ID:

ssc-mir-378b

 Coordinate:

chr1:284932187-284932263 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-21.4 -21.4 -21.3 -21.3
mature

  1. chr1:127066525-127066544 +
  2. ssc-mir-378b  chr1:284932198-284932217 -
  3. chr12:34821688-34821707 -
  4. ssc-mir-378-2  chr12:38396743-38396762 +
  5. ssc-mir-378-1  chr2:157640401-157640420 +
  6. chrX:130011428-130011447 +
star

Sense Strand Reads

GTCAACGCCTCTGGAATCTCCAGCCCAGTGCCCTTGGCTTGGTGCCACCCTTGAGCTACATTTGCTTGCGTTCTCTAAGTGTCTGGCTGttttgGgtgTGGtgTTGGtGTgtGttGTTGtGGTTggTGTgggtgTttGGtGgttGGttgtgTTGGTTttGTggggTGGGTggggTTG

***********************************..((........(((...(((((((...((..(((....((((.......(((......)))......)))))))..))...))))))).....)))........))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes		 SRR066809

ovary		 SRR139075

testes		 SRR1274763

ovary		 SRR1274764

testes		 SRR139076

testes
................................................................................................ACTGGACTTGGAGTCAGAAG............................................................. 20 0 6 5789.00 34734 18064 16519 115 27 8 1
................................................................................................ACTGGACTTGGAGTCAGAAGGT........................................................... 22 1 7 2177.29 15241 8193 7009 21 12 1 5
................................................................................................ACTGGACTTGGAGTCAGAAGT............................................................ 21 0 2 1085.00 2170 1159 1008 2 0 1 0
................................................................................................ACTGGACTTGGAGTCAGA............................................................... 18 0 8 284.50 2276 1157 1102 8 9 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGTA.......................................................... 23 2 9 140.11 1261 711 541 5 2 0 2
.................................................................................................CTGGACTTGGAGTCAGAAG............................................................. 19 0 6 93.67 562 268 292 0 1 1 0
................................................................................................ACTGGACTTGGAGTCAGAAGGCGA......................................................... 24 2 3 87.00 261 134 126 0 1 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGTG.......................................................... 23 1 1 65.00 65 30 35 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAA.............................................................. 19 0 7 65.00 455 231 217 5 2 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGGT........................................................... 21 1 7 56.86 398 200 197 1 0 0 0
................................................................................................ACTGGACTTGGAGTCGGAAG............................................................. 20 1 6 53.50 321 162 155 1 2 0 1
................................................................................................ACTGGACTTGGAGTCAGAAGGTAA......................................................... 24 2 1 35.00 35 20 14 1 0 0 0
................................................................................................ACTGGACTTGGAGTCAG................................................................ 17 0 10 31.20 312 137 174 0 1 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGT............................................................ 20 0 2 19.00 38 17 21 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGTT.......................................................... 23 2 14 17.86 250 137 112 1 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGTA........................................................... 22 1 2 17.50 35 13 21 1 0 0 0
................................................................................................ACTGGACTTGGAGTCGGAAGGT........................................................... 22 2 8 15.75 126 62 62 0 1 1 0
................................................................................................ACTGGACTTGGAGTCAGAAGTT........................................................... 22 0 1 15.00 15 5 9 1 0 0 0
...............................................................................................CACTGGACTTGGAGTCAGAAGT............................................................ 22 0 1 12.00 12 5 7 0 0 0 0
...............................................................................................CACTGGACTTGGAGTCAGAAG............................................................. 21 0 5 11.60 58 23 34 0 1 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGAG.......................................................... 23 2 5 11.00 55 22 28 1 3 1 0
................................................................................................ACTGGACTTGGAGTCGGAAGT............................................................ 21 1 2 9.00 18 10 8 0 0 0 0
................................................................................................ACTGGACTTGGGGTCAGAAG............................................................. 20 1 6 7.67 46 20 26 0 0 0 0
................................................................................................GCTGGACTTGGAGTCAGAAG............................................................. 20 1 7 7.00 49 23 24 2 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGC............................................................ 21 1 6 6.67 40 23 16 0 1 0 0
...............................................................................................CACTGGACTTGGAGTCAGAAGGT........................................................... 23 1 7 5.86 41 24 17 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGGCGA......................................................... 23 2 3 5.67 17 7 8 0 2 0 0
................................................................................................ACTGGACTTGGAGTCAGT............................................................... 18 1 14 5.43 76 32 43 0 1 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGAGA......................................................... 24 2 2 5.00 10 4 5 0 1 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGATG.......................................................... 23 1 1 5.00 5 2 3 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGTTA......................................................... 24 2 2 4.50 9 4 5 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAT............................................................. 20 1 12 4.25 51 21 30 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGTAG.......................................................... 23 1 1 4.00 4 2 2 0 0 0 0
