ID:

ssc-mir-574

 Coordinate:

chr8:31672459-31672538 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-60.9 -60.7 -60.6
mature

star

  1. chr1:7313480-7313502 +
  2. chr10:1840651-1840673 +
  3. chr10:48049919-48049941 -
  4. chr10:48571881-48571903 +
  5. chr11:1921071-1921093 +
  6. chr13:156458941-156458963 +
  7. chr14:151911297-151911319 -
  8. chr16:84432412-84432434 -
  9. chr16:84619299-84619321 -
  10. chr16:86120176-86120198 -
  11. chr16:86233275-86233297 -
  12. chr16:86412115-86412137 -
  13. chr17:34513680-34513702 +
  14. chr2:112136705-112136727 +
  15. chr4:131168980-131169002 -
  16. chr7:4868636-4868658 +
  17. chr8:4093965-4093987 -
  18. ssc-mir-574  chr8:31672473-31672495 +
  19. chr8:139324924-139324946 -
  20. chr9:43071640-43071662 -
  21. chr9:83862715-83862737 -
  22. chrX:59496527-59496549 -

Sense Strand Reads

GACCGGCCTTGGGGGTGAAGGTCCGGGACGGCGCGGCCGAGGGCCCtgcgtgggtgcgggcgtgtgagtgtgtgtgtgtgagtgtgtgtCGCTCCGGGTCCACGCTCATGCACACACCCACACGCCCGCACTCCGGCTCTGCCCCCTCGGCCGGCGTGAACCCCTGCGGAGCCTGGCTTG

*************************************************..(((((((((((((((...(((((((((((((((((..((......))..))))))))))))))))).)))))))))))))))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139075

