ID:

ssc-mir-504

 Coordinate:

chrX:129654206-129654285 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

TAGAATCCCACCCGAAGAGAGGAGACCTCACGTGGATTGTTGACTCGGCTGCTGTTGGGAGACCCTGGTCTGCACTCTATCTGTATGCTTACTGAAGGGAGCGCAGGGCAGGGTTTCCCACACAGAGGGCACAGGCAACCACCGCATGGCAAAGGTCGATCCGAAGTCGATTTCAAAGCC

********************************************...(((.((((((((((((((((.(((((.((((.((.(((....))).))..)))).))))).)))))))))))).))))..)))..************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066809

ovary		 SRR139076

testes		 SRR1274763

ovary		 SRR066810

testes		 SRR1274764

testes
...........................................................AGACCCTGGTCTGCACTCTAT.................................................................................................... 21 0 1 1259.00 1259 1133 82 35 4 5 0
...........................................................AGACCCTGGTCTGCACTCTATC................................................................................................... 22 0 1 850.00 850 653 119 58 15 5 0
...........................................................AGACCCTGGTCTGCACTCTATCT.................................................................................................. 23 0 1 216.00 216 160 40 8 6 1 1
............................................................GACCCTGGTCTGCACTCTATC................................................................................................... 21 0 1 182.00 182 47 101 4 21 9 0
...........................................................AGACCCTGGTCTGCACTCTATCA.................................................................................................. 23 1 1 93.00 93 64 23 6 0 0 0
............................................................GACCCTGGTCTGCACTCTAT.................................................................................................... 20 0 1 50.00 50 24 21 0 2 2 1
...........................................................AGACCCTGGTCTGCACTCTATT................................................................................................... 22 1 1 38.00 38 29 4 4 0 1 0
...........................................................AGACCCTGGTCTGCACTCTATA................................................................................................... 22 1 1 32.00 32 25 5 2 0 0 0
............................................................GACCCTGGTCTGCACTCTATCT.................................................................................................. 22 0 1 31.00 31 10 12 1 7 1 0
...........................................................AGACCCTGGTCTGCACTCTA..................................................................................................... 20 0 1 26.00 26 16 7 2 1 0 0
...........................................................AGACCCTGGTCTGCACTCTAA.................................................................................................... 21 1 1 23.00 23 20 3 0 0 0 0
............................................................GACCCTGGTCTGCACTCTATCA.................................................................................................. 22 1 1 11.00 11 9 2 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTATAA.................................................................................................. 23 2 1 10.00 10 10 0 0 0 0 0
...........................................................AGACCCTGGTCTGCGCTCTATC................................................................................................... 22 1 1 9.00 9 8 0 1 0 0 0
................................................................CTGGTCTGCACTCTATC................................................................................................... 17 0 1 9.00 9 9 0 0 0 0 0
............................................................GACCCTGGTCTGCACTCTATT................................................................................................... 21 1 1 8.00 8 3 4 0 0 1 0
...........................................................AGACCCTGGTCTGCATTCTAT.................................................................................................... 21 1 1 8.00 8 8 0 0 0 0 0
...........................................................AGACCCTGGTCTGCCCTCTATC................................................................................................... 22 1 1 8.00 8 7 0 1 0 0 0
...........................................................AGCCCCTGGTCTGCACTCTAT.................................................................................................... 21 1 1 8.00 8 8 0 0 0 0 0
................................................................CTGGTCTGCACTCTAT.................................................................................................... 16 0 1 8.00 8 8 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTATCG.................................................................................................. 23 1 1 7.00 7 1 5 0 1 0 0
...........................................................AGACCCTGGTCTGCACTCT...................................................................................................... 19 0 1 7.00 7 3 3 0 1 0 0
............................................................GACCCTGGTCTGCACTCTAA.................................................................................................... 20 1 1 5.00 5 3 2 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTATAT.................................................................................................. 23 1 1 5.00 5 5 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTCT.................................................................................................... 21 1 1 5.00 5 5 0 0 0 0 0
............................................................GACCCTGGTCTGCACTCTATCTGT................................................................................................ 24 0 1 5.00 5 0 5 0 0 0 0
...........................................................AGACCCTGGTCTGCATTCTATC................................................................................................... 22 1 1 5.00 5 3 0 2 0 0 0
................................................................CTGGTCTGCACTCTATCT.................................................................................................. 18 0 1 4.00 4 3 0 1 0 0 0
...........................................................AGACCCTGGTTTGCACTCTAT.................................................................................................... 21 1 1 4.00 4 4 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTCTC................................................................................................... 22 1 1 3.00 3 2 0 1 0 0 0
...........................................................AGACCCTGGTCTGCACTTTAT.................................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0
............................................................GACCCTGGTCTGCACTTTAT.................................................................................................... 20 1 1 3.00 3 3 0 0 0 0 0
...............................................................................................AGGGAGCGCAGGGCAGGGTTTC............................................................... 22 0 1 3.00 3 2 1 0 0 0 0
...........................................................AGACTCTGGTCTGCACTCTAT.................................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTATG................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTTTATCT.................................................................................................. 23 1 1 3.00 3 3 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTAT...................................................................................................... 19 1 4 2.50 10 10 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTATCTC................................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