..............................................................................................GCACTGGACTTGGAGTCAGAAGT............................................................ 23 0 1 4.00 4 2 2 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGGTA.......................................................... 22 2 12 3.75 45 23 22 0 0 0 0
................................................................................................ACCGGACTTGGAGTCAGAAG............................................................. 20 1 6 3.00 18 9 9 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGTAG............................................................. 20 1 8 2.88 23 13 10 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGAT........................................................... 22 1 5 2.40 12 6 6 0 0 0 0
................................................................................................ACTGGACTTGGAGCCAGAAG............................................................. 20 1 14 2.36 33 18 15 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAGA............................................................... 17 0 13 2.31 30 15 15 0 0 0 0
..............................................................................................GCACTGGACTTGGAGTCAGAAG............................................................. 22 0 5 2.20 11 6 5 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAC............................................................. 20 1 8 2.13 17 8 9 0 0 0 0
................................................................................................ACTGGACTTGGGGTCAGAAGGT........................................................... 22 2 9 2.00 18 10 8 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGTGA......................................................... 24 1 1 2.00 2 1 1 0 0 0 0
................................................................................................ACCGGACTTGGAGTCAGAAGGT........................................................... 22 2 8 1.63 13 8 5 0 0 0 0
................................................................................................ACTGGACTTGGAGTCA................................................................. 16 0 16 1.63 26 10 16 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAGAA.............................................................. 18 0 10 1.60 16 8 8 0 0 0 0
................................................................................................ACTGGGCTTGGAGTCAGAAG............................................................. 20 1 19 1.58 30 8 18 4 0 0 0
................................................................................................ACTGGACTTGGAGCCAGAAGGT........................................................... 22 2 9 1.56 14 10 4 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGTA........................................................... 21 1 2 1.50 3 2 1 0 0 0 0
................................................................................................ACTGGACTTGGGGTCAGAAGT............................................................ 21 1 2 1.50 3 1 2 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGGTAA......................................................... 23 2 2 1.50 3 1 2 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAAT............................................................ 21 1 4 1.50 6 2 4 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGCGAT........................................................ 25 3 3 1.33 4 3 1 0 0 0 0
................................................................................................GCTGGACTTGGAGTCAGAAGGT........................................................... 22 2 11 1.27 14 8 6 0 0 0 0
................................................................................................ACTGGACTTGGAGTCCGAAG............................................................. 20 1 9 1.22 11 6 5 0 0 0 0
................................................................................................ACTGGACTTGGCGTCAGAAG............................................................. 20 1 6 1.17 7 3 3 1 0 0 0
................................................................................................ACTGGACTTGGAGGCAGAAG............................................................. 20 1 11 1.09 12 6 6 0 0 0 0
..................................................................................................TGGACTTGGAGTCAGAAG............................................................. 18 0 15 1.07 16 8 8 0 0 0 0
................................................................................................ACTGGACTCGGAGTCAGAAGT............................................................ 21 1 2 1.00 2 0 2 0 0 0 0
................................................................................................ACTGGACTTGGAGTCGGAAGTT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGTCG.......................................................... 23 1 2 1.00 2 1 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGTAAGT....................................................... 26 3 1 1.00 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGTTT.......................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCTGAAG............................................................. 20 1 7 1.00 7 4 3 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGTAAG........................................................ 25 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGGTG.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0
................................................................................................GCTGGACTTGGAGTCAGAAGT............................................................ 21 1 2 1.00 2 2 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGCT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................ACTGTACTTGGAGTCAGAAGT............................................................ 21 1 2 1.00 2 0 2 0 0 0 0
..................................................................................................TGGACTTGGAGTCAGAAGT............................................................ 19 0 3 1.00 3 1 2 0 0 0 0
................................................................................................ACCGGACTTGGAGTCAGAAGGTG.......................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGGTAAG........................................................ 24 2 1 1.00 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGGTAG........................................................ 25 3 3 1.00 3 0 3 0 0 0 0
