ID:

ssc-mir-628

 Coordinate:

chr1:129013474-129013553 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.5 -34.3

Sense Strand Reads

TTCATGAAGGTGCAGCACCAGACTAGTCCTTAATATCGGAGATAGCTGTTGTGTCACTTCCTCATGCTGACATATTTACTAGAGGGTAAAGTTAACAACCTTCTAGTAAGAGTGGCAGTCGAAGGGAAGGGCTCATCTGACTTCTGGAAACCTGTGTTAAACTATAGTGCTTTGAACCTT

************************************************.((.(((.((((((...((((.(((.(((((((((((((..........))))))))))))).))).))))....))))))))).))....***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066810

testes		 SRR1274764

testes		 SRR066809

ovary		 SRR139076

testes		 SRR1274763

ovary
...............................................................ATGCTGACATATTTACTAGAGG............................................................................................... 22 0 1 374.00 374 84 150 44 65 25 6
...............................................................ATGCTGACATATTTACTAGAG................................................................................................ 21 0 1 91.00 91 65 11 1 2 12 0
...............................................................ATGCTGACATATTTACTAGAGGGT............................................................................................. 24 0 1 82.00 82 16 30 11 13 7 5
...............................................................ATGCTGACATATTTACTAGAGGA.............................................................................................. 23 1 1 71.00 71 37 5 11 6 9 3
...............................................................ATGCTGACATATTTACTAGAGGG.............................................................................................. 23 0 1 29.00 29 14 7 1 3 4 0
...............................................................ATGCTGACATATTTACTAGA................................................................................................. 20 0 1 27.00 27 9 8 5 2 3 0
...............................................................ATGCTGACATATTTACTAGAGA............................................................................................... 22 1 1 21.00 21 8 3 5 2 3 0
...............................................................ATGCTGACATATTTACTAGAGGT.............................................................................................. 23 1 1 12.00 12 8 1 1 2 0 0
.....................................................................................................TCTAGTAAGAGTGGCAGTCGAAG........................................................ 23 0 1 11.00 11 0 0 11 0 0 0
.....................................................................................................TCTAGTAAGAGTGGCAGTCGA.......................................................... 21 0 1 8.00 8 2 0 3 0 0 3
.....................................................................................................TCTAGTAAGAGTGGCAGTCGAAA........................................................ 23 1 1 6.00 6 0 0 6 0 0 0
....................................................................................................TTCTAGTAAGAGTGGCAGTCGA.......................................................... 22 0 1 6.00 6 0 0 5 0 0 1
...............................................................ATGCTGACATATTTACTAGAGGGA............................................................................................. 24 1 3 4.33 13 5 1 5 1 1 0
...............................................................ATGCTGACATATTTACTAGAGGGTT............................................................................................ 25 1 1 4.00 4 2 1 0 0 1 0
.....................................................................................................TCTAGTAAGAGTGGCAGTCGAAGT....................................................... 24 1 1 4.00 4 0 0 4 0 0 0
...............................................................ATGTTGACATATTTACTAGAGGT.............................................................................................. 23 2 1 4.00 4 4 0 0 0 0 0
...............................................................ATGCTGACATATTTACTAG.................................................................................................. 19 0 1 4.00 4 3 0 0 0 1 0
...............................................................ATGCTGACATATTTACTAGAGGAT............................................................................................. 24 1 1 3.00 3 2 1 0 0 0 0
................................................................TGCTGACATATTTACTAGAGGGT............................................................................................. 23 0 1 3.00 3 0 2 0 1 0 0
.....................................................................................................TCTAGTAAGAGTGGCAGTCGAAT........................................................ 23 1 1 3.00 3 0 0 3 0 0 0
.....................................................................................................TCTAGTAAGAGTGGCAGGCGA.......................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...............................................................ATGCTGACATATTTACTAGAGGAA............................................................................................. 24 2 3 2.00 6 3 0 1 0 2 0
...............................................................ATGCTGACATGTTTACTAGAGG............................................................................................... 22 1 1 2.00 2 0 1 0 0 1 0
...............................................................ATGCTGACATATTTACTACAGGA.............................................................................................. 23 2 1 2.00 2 2 0 0 0 0 0
...............................................................ATGTTGACATATTTACTAGAGG............................................................................................... 22 1 1 2.00 2 0 0 0 2 0 0
...............................................................ATGCTGACATATTTACTA................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0
...............................................................ATGCTGACATATTTACTAGAGT............................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..............................................................CATGCTGACATATTTACTAGAGG............................................................................................... 23 0 1 2.00 2 0 1 0 0 1 0