...........................................................AGACCCTGGTCTTCACTCTAT.................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................GACCCTGGTCTGCACTCTATCTG................................................................................................. 23 0 1 2.00 2 1 1 0 0 0 0
............................................................GACCCTGGTCTGCACTCTATAA.................................................................................................. 22 2 1 2.00 2 2 0 0 0 0 0
...........................................................AGGCCCTGGTCTGCACTCTAT.................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTATCTA................................................................................................. 24 1 1 2.00 2 1 1 0 0 0 0
...........................................................AGACCCTGGTCTGCACTGTATC................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
............................................................GACCCTGGTCTGCACTCTATA................................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0
...........................................................AGACCCTGGTCTGTACTCTAT.................................................................................................... 21 1 1 2.00 2 1 0 0 0 1 0
...........................................................AGACCCTGGTCTGCACTTTATC................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTC....................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0
................................................................................................GGGAGCGCAGGGCAGGGTTTCC.............................................................. 22 0 1 2.00 2 1 1 0 0 0 0
............................................................GACCCTGGTCTGCACTCTATCAAT................................................................................................ 24 2 1 2.00 2 2 0 0 0 0 0
............................................TCGGCTGCTGTTGGGA........................................................................................................................ 16 0 1 2.00 2 0 0 0 2 0 0
...........................................................AGACTCTGGTCTGCACTCTATC................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
............................................................GACCCTGGTCTGCACTTTATCT.................................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................AGACCCTGGTCTGCATTCTATCT.................................................................................................. 23 1 1 2.00 2 2 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTAAA................................................................................................... 22 2 2 1.50 3 3 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTGTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCGCTCTATCT.................................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0
................................................................................................GGGAGCGCAGGGCAGGGTTTCCAAAAA......................................................... 27 3 1 1.00 1 0 1 0 0 0 0
...........................................................AGACCCTGGTCTGCACT........................................................................................................ 17 0 2 1.00 2 1 0 1 0 0 0
...........................................................AGACCCAGGTCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................GACCCTGGTCTGCACTCTCTC................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTAGTCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTTTGCACTCTATCA.................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTAC.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTATGT.................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
...........................................................GGACCCTGGTCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................GACCCTGGTCTGCACTCTATCTA................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
...........................................................AGATCCTGGTCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................GAAGGGAGCGCAGGGCAGGGTTTC............................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACACTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCATTCTATT................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCGCTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGGCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTACACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTTT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................ACACCCTGGTCTGCACTCTATC................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCAATCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTATCAA................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGTTCTGCACTCTATC................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CGCAGGGCAGGGTTTCCCACAC......................................................... 22 0 1 1.00 1 0 0 0 1 0 0
....................................TTGTTGACTCGGCTGCTGTTGGG......................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0
............................................................GACCCTGGTCTGCACTCTTTCT.................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGATCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGTTCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTATCTT................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCTCTCTATC................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
...........................................................GGACCCTGGTCTGCACTCTATCT.................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTTGTCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGGCCCTGGTCTGTACTCTAT.................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................GACCCTGGTCTGCACTCTATCTGTA............................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0
............................................................GACCCTGGTCTGCACTCTATCTAA................................................................................................ 24 2 1 1.00 1 0 0 0 1 0 0
...........................................................AGACCCTGGTCTGCACTCTATAG.................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCAGGTCTGCACTCTATC................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCCGGTCTGCACTCTATC................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................GACCCTGGTCTGCACTCTATCG.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
............................................................TACCCTGGTCTGCACTCTATC................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................AGACCCTGGTTTGCACTCTATC................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
...........................................................AGACCCTGGTCTGCCCTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACTCTGGTCTGCACTCTATCT.................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTATCGGAC............................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0
............................................................GACCTTGGTCTGCACTCTAT.................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................GACTCTGGTCTGCACTCTATC................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