................................................................................................ACTGGACTCGGAGTCAGAAG............................................................. 20 1 13 0.92 12 7 5 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGGTT.......................................................... 22 2 16 0.88 14 4 9 0 0 0 1
................................................................................................ACTGGACTTGGAGTCAGAAGAAG.......................................................... 23 2 6 0.83 5 3 2 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAGGT............................................................ 21 1 4 0.75 3 1 2 0 0 0 0
................................................................................................ACTGGACTTGGACTCAGAAG............................................................. 20 1 11 0.73 8 3 5 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGCGAA........................................................ 25 3 7 0.71 5 3 2 0 0 0 0
................................................................................................ACTGGACTTGGCGTCAGAAGGT........................................................... 22 2 7 0.71 5 5 0 0 0 0 0
................................................................................................TCTGGACTTGGAGTCAGAAG............................................................. 20 1 13 0.69 9 6 3 0 0 0 0
................................................................................................ACTGGACTTGGAGTCGGAAGGTA.......................................................... 23 3 13 0.69 9 8 1 0 0 0 0
................................................................................................ACTAGACTTGGAGTCAGAAG............................................................. 20 1 16 0.69 11 2 9 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGCGAG........................................................ 25 2 3 0.67 2 2 0 0 0 0 0
................................................................................................ACTCGACTTGGAGTCAGAAG............................................................. 20 1 6 0.67 4 1 3 0 0 0 0
................................................................................................ACTGGACTTGGTGTCAGAAGGT........................................................... 22 2 9 0.67 6 1 5 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGGAG............................................................. 20 1 20 0.65 13 7 6 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAATT............................................................ 21 1 5 0.60 3 1 2 0 0 0 0
................................................................................................ACTGGACTTGGAGGCAGAAGGT........................................................... 22 2 10 0.60 6 2 4 0 0 0 0
...............................................................................................CACTGGACTTGGAGTCGGAAG............................................................. 21 1 5 0.60 3 0 3 0 0 0 0
................................................................................................ACTGGACTTGGAGTAAGAAG............................................................. 20 1 7 0.57 4 3 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCTGAAGGT........................................................... 22 2 9 0.56 5 3 2 0 0 0 0
................................................................................................ACTGGACTTTGAGTCAGAAG............................................................. 20 1 9 0.56 5 3 2 0 0 0 0
................................................................................................ACCGGACTTGGAGTCAGAAGT............................................................ 21 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................CTGGACTTGGAGTCGGAAGT............................................................ 20 1 2 0.50 1 1 0 0 0 0 0
................................................................................................ATTGGACTTGGAGTCAGAAGT............................................................ 21 1 6 0.50 3 1 2 0 0 0 0
................................................................................................ACTGGACTTCGAGTCAGAAG............................................................. 20 1 8 0.50 4 2 2 0 0 0 0
................................................................................................ACTGGACTTGGAGTCTGAAGT............................................................ 21 1 2 0.50 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCATAAGT............................................................ 21 1 2 0.50 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCCGAAGT............................................................ 21 1 2 0.50 1 0 1 0 0 0 0
................................................................................................ACTCGACTTGGAGTCAGAAGT............................................................ 21 1 2 0.50 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGCAAGGT...................................................... 27 3 2 0.50 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTTAGAAGT............................................................ 21 1 4 0.50 2 0 2 0 0 0 0
...............................................................................................AACTGGACTTGGAGTCAGAAGT............................................................ 22 1 2 0.50 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGTAAA........................................................ 25 3 4 0.50 2 0 2 0 0 0 0
................................................................................................ACTGGATTTGGAGTCAGAAG............................................................. 20 1 20 0.45 9 3 6 0 0 0 0
................................................................................................ACTGGACTTGGAGTCCGAAGGT........................................................... 22 2 9 0.44 4 0 4 0 0 0 0
................................................................................................ACTGGACTTGGAGTCACAAG............................................................. 20 1 7 0.43 3 2 1 0 0 0 0
................................................................................................ACTGGACTTGCAGTCAGAAG............................................................. 20 1 7 0.43 3 2 1 0 0 0 0
...............................................................................................CACTGGACTTGGAGTCAGA............................................................... 19 0 7 0.43 3 0 2 0 1 0 0