...............................................................ATGCTGACATATTTACTAGAGAA.............................................................................................. 23 2 4 1.25 5 3 0 2 0 0 0
.................................................................GCTGACATATTTACTAGAGGGTAA........................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0
................................................................TGCTGACATATTTACTAGAGGGTA............................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................GGAAGGGCTCATCTGACTTCTGGAAACCA........................... 29 1 1 1.00 1 0 0 0 0 0 1
................................................................TGATGACATATTTACTAGAGG............................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................TCTAGTAAGAGTGGCAGTC............................................................ 19 0 1 1.00 1 0 0 1 0 0 0
...........................................AGCTGTTGTGTCACTTCCTC..................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0
.....................................................................................................TCTAGTAAGAGTGGCAGTCG........................................................... 20 0 1 1.00 1 0 0 1 0 0 0
...............................................................ATGCTGACATATTTATTAGAGGGT............................................................................................. 24 1 1 1.00 1 0 0 0 1 0 0
....................................................................................................TTCTAGTAAGAGTGGCAGGCGATT........................................................ 24 3 1 1.00 1 1 0 0 0 0 0
...............................................................ATGCTGACATATTTACTAGAGAT.............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TCTAGTAAGAGTGGCAGTCGAA......................................................... 22 0 1 1.00 1 0 0 1 0 0 0
...............................................................ATGCTGACATATTTACTAGAGGGTAT........................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
...............................................................ATGCTGACATATTTCCTAGAGG............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................ATGCTGATATATTTACTAGAGGA.............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TCTAGTAAGAGTGGCAGTTGA.......................................................... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................TTCTAGTAAGAGTGTCAGTCGA.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................ATACTGACATATTTACTAGAGGA.............................................................................................. 23 2 1 1.00 1 0 0 0 0 1 0
.................................................................GTTGACATATTTACTAGAGGGTAA........................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0
....................................................................................................TTCTAGTAAGAGTGGCAGTCG........................................................... 21 0 1 1.00 1 0 0 1 0 0 0
...............................................................ATGCTGACATATTTACTAGG................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
...............................................................ATGCTGACATATTTACTAGAGGTA............................................................................................. 24 2 3 1.00 3 0 1 1 0 1 0
................................................................TGCTGACATATTTACTAGAGGG.............................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
...............................................................ATGCTGACATATTTACTAGAGGTT............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................ATGCTGACATATTTACTAGAGGGC............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TCTAGTAAGAGTGGCAG.............................................................. 17 0 1 1.00 1 0 0 1 0 0 0
..............................................................CATGCTGACATATTTACTAGAGGA.............................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................TTCTAGTAAGAGTGGCAGGCGA.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..............................................................CATGCTGACATATTTACTAGAGGT.............................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
...............................................................ATGCTGACATATTTACCAGAGG............................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...............................................................ATGCTGACATATTTACTAGATGA.............................................................................................. 23 2 2 0.50 1 1 0 0 0 0 0
................................................................TGCTGACATATTTACTAGAGGTA............................................................................................. 23 2 3 0.33 1 0 1 0 0 0 0
...............................................................ATGCTGACATATTTACTAGAGGAAT............................................................................................ 25 3 5 0.20 1 0 0 1 0 0 0
...............................................................ATGCTGACATATTTACTAGAAA............................................................................................... 22 2 5 0.20 1 0 0 0 0 1 0
...............................................................ATGCTGACATATCTCCTAGAG................................................................................................ 21 2 7 0.14 1 1 0 0 0 0 0

Anti-sense strand reads

AAGTACTTCCACGTCGTGGTCTGATCAGGAATTATAGCCTCTATCGACAACACAGTGAAGGAGTACGACTGTATAAATGATCTCCCATTTCAATTGTTGGAAGATCATTCTCACCGTCAGCTTCCCTTCCCGAGTAGACTGAAGACCTTTGGACACAATTTGATATCACGAAACTTGGAA

*****************************************.((.(((.((((((...((((.(((.(((((((((((((..........))))))))))))).))).))))....))))))))).))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:18 AM