ID:

ssc-mir-545

 Coordinate:

chrX:67530196-67530274 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-0.3 -0.3 -0.1
mature

star

  1. chr15:90897922-90897943 -
  2. ssc-mir-545  chrX:67530243-67530264 -
  3. JH118495-1:50547-50568 +
  4. GL895672-1:41043-41064 -

Sense Strand Reads

TggTTGtGGGgtGGttTtGTGTgTTgtTgTggtGtGgggtGggTGGgtgtTTtGTtGGggTgtGTtttTGTTTtTTGGtTGttTtttTGAATGtgTgtTgttgtttgtTTTtTTGTGTGggTGgTtACGTGATCTCCACAGGCTCTGGACTGTCAACTGTTTCTTCAAAATGCATGTGG

*********************************************......................................................................(((((....))))).....********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR1274764

testes		 SRR139076

testes		 SRR1274763

ovary
.................................................................................................ATCAACAAACATTTATTGTGTGA........................................................... 23 1 1 231.00 231 146 79 4 0 2 0
.................................................................................................ATCAACAAACATTTATTGTGTG............................................................ 22 0 1 26.00 26 12 5 7 0 2 0
.................................................................................................ATCAACAAACATTTATTGTGTGC........................................................... 23 0 1 25.00 25 1 4 12 3 4 1
............................................................TCAGTAAATGTTTATTGGATGA................................................................................................. 22 0 4 18.50 74 33 22 2 14 0 3
.................................................................................................ATCAACAAACATTTATTGTGT............................................................. 21 0 1 17.00 17 4 5 2 0 6 0
..................................................................................................TCAACAAACATTTATTGTGTGC........................................................... 22 0 1 6.00 6 2 0 0 2 0 2
..........................................................CCTCAGTAAATGTTTATTGGAT................................................................................................... 22 0 1 6.00 6 0 0 1 4 0 1
............................................................TCAGTAAATGTTTATTGGAT................................................................................................... 20 0 4 5.50 22 0 4 2 11 1 4
..................................................................................................TCAACAAACATTTATTGTGTGCC.......................................................... 23 0 1 4.00 4 1 0 0 2 0 1
..........................................................CCTCAGTAAATGTTTATTGGATG.................................................................................................. 23 0 1 4.00 4 2 0 0 1 0 1
..................................................................................................TCAACAAACATTTATTGTGTGCCT......................................................... 24 0 1 4.00 4 0 0 0 4 0 0
..................................................................................................TCAACAAACATTTATTGTGTGA........................................................... 22 1 4 3.75 15 10 5 0 0 0 0
...........................................................CTCAGTAAATGTTTATTGGATGA................................................................................................. 23 0 4 3.50 14 4 4 0 4 1 1
.................................................................................................ATCAACAAACATTTATTGTGTGG........................................................... 23 1 1 3.00 3 1 2 0 0 0 0
............................................................TCAGTAAATGTTTATTGGATG.................................................................................................. 21 0 4 2.75 11 2 0 2 3 1 3
...........................................................CTCAGTAAATGTTTATTGGA.................................................................................................... 20 0 5 2.40 12 5 7 0 0 0 0
............................................................TCAGTAAATGTTTATTGGA.................................................................................................... 19 0 5 2.40 12 3 6 0 3 0 0
...........................................................CTCAGTAAATGTTTATTGGAT................................................................................................... 21 0 4 2.25 9 1 0 0 6 1 1
.........................................CCTGGCACATTAGTAGGC........................................................................................................................ 18 0 1 2.00 2 0 0 2 0 0 0
..................................................................................................TCAACAAACATTTATTGTGTG............................................................ 21 0 1 2.00 2 1 1 0 0 0 0
.................................................................................................ATCAACAAACATTTATTGT............................................................... 19 0 1 2.00 2 0 0 1 0 1 0
..........................................................CCTCAGTAAATGTTTATTGGA.................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0
...........................................................CTCAGTAAATGTTTATTGGATG.................................................................................................. 22 0 4 2.00 8 3 1 0 3 0 1
.................................................................................................ATCAACAAACATTTATTGTGTGT........................................................... 23 1 2 1.50 3 2 0 0 1 0 0
..........................................................CCTCAGTAATTGTTTATTGGATGA................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................AACAAACATTTATTGTGTGC........................................................... 20 0 1 1.00 1 0 0 1 0 0 0
..........................................CTGGCACATTAGTAGGCC....................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1