................................................................................................ACTGGACTCGGAGTCAGAAGGT........................................................... 22 2 14 0.43 6 1 5 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGACG............................................................. 20 1 7 0.43 3 3 0 0 0 0 0
................................................................................................ACTGGGCTTGGAGTCAGAAGT............................................................ 21 1 5 0.40 2 0 2 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGGAGA......................................................... 23 2 5 0.40 2 0 2 0 0 0 0
................................................................................................ACTGGACTTGGTGTCAGAAG............................................................. 20 1 10 0.40 4 1 3 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGCGAGA....................................................... 26 3 5 0.40 2 0 0 2 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAT.............................................................. 19 1 18 0.39 7 5 1 0 1 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGC............................................................ 20 1 8 0.38 3 3 0 0 0 0 0
................................................................................................ACTGGACTTGCAGTCAGAAGGT........................................................... 22 2 8 0.38 3 3 0 0 0 0 0
................................................................................................TCTGGACTTGGAGTCAGAAGGT........................................................... 22 2 11 0.36 4 2 2 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGCA........................................................... 22 2 11 0.36 4 1 3 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGATG............................................................. 20 1 11 0.36 4 0 4 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAAAAG............................................................. 20 1 14 0.36 5 2 3 0 0 0 0
................................................................................................ACTGAACTTGGAGTCAGAAG............................................................. 20 1 20 0.35 7 4 3 0 0 0 0
................................................................................................ACTGGACTTGGAGTCATAAG............................................................. 20 1 6 0.33 2 1 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGTGGA........................................................ 25 3 3 0.33 1 0 0 0 1 0 0
................................................................................................ACTGGACTTGAAGTCAGAAGT............................................................ 21 1 6 0.33 2 2 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCACAAGGT........................................................... 22 2 9 0.33 3 1 2 0 0 0 0
................................................................................................ACTGGACTTGGAATCAGAAGT............................................................ 21 1 3 0.33 1 0 1 0 0 0 0
...............................................................................................CACTGGACTTGGAGTCAGAA.............................................................. 20 0 6 0.33 2 0 2 0 0 0 0
................................................................................................ACTGGACTTGGAGCCAGAAGT............................................................ 21 1 3 0.33 1 1 0 0 0 0 0
................................................................................................ACTAGACTTGGAGTCAGAAGT............................................................ 21 1 6 0.33 2 2 0 0 0 0 0
..............................................................................................TCACTGGACTTGGAGTCAGAAG............................................................. 22 1 6 0.33 2 1 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGGG.......................................................... 23 2 3 0.33 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGCGAC........................................................ 25 3 6 0.33 2 1 1 0 0 0 0
...............................................................................................AACTGGACTTGGAGTCAGAAG............................................................. 21 1 7 0.29 2 1 1 0 0 0 0
................................................................................................ACTGGACTTGAAGTCAGAAGGT........................................................... 22 2 14 0.29 4 1 3 0 0 0 0
................................................................................................ACTGGAATTGGAGTCAGAAG............................................................. 20 1 11 0.27 3 2 1 0 0 0 0
...............................................................................................CACTGGACTTGGAGTCAGAAGGTA.......................................................... 24 2 8 0.25 2 1 1 0 0 0 0
................................................................................................ACGGGACTTGGAGTCAGAAG............................................................. 20 1 8 0.25 2 2 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCATAAGGT........................................................... 22 2 8 0.25 2 2 0 0 0 0 0
................................................................................................ACTGGACTTGGAATCAGAAGGCGA......................................................... 24 3 4 0.25 1 0 1 0 0 0 0
................................................................................................ACTGGACCTGGAGTCAGAAGT............................................................ 21 1 4 0.25 1 0 1 0 0 0 0
.................................................................................................CTGGACTTGGAGTCGGAAG............................................................. 19 1 8 0.25 2 0 2 0 0 0 0
................................................................................................ACTGGACTTGGAGTCGGAA.............................................................. 19 1 8 0.25 2 2 0 0 0 0 0
................................................................................................TCTGGACTTGGAGTCAGAAGT............................................................ 21 1 4 0.25 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGGGTCAGAAGGCGA......................................................... 24 3 4 0.25 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGAAGTCAGAAG............................................................. 20 1 17 0.24 4 3 1 0 0 0 0