testes		 SRR1274763

ovary		 SRR066810

testes		 SRR139076

testes		 SRR1274764

testes
....................................................................................................CACGCTCATGCACACACCCACA.......................................................... 22 0 1 4807.00 4807 2861 890 511 446 85 14
....................................................................................................CACGCTCATGCACACACCCAC........................................................... 21 0 1 773.00 773 323 195 181 61 12 1
....................................................................................................CACGCTCATGCACACACCCACT.......................................................... 22 1 1 342.00 342 239 25 38 40 0 0
....................................................................................................CACGCTCATGCACACACCCA............................................................ 20 0 1 320.00 320 150 45 96 29 0 0
....................................................................................................CACGCTCATGCACACACCCACAA......................................................... 23 1 1 143.00 143 22 84 26 2 9 0
....................................................................................................CACGCTCATGCACACACCC............................................................. 19 0 1 84.00 84 31 8 35 10 0 0
.....................................................................................................ACGCTCATGCACACACCCACA.......................................................... 21 0 1 61.00 61 17 30 12 1 1 0
....................................................................................................CACGCTCATGCACACACCCACAT......................................................... 23 1 2 55.50 111 22 71 12 2 4 0
....................................................................................................CACGCTCATGCACACACCCAT........................................................... 21 1 1 51.00 51 18 27 4 2 0 0
.....................................................................................................ACGCTCATGCACACACCCAC........................................................... 20 0 1 18.00 18 1 13 3 0 1 0
....................................................................................................CACGCTCATGCACACACC.............................................................. 18 0 1 16.00 16 6 4 4 2 0 0
....................................................................................................CACGCTCATGCACACACCCACAG......................................................... 23 1 1 15.00 15 1 7 6 1 0 0
................................................................TGAGTGTGTGTGTGTGAGTGTGT............................................................................................. 23 0 20 12.50 250 104 17 9 119 0 1
................................................................TGAGTGTGTGTGTGTGAGTGT............................................................................................... 21 0 20 11.70 234 0 18 15 200 0 1
....................................................................................................CACGCTCATGCACATACCCACA.......................................................... 22 1 1 10.00 10 5 5 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCACG.......................................................... 22 1 1 10.00 10 2 4 3 1 0 0
....................................................................................................CACGCTCATGCACACACCCATA.......................................................... 22 1 1 9.00 9 5 0 3 0 1 0
.....................................................................................................ACGCTCATGCACACACCCA............................................................ 19 0 1 8.00 8 1 3 3 0 1 0
....................................................................................................CACGCTCATGCACACACCCAA........................................................... 21 1 4 7.75 31 3 12 14 1 1 0
....................................................................................................CACGCTCATGCACACACCTACA.......................................................... 22 1 1 7.00 7 0 4 0 0 3 0
....................................................................................................TACGCTCATGCACACACCCACA.......................................................... 22 1 1 7.00 7 1 3 0 2 1 0
....................................................................................................CACGCTCATGCCCACACCCACA.......................................................... 22 1 1 7.00 7 2 4 0 0 1 0
....................................................................................................CACGCTCATGCACACACCCACC.......................................................... 22 1 1 7.00 7 4 2 0 0 1 0
................................................................TGAGTGTGTGTGTGTGAGTGTG.............................................................................................. 22 0 20 6.35 127 60 0 0 67 0 0
....................................................................................................CACGCTCATGCATACACCCACA.......................................................... 22 1 1 6.00 6 1 3 1 1 0 0
.....................................................................................................ACGCTCATGCACACACCCACAA......................................................... 22 1 1 5.00 5 0 5 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCAAA.......................................................... 22 1 2 5.00 10 2 4 4 0 0 0
....................................................................................................CACGCTTATGCACACACCCACA.......................................................... 22 1 1 4.00 4 1 3 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCAG........................................................... 21 1 1 4.00 4 1 2 1 0 0 0
....................................................................................................CACGCTCATGCACACATCCACA.......................................................... 22 1 2 4.00 8 1 7 0 0 0 0
.....................................................................................................ACGCTCATGCACACACCCACT.......................................................... 21 1 1 4.00 4 1 1 2 0 0 0
....................................................................................................CACGCTCATGCACACACCCCC........................................................... 21 1 1 3.00 3 0 2 0 0 1 0
....................................................................................................CACGTTCATGCACACACCCACA.......................................................... 22 1 3 3.00 9 0 9 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCACAC......................................................... 23 0 1 3.00 3 0 2 0 1 0 0
....................................................................................................CACGCTCATGCACACGCCCACA.......................................................... 22 1 1 3.00 3 2 1 0 0 0 0
................................................................TGAGTGTGTGTGTGTGAGTGTGTG............................................................................................ 24 0 20 2.70 54 24 5 0 25 0 0
....................................................................................................CACGCTCATGCGCACACCCACA.......................................................... 22 1 2 2.50 5 1 3 0 1 0 0
....................................................................................................CACGCTCATGCACACACCCT............................................................ 20 1 2 2.50 5 2 1 2 0 0 0
................................................................TGAGTGTGTGTGTGTGAGTGTGTGT........................................................................................... 25 0 19 2.37 45 20 5 2 17 0 1
....................................................................................................CACGCTCATGCACACACCCACAAT........................................................ 24 2 4 2.25 9 1 6 2 0 0 0
....................................................................................................CACGCTCATGCACCCACCCAC........................................................... 21 1 1 2.00 2 0 2 0 0 0 0
