ID:

ssc-mir-493

 Coordinate:

chr7:132069400-132069482 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.0 -23.9 -23.8
mature

star

  1. chr2:125222045-125222066 -
  2. ssc-mir-493  chr7:132069410-132069431 -

Sense Strand Reads

CCAGCCGTCATCAGCCTCACCTCCATCCTCGCCTGGGGGCTCACTCTGGCCCCCAGGGCCTTGTACATGGTAGGCTTTgtTTgtTTgGTTTGgtgtTGgGGTGttGGTgTtgTGTGTGggtGGgggTGTGggtGGgATCAAGTAAAGGACGCGGCCTTGGGAGTGCGCGCCTCGGGGAGGCGC

*********************************************((.((((((((.((((((.((((..(((((.......))))).....)))))))))).))))..........)))).))..............********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR1274763

ovary		 SRR139075

testes		 SRR066809

ovary		 SRR066810

testes
............................................................TTGTACATGGTAGGCTTTCATT..................................................................................................... 22 0 1 12.00 12 7 4 1 0
.....................................................................................................TGAAGGTCTACTGTGTGCCAGG............................................................ 22 0 2 4.00 8 2 1 5 0
............................................................TTGTACATGGTAGGCTT.......................................................................................................... 17 0 1 2.00 2 0 2 0 0
............................................................TTGTACATGGTAGGCTTTCAT...................................................................................................... 21 0 1 2.00 2 1 0 0 1
............................................................TTGTACATGGTAGGCTTTCA....................................................................................................... 20 0 1 1.00 1 1 0 0 0
............................................................TTGTACATGGTAGGCTTTCATTT.................................................................................................... 23 1 1 1.00 1 0 1 0 0
.....................................................................................................TGAAGGTCTACTGTGTGCCAGGA........................................................... 23 1 3 1.00 3 0 0 2 1
...................................................CCCAGGACCTTGTACATGTTAG.............................................................................................................. 22 2 2 0.50 1 0 0 0 1
.....................................................................................................TGAAGGTCTACTGTGTGCCAG............................................................. 21 0 4 0.50 2 0 0 2 0
.....................................................................................................TGAAGGTCTACTGTGTGCCAGA............................................................ 22 1 7 0.29 2 0 2 0 0
.....................................................................................................TGAAGGTCTACTGTGTGCCAGT............................................................ 22 1 4 0.25 1 0 0 0 1
.....................................................................................................TGAAGGTCTACTGTGTGCCAGGT........................................................... 23 1 4 0.25 1 0 0 1 0
.....................................................................................................TGAAGGTCTACTGTGTGCC............................................................... 19 0 4 0.25 1 0 0 1 0

Anti-sense strand reads

GGTCGGCAGTAGTCGGAGTGGAGGTAGGAGCGGACCCCCGAGTGAGACCGGGGGTCCCGGAACATGTACCATCCGAAAgtAAgtAAgCAAACgtgtACgCCACttCCAgAtgACACACggtCCgggACACggtCCgTAGTTCATTTCCTGCGCCGGAACCCTCACGCGCGGAGCCCCTCCGCG

*********************************************((.((((((((.((((((.((((..(((((.......))))).....)))))))))).))))..........)))).))..............********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes
......................................................................................................................................................CGGCGGAACCCTCAGGCGC.............. 19 2 8 0.13 1 1

Generated: 09/01/2015 at 11:41 AM