.................................................................................................CTGGACTTGGAGTCGGAAGGT........................................................... 21 2 13 0.23 3 1 2 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGATGGT........................................................... 22 2 9 0.22 2 1 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAATGT........................................................... 22 2 9 0.22 2 1 1 0 0 0 0
................................................................................................ACTCGACTTGGAGTCAGAAGGT........................................................... 22 2 9 0.22 2 2 0 0 0 0 0
...............................................................................................CACTGGACTTGGAGTCAGAAGGAAA......................................................... 25 3 9 0.22 2 2 0 0 0 0 0
................................................................................................ACTGGACTTTGAGTCAGAAGGT........................................................... 22 2 9 0.22 2 2 0 0 0 0 0
................................................................................................ACTGGACTTCGAGTCAGAAGGT........................................................... 22 2 9 0.22 2 2 0 0 0 0 0
.............................................................................................CGCACTGGACTTGGAGTCAGAAGG............................................................ 24 1 5 0.20 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTGAGAAG............................................................. 20 1 10 0.20 2 0 2 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGGAGT............................................................ 21 1 5 0.20 1 0 1 0 0 0 0
................................................................................................GCTGGACTTGGAGTCAGAAGGTA.......................................................... 23 3 20 0.20 4 1 0 3 0 0 0
..................................................................................................TGGACTTGGAGTCAGAAGGCGA......................................................... 22 2 5 0.20 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGACAGAAGGT........................................................... 22 2 10 0.20 2 0 2 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAGGCT........................................................... 22 2 5 0.20 1 1 0 0 0 0 0
................................................................................................ACAGGACTTGGAGTCAGAAG............................................................. 20 1 11 0.18 2 1 1 0 0 0 0
................................................................................................ACTGGAGTTGGAGTCAGAAGGT........................................................... 22 2 11 0.18 2 0 2 0 0 0 0
................................................................................................ACTTGACTTGGAGTCAGAAGGT........................................................... 22 2 11 0.18 2 2 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCGGA............................................................... 18 1 11 0.18 2 2 0 0 0 0 0
................................................................................................ACTGGACTTGGAGACAGAAG............................................................. 20 1 11 0.18 2 2 0 0 0 0 0
................................................................................................ACTGGACTTGGGGTCAGAAGGTA.......................................................... 23 3 17 0.18 3 1 1 1 0 0 0
................................................................................................ACTGGACTTGGAGTGAGAAGGT........................................................... 22 2 12 0.17 2 2 0 0 0 0 0
..............................................................................................GCACTGGACTTGGAGTCAGA............................................................... 20 0 6 0.17 1 1 0 0 0 0 0
................................................................................................ACTGGAATTGGAGTCAGAAGGT........................................................... 22 2 13 0.15 2 1 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAAAAGGT........................................................... 22 2 13 0.15 2 1 1 0 0 0 0
................................................................................................ACAGGACTTGGAGTCAGAAGGT........................................................... 22 2 13 0.15 2 0 2 0 0 0 0
................................................................................................ACTGTACTTGGAGTCAGAAG............................................................. 20 1 13 0.15 2 0 2 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAG................................................................ 16 0 20 0.15 3 1 2 0 0 0 0
................................................................................................ACTGGACCTGGAGTCAGAAGGCGA......................................................... 24 3 7 0.14 1 1 0 0 0 0 0
................................................................................................ACTGGTCTTGGAGTCAGAAG............................................................. 20 1 14 0.14 2 2 0 0 0 0 0
................................................................................................ACTGGACTTGGAGGCGGAAGT............................................................ 21 2 7 0.14 1 0 1 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGGTCA......................................................... 23 2 7 0.14 1 1 0 0 0 0 0
..............................................................................................CAACTGGACTTGGAGTCAGAAG............................................................. 22 2 7 0.14 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGTCGT......................................................... 24 2 7 0.14 1 0 1 0 0 0 0
................................................................................................ACTGGTCTTGGAGTCAGAAGT............................................................ 21 1 7 0.14 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGTTAT........................................................ 25 3 7 0.14 1 0 1 0 0 0 0
..............................................................................................GCTCTGGACTTGGAGTCAGAAG............................................................. 22 1 8 0.13 1 0 0 1 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGTGT......................................................... 24 2 8 0.13 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGCG........................................................... 22 2 8 0.13 1 0 1 0 0 0 0