....................................................................................................CACGCTCATGTACACACCCACA.......................................................... 22 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................................ACGCTCATGCACACACCTACA.......................................................... 21 1 1 2.00 2 1 1 0 0 0 0
....................................................................................................CACGCTCATGCACCCACCCACA.......................................................... 22 1 1 2.00 2 0 1 0 0 1 0
....................................................................................................CACGCTCATGCACACACCCAGA.......................................................... 22 1 1 2.00 2 0 0 1 0 1 0
....................................................................................................CACGCTCCTGCACACACCCACA.......................................................... 22 1 1 2.00 2 1 1 0 0 0 0
...................................................................................................CCACGCTCATGCACACACCCACA.......................................................... 23 0 1 2.00 2 1 0 1 0 0 0
....................................................................................................CACGCTCATGCACACACCAACA.......................................................... 22 1 1 2.00 2 0 1 0 0 1 0
....................................................................................................CACGCTCATGCACACACCCATT.......................................................... 22 2 11 1.73 19 13 1 0 5 0 0
....................................................................................................CACGCTCATGCGCACACCCAC........................................................... 21 1 2 1.50 3 2 1 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCACTT......................................................... 23 2 3 1.33 4 3 0 0 1 0 0
....................................................................................................CACGCTCATGCACACACCCACATT........................................................ 24 2 4 1.25 5 4 0 1 0 0 0
................................................................TGAGTGTGTGTGTGTGAGTG................................................................................................ 20 0 20 1.20 24 10 2 2 10 0 0
....................................................................................................CACGCTCATGCATACACCCAC........................................................... 21 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCATAA......................................................... 23 2 1 1.00 1 0 0 0 0 1 0
....................................................................................................CACGCTCATGCACGCACCCACA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0
....................................................................TGTGTGTGTGTGAGTGTGTGTCGCT....................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0
....................................................................................................CCCGCTCATGCACACACCCACA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................TACGCTCATGCACACACCCACAA......................................................... 23 2 1 1.00 1 0 0 1 0 0 0
....................................................................................................CGCGCTCATGCACACACCCACA.......................................................... 22 1 2 1.00 2 1 1 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCACAAGC....................................................... 25 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCGCA.......................................................... 22 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................CACGCTCATGCACACACCCATAAG........................................................ 24 2 1 1.00 1 0 0 1 0 0 0
..............................................TGCGTGGGTGCGGGCGTG.................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
.............................................CTGCGTGGGTGCGGGCGTG.................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCACAAA........................................................ 24 2 7 1.00 7 1 4 2 0 0 0
....................................................................................................CACGCTCATGCACACTCCCAC........................................................... 21 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................CACGCTCACGCACACACCCACA.......................................................... 22 1 3 1.00 3 2 1 0 0 0 0
............................................CCTGCGTGGGTGCGGGCGTGT................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................CACCCTCATGCACACACCCACA.......................................................... 22 1 2 1.00 2 0 2 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCCCA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................AACGCTCATGCACACACCCACA.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................CACGCTCATACACACACCCACA.......................................................... 22 1 4 1.00 4 3 1 0 0 0 0
..................................................................................................TCCACGCTCATGCACACACCCA............................................................ 22 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................CGCGCTCATGCACACACCCAC........................................................... 21 1 2 1.00 2 2 0 0 0 0 0
....................................................................................................CACGCTCATGCACTCACCCACA.......................................................... 22 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................CACGCTCATGCACACACCCACTA......................................................... 23 2 1 1.00 1 0 0 0 1 0 0
....................................................................................................CACGCTCATGCAGACACCCACA.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................CACGCTCATGCACATACCCAC........................................................... 21 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGAACACACCCA............................................................ 20 1 1 1.00 1 0 0 0 1 0 0
....................................................................................................CACGCTAATGCACACACCCACA.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................GACGCTCATGCACACACCCACAA......................................................... 23 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCACAAG........................................................ 24 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................ACGCTCATGCACACACCCACC.......................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................ACGCTCATGCACACACCCAT........................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................ACGCTCATGCACACACCCACAC......................................................... 22 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGCATACACCCA............................................................ 20 1 1 1.00 1 0 0 0 0 1 0
.....................................................................................................ACGCTCATGCACACACCCACAT......................................................... 22 1 2 1.00 2 0 1 1 0 0 0
....................................................................................................TACGCTCATGCACACACCCAC........................................................... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................CACGCTCATGCACACAGCCAC........................................................... 21 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGGACACACCCACA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................GGGGGTCACGCTCATGCACACACCCACA.......................................................... 28 3 1 1.00 1 0 0 0 1 0 0
....................................................................................................CACGCTCATGCACACACCCTTA.......................................................... 22 2 4 0.75 3 3 0 0 0 0 0
....................................................................................................CACGCTCGTGCACACACCCACA.......................................................... 22 1 3 0.67 2 2 0 0 0 0 0
