 2 1 1.00 1 0 0 0 0 0 1
............................................................GGGAAGCCCTGGAGGGGCTGGAT................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
............................................................AGGAAGCCCTGGAGGGG....................................................................................................... 17 0 5 0.80 4 4 0 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCAA.............................................................. 19 1 3 0.67 2 1 1 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCAATT........................................................... 22 2 2 0.50 1 0 1 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGC...................................................................................................... 18 0 2 0.50 1 1 0 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCACCAAAT........................................................ 25 3 2 0.50 1 0 0 1 0 0 0
............................................................AGGAAGCCCTGGGGGGGCTGGAGG................................................................................................ 24 1 2 0.50 1 1 0 0 0 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGAAA................................................................................................ 24 2 2 0.50 1 0 1 0 0 0 0
............................................................AGGGAGCCCTGGAGGGGCTGG................................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0
...................................................................................................TCTGGTTCTCAGGGCTCCACC............................................................ 21 1 2 0.50 1 1 0 0 0 0 0
............................................................AAGGAGCCCTGGAGGGGCTGGAGG................................................................................................ 24 2 2 0.50 1 1 0 0 0 0 0
...........................................................CAGGAAGCCCTGGAGGGGCTGGAAT................................................................................................ 25 3 2 0.50 1 0 1 0 0 0 0
.....................................................................................................CGGTTCTCAGGGCTCCACT............................................................ 19 1 3 0.33 1 1 0 0 0 0 0
............................................................AGGAAGCCCTGGAGGG........................................................................................................ 16 0 20 0.30 6 1 3 0 2 0 0
............................................................AGGAAGCCCTGGAGGGGCTGGACT................................................................................................ 24 2 4 0.25 1 1 0 0 0 0 0
............................................................AGGAAGCCCTGGAGGGCCTGGAT................................................................................................. 23 2 5 0.20 1 0 1 0 0 0 0
.....................................................................................................CGGTTCTCAGGGCTCCACA............................................................ 19 1 5 0.20 1 0 0 1 0 0 0
...................................................................................................TCCGGTTCTCACGGCTCCAA............................................................. 20 2 5 0.20 1 0 0 0 1 0 0
...................................................................................................TCCGGTTCTCAGGGCTCA............................................................... 18 1 6 0.17 1 0 1 0 0 0 0
...............................................................AAGCCCTGGAGGGGCT..................................................................................................... 16 0 7 0.14 1 1 0 0 0 0 0
...................................................................................................TCCGGTTCTCAGGGCTCCAAAA........................................................... 22 3 18 0.11 2 2 0 0 0 0 0
....................................................................................TGATGGATGTTTTCC................................................................................. 15 0 19 0.11 2 2 0 0 0 0 0
............................................................AGGAAGCCCTGGAGG......................................................................................................... 15 0 20 0.10 2 0 2 0 0 0 0
....................................................................................................................CACGTTTTCCGCGCCGT............................................... 17 2 20 0.05 1 0 0 0 1 0 0
...................................................................................................TCCGGTTCTCAGGGCTCTT.............................................................. 19 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TACGACTGATGGACCGCCGGGCTCGGGCCGACCGACCACTTGACCGTCCGGTCCTTCTCCTCCTTCGGGACCTCCCCGACCTCCACTACCTACAAAAGGAGGCCAAGAGTCCCGAGGTGGAAAAGGCCCGGCACCTCGGTCCCGACCACGTCTTCAAGAGGGACGCACTGACGTCGGGAG

*********************************************((((((.((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).)))).)).********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes
................................................................................................AGGAGGCCAAGAGTCCCGAGGT.............................................................. 22 0 1 1.00 1 1
...........................................................................................................AGTCCCGATGTGGAAAAGAC..................................................... 20 2 15 0.07 1 1

Generated: 09/01/2015 at 11:31 AM