...........................................................AGACCCTGGTCTGCACACTATCT.................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................AGGGTGCGCAGGGCAGGGTTTCT.............................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTTTATCA.................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGATCTGCACTCTATC................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
............................................................GACCCTGGTCTGCACTCTCTCT.................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACACTATC................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCTTGGTCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................GACCCTGGTCTGCACTCTATCTT................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
...........................................................ATACCCTGGTCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................GACCCTGGGCTGCACTCTATCT.................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
..............................................................................................AAGGGAGCGCAGGGCAGGGTTT................................................................ 22 0 1 1.00 1 0 0 1 0 0 0
...........................................................AGACCCTGGTGTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................GACCCTGGTCTGCGCTCTATCT.................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................TGACCCTGGTCTGCACTCTATC................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................AAGGGAGCGCAGGGCAGGGTTTC............................................................... 23 0 1 1.00 1 0 1 0 0 0 0
...........................................................AGGCCCTGGTCTGCACTCTATCT.................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTTCACTCTATCT.................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................GGACCCTGGTCTGCACTCTATC................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCAGTCTATC................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................GACCCTGGTCCGCACTCTATC................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................AGACCCTGGCCTGCACTCTATT................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGCCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTAG.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTATCTG................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTATCAT................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCATCCTATC................................................................................................... 22 2 2 1.00 2 2 0 0 0 0 0
...........................................................AGACCCTGGTCTGTACACTATC................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCTGGTTTGCACTCTATT................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................CGACCCTGGTCTGCACTCTAA.................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................AGGGAGCGCAGGGCAGGGTTTCT.............................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................AGACCCCGGTCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................GACCCTGGTCTGCACTCTA..................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
...........................................................AGACCTTGGTCTGCACTCTATC................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................AGGGAGCGCAGGGCAGGGTTAA............................................................... 22 2 3 0.67 2 0 1 1 0 0 0
...........................................................AGACCCTGGTCTGCACTCTGTC................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTAAT................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTAGA................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTATA..................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0
............................................................GACCCTGGTCTGTACTCTAT.................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0
................................................................CTGGTCTGCACTCTATAT.................................................................................................. 18 1 2 0.50 1 1 0 0 0 0 0
...........................................................AGACCCTGGACTGCACTCTAT.................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
...........................................................TGACCCTGGTCTGCACTCTAT.................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTGT.................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
............................................................GACCCTGGTCTGCACTCTGT.................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCAC......................................................................................................... 16 0 4 0.50 2 2 0 0 0 0 0
...........................................................AGACCTTGGTCTGCACTTTATCA.................................................................................................. 23 3 3 0.33 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTAAG................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0
...........................................................AGATCCTGGTCTGCACTCTATT................................................................................................... 22 2 4 0.25 1 1 0 0 0 0 0
............................................................GACCCTGGTCTGCACT........................................................................................................ 16 0 4 0.25 1 0 1 0 0 0 0
...........................................................AGACCCTGGTCTGCACCTTAT.................................................................................................... 21 2 5 0.20 1 1 0 0 0 0 0
...........................................................AGCCCCTGGTCTGCACTCTATAA.................................................................................................. 23 3 5 0.20 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTTAAT.................................................................................................. 23 3 5 0.20 1 1 0 0 0 0 0
...........................................................AGATCCTGGGCTGCACTCTATCA.................................................................................................. 23 3 5 0.20 1 1 0 0 0 0 0
...........................................................AGCCCCTGGTCTCCACTCTAT.................................................................................................... 21 2 5 0.20 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTTA.................................................................................................... 21 2 6 0.17 1 1 0 0 0 0 0
...........................................................AGACCCTGGTCTGCACTCTCC.................................................................................................... 21 2 7 0.14 1 1 0 0 0 0 0
...........................................................AGCCCCTGGTCTGCCCTCTAT.................................................................................................... 21 2 11 0.09 1 1 0 0 0 0 0
..........................................................................................................................AATAGGGCTCAGGCAACCACC..................................... 21 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

ATCTTAGGGTGGGCTTCTCTCCTCTGGAGTGCACCTAACAACTGAGCCGACGACAACCCTCTGGGACCAGACGTGAGATAGACATACGAATGACTTCCCTCGCGTCCCGTCCCAAAGGGTGTGTCTCCCGTGTCCGTTGGTGGCGTACCGTTTCCAGCTAGGCTTCAGCTAAAGTTTCGG

************************************************...(((.((((((((((((((((.(((((.((((.((.(((....))).))..)))).))))).)))))))))))).))))..)))..******************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:44 AM