....................................................................................................CACGCTCATGCATACACCCACT.......................................................... 22 2 3 0.67 2 2 0 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCCCAA......................................................... 23 2 3 0.67 2 0 1 0 0 1 0
....................................................................................................CACGCTCATGCACACACCTACAT......................................................... 23 2 3 0.67 2 0 2 0 0 0 0
................................................................TGAGTGTGTGTGTGTGAGTGTGTGA........................................................................................... 25 1 20 0.60 12 3 4 1 4 0 0
................................................................TGAGTGTGTGTGTGTGAG.................................................................................................. 18 0 20 0.55 11 7 0 0 4 0 0
....................................................................................................CACGCTCATGCACACACCCAAAAG........................................................ 24 2 2 0.50 1 0 0 1 0 0 0
....................................................................................................CACGCTCATGCACACACCCACACT........................................................ 24 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................CACTCTCATGCACACACCCACA.......................................................... 22 1 4 0.50 2 2 0 0 0 0 0
....................................................................................................CACGCTCATGCACACTCCC............................................................. 19 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................CACGCTAATGCACACACCCAC........................................................... 21 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................ACGCTCATGTACACACCCACA.......................................................... 21 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................CAAGCTCATGCACACACCCACA.......................................................... 22 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................CACGCTCATGCACGCACCC............................................................. 19 1 2 0.50 1 1 0 0 0 0 0
.......................................................................................................GCTCATGCACACACCCAC........................................................... 18 0 2 0.50 1 0 1 0 0 0 0
....................................................................................................CACGCCCATGCACACACCCACA.......................................................... 22 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................CACGCTCATGCACACCCCCACA.......................................................... 22 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCTCA.......................................................... 22 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................CATGCTCATGCACACACCCACA.......................................................... 22 1 6 0.50 3 3 0 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCAGT.......................................................... 22 2 5 0.40 2 1 0 1 0 0 0
....................................................................................................CACGTTCATGCACACACCCAC........................................................... 21 1 5 0.40 2 0 1 0 0 1 0
................................................................TGAGTGTGTGTGTGTGAGT................................................................................................. 19 0 20 0.35 7 0 7 0 0 0 0
......................................................GCCGGGCGCGTGAGTGTGTGTGTGTGAGTGT............................................................................................... 31 3 3 0.33 1 0 0 0 1 0 0
....................................................................................................CACGCTCATGCGCACACCCACT.......................................................... 22 2 3 0.33 1 1 0 0 0 0 0
....................................................................................................CACGCTCATGAACACACCCAT........................................................... 21 2 3 0.33 1 1 0 0 0 0 0
....................................................................................................CACGCTCATCCACACACCCAC........................................................... 21 1 3 0.33 1 0 1 0 0 0 0
...................................................................................................ACACGCTCATGCACACACCCACA.......................................................... 23 1 3 0.33 1 0 1 0 0 0 0
....................................................................................................CACGCTCATCCACACACCCACA.......................................................... 22 1 3 0.33 1 0 0 1 0 0 0
....................................................................................................CACGCTCATGCCCACACCCACAA......................................................... 23 2 3 0.33 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCAAAG......................................................... 23 2 3 0.33 1 0 0 1 0 0 0
....................................................................................................CACGCTCATGCACACATCCACT.......................................................... 22 2 3 0.33 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCACAGT........................................................ 24 2 3 0.33 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCAAT.......................................................... 22 2 6 0.33 2 1 0 1 0 0 0
....................................................................................................CACGCTCATGCACCCACCCACAT......................................................... 23 2 3 0.33 1 0 1 0 0 0 0
...............................................GCGTGGGTGCGGGCGTG.................................................................................................................... 17 0 3 0.33 1 1 0 0 0 0 0
....................................................................................................CACGCTCATGCACACACCTACT.......................................................... 22 2 3 0.33 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGCACACACCT............................................................. 19 1 7 0.29 2 0 0 2 0 0 0
....................................................................................................CACGCTCATGCTCACACCCA............................................................ 20 1 7 0.29 2 1 1 0 0 0 0
....................................................................................................CACGCTCATGCACGCACCCACAT......................................................... 23 2 7 0.29 2 0 2 0 0 0 0
....................................................................................................CACGCTCATGCTCACACCCACA.......................................................... 22 1 4 0.25 1 1 0 0 0 0 0
....................................................................................................CACGCTCATGCACACACCA............................................................. 19 1 4 0.25 1 1 0 0 0 0 0
....................................................................................................CACGCTCTTGCACACACCCACA.......................................................... 22 1 4 0.25 1 1 0 0 0 0 0
....................................................................................................CACGCTTATGCACACACCCA............................................................ 20 1 4 0.25 1 0 1 0 0 0 0
.....................................................................................................ACGCTCATGCACACACCCG............................................................ 19 1 4 0.25 1 0 0 1 0 0 0
....................................................................................................CACGCTCATGCACACACCCACGT......................................................... 23 2 4 0.25 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGCATATACCCACA.......................................................... 22 2 4 0.25 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCAAAA......................................................... 23 2 4 0.25 1 1 0 0 0 0 0