.........................................................................................................................TGCTAACGTGATCTCCACAGGCTCTGGACTGTCAACTGTTTCTTCAAAATGCATGT.. 56 0 1 1.00 1 0 0 0 0 0 1
.....................................................................................AATGAATGACTCATCAACAAACATTTATTGTGTGCC.......................................................... 36 0 1 1.00 1 0 0 0 0 0 1
.................................................................................................ATCAACAAACATTTATCGTGTGA........................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................CCTGGCACATTAGTAGGCC....................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0
..............................................................AGTAAATGTTTATTGGATG.................................................................................................. 19 0 4 0.50 2 0 0 1 1 0 0
..............................................................AGTAAATGTTTATTGGATGA................................................................................................. 20 0 4 0.50 2 0 0 0 1 1 0
...........................................TGGCACATTAGTAGGC........................................................................................................................ 16 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................ATCAACAAGCATTTATTGTGTGC........................................................... 23 1 2 0.50 1 1 0 0 0 0 0
..................................................................................................TCAACAAACATTTATTGTGTGT........................................................... 22 1 17 0.41 7 3 3 0 1 0 0
...........................................................ATCAGTAAATGTTTATTGGATGA................................................................................................. 23 1 5 0.40 2 1 1 0 0 0 0
...................................................................................................CAACAAACATTTATTGTGT............................................................. 19 0 5 0.40 2 0 0 2 0 0 0
.................................................................................................ACCAACAAACATTTATTGTGT............................................................. 21 1 3 0.33 1 0 1 0 0 0 0
.................................................................................................ATCAACAAACGTTTATTGTGT............................................................. 21 1 3 0.33 1 0 0 0 0 1 0
.................................................................................................ATCAACAAACATTTATTGTGCGA........................................................... 23 2 4 0.25 1 1 0 0 0 0 0
.................................................................................................ATCAACAAGCATTTATTGTGTGA........................................................... 23 2 4 0.25 1 0 1 0 0 0 0
..............................................................................................ATTATCAACAAACATTTATTGTGTGA........................................................... 26 3 4 0.25 1 1 0 0 0 0 0
.................................................................................................ATCAACAAACATTCATTGTGTGA........................................................... 23 2 4 0.25 1 1 0 0 0 0 0
.................................................................................................ATCAACAAACATTTATTGTGA............................................................. 21 1 5 0.20 1 1 0 0 0 0 0
..................................................................................................TCAACAAACATTTATTGTGT............................................................. 20 0 5 0.20 1 0 0 1 0 0 0
.................................................................................................ATCAACAAAGATTTATTGTGTGA........................................................... 23 2 5 0.20 1 1 0 0 0 0 0
.................................................................................................ATTAACAAACATTTATTGTGT............................................................. 21 1 6 0.17 1 0 0 1 0 0 0
.............................................................CAGTAAATGTTTATTGGA.................................................................................................... 18 0 6 0.17 1 1 0 0 0 0 0
............................................................TCAGTACATGTTTATTGGATGA................................................................................................. 22 1 6 0.17 1 0 0 0 0 1 0
.................................................................................................ATCAACAAACATTTATTGTGTGTG.......................................................... 24 2 8 0.13 1 1 0 0 0 0 0
..........................................................CCTCAGTAAATGTTTGTTGGAT................................................................................................... 22 1 9 0.11 1 0 0 0 0 0 1
............................................................TCAGTAAATGTTTATTGGAA................................................................................................... 20 1 18 0.06 1 0 1 0 0 0 0
..........................................................CCTCAGTAAATGTTTGTTGGAA................................................................................................... 22 2 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

AggAACtCCCgtCCttAtCACAgAAgtAgAggtCtCgggtCggACCgtgtAAtCAtCCggAgtCAtttACAAAtAACCtACttAtttACTTACtgAgtAgttgtttgtAAAtAACACACggACgAtTGCACTAGAGGTGTCCGAGACCTGACAGTTGACAAAGAAGTTTTACGTACACC

*********************************************......................................................................(((((....))))).....********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes
...........................................CCCGTGTAATCATGCTGAGTC................................................................................................................... 21 3 9 0.11 1 1

Generated: 09/01/2015 at 11:45 AM