ID:

ssc-mir-551a

 Coordinate:

chr6:59927697-59927776 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.4 -48.3 -48.3

Sense Strand Reads

CCACCCCGCTCTTGGCCCGCTGCTGTGACCGTCTCCCGGTGGGGACCGCCTGGTGACCCTGGAAATCCAGAGCGGGTGAGGCCTGTCTGACTGTTTCTAGGCGACCCACTCTTGGTTTCCATGGTTGCCCTGGAAACCACAGAGGGGGGCCGTTGATGGGGCCCAGGCTCTTCCCGAACC

***********************************...((((...(((...(((((((.((((((((.((((.((((...(((((............))))).)))).)))).)))))))).))))))).)))...)))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066809

ovary		 SRR066810

testes		 SRR1274763

ovary		 SRR139076

testes
....................................................................................................GCGACCCACTCTTGGTTTCCA........................................................... 21 0 1 18.00 18 9 7 2 0 0
....................................................................................................GCGACCCACTCTTGGTTTCC............................................................ 20 0 1 8.00 8 3 2 0 2 1
....................................................................................................GCGACCCACTCTTGGTTTC............................................................. 19 0 1 2.00 2 2 0 0 0 0
......................................................................................................GACCCACTCTTGGTTTCC............................................................ 18 0 1 1.00 1 0 1 0 0 0
....................................................................................................GCGACCCACTCTTGGTTTCCAT.......................................................... 22 0 1 1.00 1 1 0 0 0 0
....................................................................................................GCGACCCACTCTTGGTTTA............................................................. 19 1 1 1.00 1 0 1 0 0 0

Anti-sense strand reads

GGTGGGGCGAGAACCGGGCGACGACACTGGCAGAGGGCCACCCCTGGCGGACCACTGGGACCTTTAGGTCTCGCCCACTCCGGACAGACTGACAAAGATCCGCTGGGTGAGAACCAAAGGTACCAACGGGACCTTTGGTGTCTCCCCCCGGCAACTACCCCGGGTCCGAGAAGGGCTTGG

***********************************...((((...(((...(((((((.((((((((.((((.((((...(((((............))))).)))).)))).)))))))).))))))).)))...)))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:38 AM