ID:

ssc-mir-582

 Coordinate:

chr16:41335754-41335830 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.5 -42.5 -42.5

Sense Strand Reads

acctcgtccagcaaacctctctctagtagactgcaacacgtcaatctgtgctctttggttacagttgttcaaccagttactaatctaactaactgtaaccggttgaacaactgaacccaaagggtgCAAAGTGGAAACATTTCAATGAGAAGTCGGCTCTGGACAAAGGAAACACCG

********************************************..((((((((((((...(((((((((((((.(((((..............))))).)))))))))))))...))))))))))))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139075

testes		 SRR1274763

ovary		 SRR1274764

testes		 SRR066810

testes		 SRR139076

testes
...............................................................................................TAACCGGTTGAACAACTGAAC............................................................. 21 0 1 28.00 28 2 19 0 2 1 4
...............................................................................................TAACCGGTTGAACAACTGAACCC........................................................... 23 0 1 22.00 22 7 1 10 4 0 0
...........................................................TACAGTTGTTCAACCAGTTACT................................................................................................ 22 0 1 20.00 20 12 2 0 2 4 0
...............................................................................................TAACCGGTTGAACAACTGAACC............................................................ 22 0 1 15.00 15 2 0 7 4 1 1
...............................................................................................TAACCGGTTGAACAACTGAA.............................................................. 20 0 1 12.00 12 0 6 1 0 1 4
..........................................................TTACAGTTGTTCAACCAGTTACT................................................................................................ 23 0 1 11.00 11 5 2 2 1 1 0
................................................................................................AACCGGTTGAACAACTGAACCC........................................................... 22 0 1 10.00 10 1 2 4 2 0 1
..........................................................TTACAGTTGTTCAACCAGTTAC................................................................................................. 22 0 1 9.00 9 2 0 3 4 0 0
................................................................................................AACCTGTTGAACAACTGAACCC........................................................... 22 1 1 6.00 6 3 0 0 0 3 0
...............................................................................................TAACCGGTTGAACAACTGAAA............................................................. 21 1 1 5.00 5 4 1 0 0 0 0
...........................................................TACAGTTGTTCAACCAGTTAC................................................................................................. 21 0 1 5.00 5 1 3 0 0 1 0
............................................................ACAGTTGTTCAACCAGTTACT................................................................................................ 21 0 1 4.00 4 1 0 1 1 1 0
..............................................................................................GTAACCGGTTGAACAACTGAAC............................................................. 22 0 1 4.00 4 1 3 0 0 0 0
...............................................................................................TAACCTGTTGAACAACTGAACC............................................................ 22 1 1 4.00 4 3 0 0 0 1 0
...............................................................................................TAACCTGTTGAACAACTGAAC............................................................. 21 1 2 3.50 7 6 0 0 0 1 0
...............................................................................................TAACCGGTTGAACAACTGAACCCT.......................................................... 24 1 1 3.00 3 0 0 0 1 1 1
................................................................................................AACCTGTTGAACAACTGAAC............................................................. 20 1 3 3.00 9 5 0 0 0 4 0
................................................................................................AACCGGTTGAACAACTGAACC............................................................ 21 0 1 2.00 2 0 0 1 1 0 0
...............................................................................................TAACCGGTTGAACAACTGAACCCA.......................................................... 24 0 1 2.00 2 0 1 0 0 0 1
...............................................................................................TAACCTGTTGAACAACTGAACCC........................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..........................................................TTACAGTTGTTCAACCAGTT................................................................................................... 20 0 1 2.00 2 0 1 0 0 1 0
................................................................................................AACCGGTTGAACAACTGAAC............................................................. 20 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................GTAACCGGTTGAACAACTGAAA............................................................. 22 1 1 1.00 1 0 0 0 0 1 0
...............................................................................................TAACCGGTTGAACAACTGA............................................................... 19 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................GTAACCGGTTGAACAACTGAA.............................................................. 21 0 1 1.00 1 0 1 0 0 0 0
..........................................................TTACAGTTGTTCAACCAGTTACA................................................................................................ 23 1 1 1.00 1 0 0 0 0 1 0
..................................................................................................CCTGTTGAACAACTGAACCCA.......................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................TACAGTTGTTCAACCAGTT................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
...........................................................TACAGTTGTTCAACCAGTTA.................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1
...............................................................................................TAACCTGTTGAACAACTGAAAC............................................................ 22 2 1 1.00 1 0 0 0 0 1 0
................................................................................................AACCTGTTGAACAACTGAACCCT.......................................................... 23 2 2 0.50 1 1 0 0 0 0 0
...............................................................................................TAACCTGTTGAACAACTGAAA............................................................. 21 2 4 0.25 1 0 0 0 0 1 0
.....................................................................................................GTTGAACAACTGAACC............................................................ 16 0 5 0.20 1 0 0 0 0 1 0
...............................................................................................TAACTGATTGAACAACTGAAC............................................................. 21 2 8 0.13 1 0 0 0 0 1 0
...............................................................................................TAACCTGTTGAACAACTGAAT............................................................. 21 2 10 0.10 1 1 0 0 0 0 0

Anti-sense strand reads

TGGtGgtGGTgGTTTGGtGtGtGtTgtTgTGtgGTTGTGgtGTTtGtgtgGtGtttggttTGTgttgttGTTGGTgttTGtTTtGtTTGtTTGtgtTTGGggttgTTGTTGtgTTGGGTTTgggtgGTTTCACCTTTGTAAAGTTACTCTTCAGCCGAGACCTGTTTCCTTTGTGGC

**********************************************..((((((((((((...(((((((((((((.(((((..............))))).)))))))))))))...))))))))))))...******************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:28 AM