.....................................................................................................ACGCTCATGCACACACCCAA........................................................... 20 1 4 0.25 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCACAGA........................................................ 24 2 5 0.20 1 0 0 1 0 0 0
....................................................................................................CACGCTCATGCACACACCCATC.......................................................... 22 2 5 0.20 1 1 0 0 0 0 0
....................................................................................................CACGCTCATGCACACA................................................................ 16 0 11 0.18 2 1 1 0 0 0 0
....................................................................................................CACGCTCATGCATACACCCAA........................................................... 21 2 6 0.17 1 0 1 0 0 0 0
....................................................................................................CACGTTCATGCACACACCCACAT......................................................... 23 2 6 0.17 1 0 1 0 0 0 0
....................................................................................................CACGCTTATGCACACACCCACT.......................................................... 22 2 6 0.17 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCACATA........................................................ 24 2 12 0.17 2 0 1 1 0 0 0
....................................................................................................CACGCTCATGCACACACCCCCT.......................................................... 22 2 6 0.17 1 0 1 0 0 0 0
....................................................................................................CACGCTCATCCACACATCCAC........................................................... 21 2 13 0.15 2 0 2 0 0 0 0
................................................................TGAGTGTGTGTGTGTGAGTGTGTAT........................................................................................... 25 1 20 0.15 3 2 0 1 0 0 0
..................................................................AGTGTGTGTGTGTGAGTGTGT............................................................................................. 21 0 20 0.15 3 2 1 0 0 0 0
................................................................TGAGTGTGTGTGTGTGA................................................................................................... 17 0 20 0.15 3 0 0 0 3 0 0
....................................................................................................CACGCTCATGCACACACCCACGGT........................................................ 24 3 7 0.14 1 0 0 0 0 1 0
....................................................................................................CACCCTCATGCACACACCCACT.......................................................... 22 2 7 0.14 1 1 0 0 0 0 0
....................................................................................................CACGCTCATGGACACACCCA............................................................ 20 1 7 0.14 1 1 0 0 0 0 0
.....................................................................................................ACGCTCATGCACACACCA............................................................. 18 1 7 0.14 1 0 0 1 0 0 0
....................................................................................................CACGCTCATGCACACACCCATAT......................................................... 23 2 7 0.14 1 1 0 0 0 0 0
....................................................................................................CACACTCATGCACACACCCACA.......................................................... 22 1 15 0.13 2 2 0 0 0 0 0
....................................................................................................CACGCTCATGCACACAC............................................................... 17 0 8 0.13 1 0 1 0 0 0 0
....................................................................................................CACGCTCATGCACACACCCACACAT....................................................... 25 2 9 0.11 1 1 0 0 0 0 0
................................................................TGAGTGTGTGTGTGTGAGTGTT.............................................................................................. 22 1 20 0.10 2 0 0 0 2 0 0
.................................................................GAGTGTGTGTGTGTGAGTGTGT............................................................................................. 22 0 20 0.10 2 0 1 0 1 0 0
.................................................................GAGTGTGTGTGTGTGAGT................................................................................................. 18 0 20 0.10 2 0 0 0 2 0 0
....................................................................................................CACGCTCATGCACACACCAC............................................................ 20 2 20 0.10 2 0 2 0 0 0 0
....................................................................................................CATGCTCATGCACACACCCACAA......................................................... 23 2 11 0.09 1 0 1 0 0 0 0
.....................................................................................................ACGCTCATGCACACAC............................................................... 16 0 12 0.08 1 0 1 0 0 0 0
.....................................................................................................ACGCTCATGCACACACCT............................................................. 18 1 13 0.08 1 0 1 0 0 0 0
...............................................................GTGAGTGTGTGTGTGTGAGTGTGT............................................................................................. 24 0 15 0.07 1 0 0 0 1 0 0
....................................................................................................CACGCTCATGCACACACCCTT........................................................... 21 2 16 0.06 1 0 1 0 0 0 0
................................................................TGAGTGTGTGTGTGTGAGTGTTT............................................................................................. 23 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................CACTCTCATGCACACACCCAT........................................................... 21 2 20 0.05 1 0 1 0 0 0 0
................................................................TGAGTGTGTGTGTGTGAGTGTGG............................................................................................. 23 1 20 0.05 1 0 0 0 1 0 0
................................................................TGAGTGTGTGTGTGTGAGTGTGGG............................................................................................ 24 1 20 0.05 1 0 0 0 1 0 0
..................................................................AGTGTGTGTGTGTGAGT................................................................................................. 17 0 20 0.05 1 1 0 0 0 0 0
................................................................TGAGTGTGTGTGTGTGATTGTGTGT........................................................................................... 25 1 20 0.05 1 0 0 0 1 0 0
.................................................................GAGTGTGTGTGTGTGAGTGT............................................................................................... 20 0 20 0.05 1 0 0 0 1 0 0
..................................................................AGTGTGTGTGTGTGAGTGTG.............................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0
..................................................................AGTGTGTGTGTGTGAGTGT............................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................CACGCTCATGCATACACCCACAGA........................................................ 24 3 20 0.05 1 0 0 0 1 0 0
.................................................................GAGTGTGTGTGTGTGAGTGTGTGT........................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CTGGCCGGAACCCCCACTTCCAGGCCCTGCCGCGCCGGCTCCCGGGtgGgtgggtgGgggGgtgtgTgtgtgtgtgtgtgTgtgtgtgtGCGAGGCCCAGGTGCGAGTACGTGTGTGGGTGTGCGGGCGTGAGGCCGAGACGGGGGAGCCGGCCGCACTTGGGGACGCCTCGGACCGAAC

*******************************************..(((((((((((((((...(((((((((((((((((..((......))..))))))))))))))))).)))))))))))))))....************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:42 AM