ID:

ssc-mir-615

 Coordinate:

chr5:20147919-20148006 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-58.8 -58.7 -58.3
mature

  1. ssc-mir-615  chr5:19690669-19690689 -
  2. ssc-mir-615  chr5:20147976-20147996 +
star

  1. ssc-mir-615  chr5:19690712-19690732 -
  2. ssc-mir-615  chr5:20147933-20147953 +

Sense Strand Reads

GCGGAGCCGGCTCGGCCGCCGCTTGCCGCTCCGGAGGATTCCAGCGACTCGGGAGGGGCGGGAGGGGGCTCCCCGGTGCTCGGATCTCGAGGGTGCTTATTGTTCGGTCCGAGCCTGGGTCTCCCTCTCCCCCCCACCCCCTCAGCCCCTCCGGCTGCTGAGTGAAGGCTGCGGCGGAAAGTTTCCTG

*************************************************.(((.((((.(((((((((...(((((.(((((((((..((.(((....))).)).))))))))))))))...))))))))))))).)))....********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR1274763

ovary		 SRR139075

testes
...........................................................................................................TCCGAGCCTGGGTCTCCCTCT............................................................ 21 0 2 18.00 36 19 11 4 2
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTT........................................................... 22 1 3 6.33 19 9 5 4 1
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTTA.......................................................... 23 2 3 5.67 17 14 0 3 0
................................................................GGGGGTCCCCGGTGCTCGGATC...................................................................................................... 22 1 2 5.50 11 4 7 0 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTTT.......................................................... 23 2 3 4.33 13 8 4 1 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTTAA......................................................... 24 3 4 3.00 12 11 0 1 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTTAT......................................................... 24 3 3 3.00 9 8 1 0 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTAA.......................................................... 23 2 2 2.50 5 4 0 1 0
................................................................GGGGCTCCCCGGTGCTCGGAT....................................................................................................... 21 0 2 2.00 4 0 0 0 4
...........................................................................................................TCCGAGCCTGGGTCTCCCTC............................................................. 20 0 2 2.00 4 3 0 1 0
................................................................GGGGCTCCCCGGTGCTCGGATCT..................................................................................................... 23 0 2 1.50 3 1 0 0 2
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTTTT......................................................... 24 3 3 1.33 4 2 2 0 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTA........................................................... 22 1 2 1.00 2 1 0 1 0
................................................................GGGGGTCCCCGGTGCTCGGAT....................................................................................................... 21 1 2 1.00 2 1 1 0 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTTGA......................................................... 24 3 3 0.67 2 2 0 0 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCA............................................................ 21 1 2 0.50 1 1 0 0 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTTTA......................................................... 24 3 4 0.50 2 2 0 0 0
................................................................GGGGCTCCCCGGTGCTCGGATC...................................................................................................... 22 0 2 0.50 1 0 0 1 0
...............................................CTCGGGAGGGGCGGGAG............................................................................................................................ 17 0 2 0.50 1 1 0 0 0
................................................................GGGGCTCCCCGGTGCTCGGAA....................................................................................................... 21 1 2 0.50 1 0 0 0 1
...................................................................................................TTGTTCGGTCCGAGCCT........................................................................ 17 0 2 0.50 1 0 0 1 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCC............................................................ 21 1 2 0.50 1 0 1 0 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTAT.......................................................... 23 2 2 0.50 1 1 0 0 0
................................................................GGGGCTCCCCGGTGGTCGGAT....................................................................................................... 21 1 2 0.50 1 0 0 0 1
................................................................GGGGCTCCCCGGTGCTCGGATA...................................................................................................... 22 1 2 0.50 1 0 0 0 1
.............................................................................................................CGAGCCTGGGTCTCCCTCT............................................................ 19 0 2 0.50 1 0 0 0 1
...........................................................................................................TCCGAGCCTGGGTCTCCCTAT............................................................ 21 1 2 0.50 1 0 1 0 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTAG.......................................................... 23 2 2 0.50 1 1 0 0 0
................................................................GGCGCTCCCCGGTGCTCGGAT....................................................................................................... 21 1 2 0.50 1 0 0 0 1
...........................................................................................................TCCGAGCCTGGGTCTCCCT.............................................................. 19 0 2 0.50 1 1 0 0 0
................................................................GGGGCTCCCCGGTGCTCGGATCTCGAGGGTGCTTATTGTTCGGTCCGAGCCTGGGTCTCCCTCT............................................................ 64 0 2 0.50 1 0 0 1 0
...........................................................................................................TCCGAGCCTGGGTCTCCTTCT............................................................ 21 1 3 0.33 1 1 0 0 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTTAG......................................................... 24 3 4 0.25 1 1 0 0 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCCT........................................................... 22 2 6 0.17 1 0 0 1 0
...........................................................................................................TCCGAGCCTGGGTCTCCCTCTAGT......................................................... 24 3 6 0.17 1 1 0 0 0

Anti-sense strand reads

CGCCTCGGCCGAGCCGGCGGCGAACGGCGAGGCCTCCTAAGGTCGCTGAGCCCTCCCCGCCCTCCCCCGAGGGGCCACGAGCCTAGAGCTCCCACGAATAACAAGCCAGGCTCGGACCCAGAGGGAGAGGGGGGGTGGGGGAGTCGGGGAGGCCGACGACTCACTTCCGACGCCGCCTTTCAAAGGAC

*********************************************.(((.((((.(((((((((...(((((.(((((((((..((.(((....))).)).))))))))))))))...))))))))))))).)))....************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:38 AM