ID:

ssc-mir-4331

 Coordinate:

chr6:60130099-60130178 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature

  1. chr14:144183490-144183511 +
  2. ssc-mir-4331  chr6:60130147-60130168 -
star

Sense Strand Reads

tgGgtGGTTggtTgggTGGggTGGgTTtGTGGGTgtGGGtTggtGgtTTGggtTGtGgTtTGGgGTtGtTgtgtGtgtgtGgTgtGtTgTGGgtTTGgTGTGGgTGTGGTGTtGGggtGgtGgTTTGgTggttTTgttggTgTGGggTGGGTGtGGgggTtttttgtttttttGttGCCC

***********************************..............................................................................................................*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR1274763

ovary		 SRR1274764

testes		 SRR139076

testes		 SRR066809

ovary		 SRR066810

testes
............................................................TGGCGTAGATCACAGACACAGC.................................................................................................. 22 0 2 116.50 233 145 29 26 12 16 5
............................................................TGGCGTAGATCACAGACACAG................................................................................................... 21 0 2 65.00 130 83 15 20 4 5 3
............................................................TGGCGTAGATCACAGACACAGCA................................................................................................. 23 1 5 11.00 55 51 0 0 3 1 0
............................................................TGGCGTAGATCACAGACACA.................................................................................................... 20 0 2 10.00 20 12 3 0 3 0 2
............................................................TGGCGTAGATCACAGACACAGA.................................................................................................. 22 1 14 1.57 22 18 0 1 3 0 0
............................................................TGGCGTAGATCACCGACACAGC.................................................................................................. 22 1 2 1.00 2 1 0 0 1 0 0
.............................................................GGCGTAGATCACAGACACAGC.................................................................................................. 21 0 3 0.67 2 2 0 0 0 0 0
.............................................................GGCGTAGATCACAGACACAG................................................................................................... 20 0 3 0.67 2 2 0 0 0 0 0
............................................................TGGCGTAGATCACCGACACAG................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
............................................................TGGCGTAGATCACACACACAG................................................................................................... 21 1 4 0.50 2 1 0 0 0 1 0
............................................................TGGCGTAGATCACAGACACAGCT................................................................................................. 23 0 2 0.50 1 1 0 0 0 0 0
............................................................TGGCGTAGATCACAGACAC..................................................................................................... 19 0 8 0.38 3 3 0 0 0 0 0
............................................................TGGCGTAGATCACAGACACAGCG................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
............................................................TGGCGTAGATCACAGACACAGAA................................................................................................. 23 2 20 0.20 4 4 0 0 0 0 0
..............................................................GCGTAGATCACCGACACAGC.................................................................................................. 20 1 6 0.17 1 1 0 0 0 0 0
.............................................................GGCGTAGATCACGGACACAGC.................................................................................................. 21 1 6 0.17 1 1 0 0 0 0 0
............................................................TGGCGTAGATCACAGACACAA................................................................................................... 21 1 19 0.16 3 2 1 0 0 0 0
.............................................................GGCGTAGATCACAGACACAGCA................................................................................................. 22 1 7 0.14 1 0 0 0 1 0 0
...............................................................CGTAGATCACAGACACAG................................................................................................... 18 0 8 0.13 1 0 0 1 0 0 0
............................................................TGGCGTAGATCACAGACACAGCC................................................................................................. 23 1 9 0.11 1 1 0 0 0 0 0
............................................................TGGCGTAGATCACAGACACAT................................................................................................... 21 1 14 0.07 1 1 0 0 0 0 0
............................................................TGGCGTAGATCACAGGCACAG................................................................................................... 21 1 15 0.07 1 1 0 0 0 0 0
............................................................TGGCGTAGATCACAGACACAGCAG................................................................................................ 24 2 20 0.05 1 1 0 0 0 0 0
............................................................TGGCGTAGATCACAAACACAGC.................................................................................................. 22 1 20 0.05 1 1 0 0 0 0 0
............................................................TGGCGTAGATCACAGACACAGT.................................................................................................. 22 1 20 0.05 1 0 1 0 0 0 0
............................................................TGGCGTAGATCACAGACACCGCA................................................................................................. 23 2 20 0.05 1 1 0 0 0 0 0
.............................................................GGCGTAGATCACAGACACAGT.................................................................................................. 21 1 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

tgCgtCCAAggtAgggACCggACCgAAtCACCCAgtCCCtAggtCgtAACggtACtCgAtACCgCAtCtAgtgtCtgtgtCgAgtCtAgACCgtAACgACACCgACACCACAtCCggtCgtCgAAACgAggttAAgttggAgACCggACCCACtCCgggAtttttgtttttttCttCGGG

***********************************..............................................................................................................*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:39 AM