ID:

ssc-mir-4334

 Coordinate:

chr15:134433005-134433073 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-47.4 -47.3 -47.2
mature

  1. ssc-mir-339-2  chr1:181756340-181756359 -
  2. chr11:6878885-6878904 -
  3. ssc-mir-4334  chr15:134433045-134433064 +
  4. ssc-mir-339-1  chr3:726720-726739 +
  5. chr6:71935907-71935926 +
  6. JH118910-1:105400-105419 +
star

Sense Strand Reads

CCGAGTCTAAGCTGGCACCCTCACTtaagcacgtgcggtggggacccgccctgtgctgagccctggagtgacgggggtgaaagggcagagtccctgtcctccaggagctcCCCATGTGGCGCCCAGAGAGACCTGGGAGGCGTGGTCATGCTAGGAGCAGACACACCGA

***********************************...((((....((((.((((..(((((((((((.((((((((((......))...))))))))))))))).))))..)))).)))))))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1274763

ovary		 SRR139075

testes		 SRR066809

ovary		 SRR1274764

testes		 SRR066810

testes		 SRR139076

testes
..........................................................................................TCCCTGTCCTCCAGGAGCTC........................................................... 20 0 6 94.00 564 260 134 74 65 30 1
..........................................................................................TCCCTGTCCTCCAGGAGCT............................................................ 19 0 11 12.64 139 10 97 21 1 5 5
..........................................................................................TCCCTGTCCTCCAGGAGCTCACC........................................................ 23 1 4 4.75 19 4 7 1 0 7 0
..........................................................................................TCCCTGTCCTCCAGGAGC............................................................. 18 0 14 3.36 47 1 36 6 0 3 1
..........................................................................................TCCCTGTCCTCCAGGAG.............................................................. 17 0 17 2.76 47 0 46 0 0 0 1
..........................................................................................TCCCTGTCCTCCAGGAGCTCACCA....................................................... 24 1 1 2.00 2 0 0 1 0 0 1
..........................................................................................TCCCTGTCCTCCAGGAGCTCC.......................................................... 21 0 1 2.00 2 0 1 0 0 1 0
............................................................................................CCTGTCCTCCAGGAGCTC........................................................... 18 0 7 1.29 9 2 6 1 0 0 0
..........................................................................................TCCCTGTCCTCCAGGAGCTCCC......................................................... 22 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................TCCCTGTCCTCCAGGAGCTA........................................................... 20 1 16 0.69 11 1 6 2 0 2 0
..........................................................................................TCCCTGTCCTCCAGGAGCTCG.......................................................... 21 1 6 0.67 4 1 1 1 0 1 0
..........................................................................................TCTCTGTCCTCCAGGAGCTC........................................................... 20 1 19 0.47 9 0 9 0 0 0 0
..........................................................................................TCCCTGTCCTCCAGGAGA............................................................. 18 1 20 0.30 6 0 0 1 0 5 0
..........................................................................................TCCCTGTCCTCCAGGA............................................................... 16 0 20 0.30 6 0 6 0 0 0 0
..........................................................................................TCCCTGTCCTCCAGG................................................................ 15 0 20 0.25 5 0 5 0 0 0 0
............................................................................................CCTGTCCTCCAGGAGCTCACTAT...................................................... 23 2 11 0.18 2 0 0 0 0 0 2
..........................................................................................TCCCTGTCCTCCAGGAGCTCACCAGT..................................................... 26 3 6 0.17 1 0 1 0 0 0 0
..........................................................................................TCCCTGTCCACCAGGAGCTC........................................................... 20 1 7 0.14 1 1 0 0 0 0 0
..........................................................................................TCCCTGTCCTCCAGGAGCTCGA......................................................... 22 2 7 0.14 1 0 0 1 0 0 0
..........................................................................................TCCCTGTACTCCAGGAGCTC........................................................... 20 1 7 0.14 1 0 1 0 0 0 0
..........................................................................................TCCCTCTCCTCCAGGAGCTC........................................................... 20 1 8 0.13 1 1 0 0 0 0 0
.........................................................................................CTCCCTGTCCTCCAGGAGCTC........................................................... 21 1 8 0.13 1 0 0 0 0 1 0
............................................................................................CCTGTCCTCCAGGAGCT............................................................ 17 0 16 0.13 2 0 2 0 0 0 0
..........................................................................................TCCCAGTCCTCCAGGAGCTC........................................................... 20 1 8 0.13 1 0 0 1 0 0 0
..........................................................................................TTCCTGTCCTCCAGGAGCTC........................................................... 20 1 16 0.13 2 0 2 0 0 0 0
............................................................................................CCTGTCCTCCAGGAGCTCATCA....................................................... 22 2 20 0.10 2 0 0 0 0 0 2
..........................................................................................TCTCTGTCCTCCAGGAGCT............................................................ 19 1 20 0.10 2 0 2 0 0 0 0
.............................................................................................CTGTCCTCCAGGAGCTC........................................................... 17 0 10 0.10 1 1 0 0 0 0 0
..........................................................................................TCCCTGTCCTCCAGGAGTTC........................................................... 20 1 10 0.10 1 0 0 1 0 0 0
..........................................................................................TCCCTGTCCTCCGGGAGCTC........................................................... 20 1 12 0.08 1 0 1 0 0 0 0
..........................................................................................TCCCTGTCCTCCACGAGCT............................................................ 19 1 15 0.07 1 0 1 0 0 0 0
.............................................................................................CTGTCCTCCAGGAGCT............................................................ 16 0 20 0.05 1 0 1 0 0 0 0
..........................................................................................TCCCCGTCCTCCAGGAG.............................................................. 17 1 20 0.05 1 0 1 0 0 0 0
..........................................................................................TCCCTGTCCTCCAGGAGCA............................................................ 19 1 20 0.05 1 0 0 1 0 0 0
............................................................................................CCTGTCCTCCAGGAGC............................................................. 16 0 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

GGCTCAGATTCGACCGTGGGAGTGAtTTgGTGgtgGggtggggTGGGgGGGtgtgGtgTgGGGtggTgtgTGgggggtgTTTgggGTgTgtGGGtgtGGtGGTggTgGtGGGGTACACCGCGGGTCTCTCTGGACCCTCCGCACCAGTACGATCCTCGTCTGTGTGGCT

***********************************...((((....((((.((((..(((((((((((.((((((((((......))...))))))))))))))).))))..)))).)))))))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:28 AM