...............................................................................................CTCTGGACTTGGAGTCAGAAG............................................................. 21 1 8 0.13 1 0 1 0 0 0 0
................................................................................................ACCGGACTTGGAGTCAGAA.............................................................. 19 1 8 0.13 1 0 1 0 0 0 0
...............................................................................................AACTGGACTTGGAGTCAGAAGGT........................................................... 23 2 9 0.11 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCGGAAGGTT.......................................................... 23 3 18 0.11 2 0 2 0 0 0 0
................................................................................................ACTGGACTTGGAGTAAGAAGGT........................................................... 22 2 9 0.11 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGGAA......................................................... 24 3 9 0.11 1 1 0 0 0 0 0
................................................................................................ACGGGACTTGGAGTCGGAAG............................................................. 20 2 9 0.11 1 1 0 0 0 0 0
................................................................................................ACTCGACTTGGAGTCAGAA.............................................................. 19 1 9 0.11 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGAAGTCAGA............................................................... 18 1 20 0.10 2 2 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGGCG............................................................. 20 2 20 0.10 2 1 1 0 0 0 0
................................................................................................ACTTGACTTGGAGTCAGAAG............................................................. 20 1 10 0.10 1 1 0 0 0 0 0
................................................................................................GCTGGACTTGGAGTCGGAAG............................................................. 20 2 20 0.10 2 1 1 0 0 0 0
................................................................................................ACTGGACGTGGAGTCAGAAG............................................................. 20 1 10 0.10 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGACGGT........................................................... 22 2 10 0.10 1 1 0 0 0 0 0
.................................................................................................CTGGACTTGGAGTAAGAAG............................................................. 19 1 11 0.09 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGATTCAGAAG............................................................. 20 1 12 0.08 1 1 0 0 0 0 0
..............................................................................................ACACTGGACTTGGAGTCAGAAG............................................................. 22 1 12 0.08 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGCGTCAGA............................................................... 18 1 12 0.08 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGGGTCGGAAG............................................................. 20 2 12 0.08 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGGTAG......................................................... 24 3 14 0.07 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGCAGTCAGAAGGTA.......................................................... 23 3 14 0.07 1 1 0 0 0 0 0
................................................................................................ACTGGTCTTGGAGTCAGAAGGT........................................................... 22 2 15 0.07 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCGGATG............................................................. 20 2 16 0.06 1 1 0 0 0 0 0
...................................................................................................GGACTTGGAGTCAGAAG............................................................. 17 0 16 0.06 1 1 0 0 0 0 0
.................................................................................................CTGGACTTGGACTCAGAAG............................................................. 19 1 16 0.06 1 0 1 0 0 0 0
.................................................................................................CTGGACTTGGAGTAAGAAGGT........................................................... 21 2 17 0.06 1 0 1 0 0 0 0
................................................................................................CCTGGACTTGGAGTCAGAAGGT........................................................... 22 2 17 0.06 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGGGTCGGAAGGT........................................................... 22 3 17 0.06 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGGGTCAGA............................................................... 18 1 17 0.06 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGAAGAAAA......................................................... 24 3 17 0.06 1 1 0 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGATGTGT.......................................................... 23 3 18 0.06 1 1 0 0 0 0 0
.................................................................................................CTGGACCTGGAGTCAGAAGGCGA......................................................... 23 3 18 0.06 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCATA............................................................... 18 1 18 0.06 1 1 0 0 0 0 0
...................................................................................TGGCTGGAAAAGCACTGCACTT........................................................................ 22 3 19 0.05 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGAGTCAGACC............................................................. 20 2 20 0.05 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGAGGCCGAAG............................................................. 20 2 20 0.05 1 0 1 0 0 0 0
................................................................................................ACTGGACTTGGCGGCAGAAG............................................................. 20 2 20 0.05 1 0 0 1 0 0 0
................................................................................................ACTGGACTTGGAGACAGAAGGTT.......................................................... 23 3 20 0.05 1 1 0 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGCA........................................................... 21 2 20 0.05 1 0 1 0 0 0 0
................................................................................................ACTGGACTTTGAGTCCGAAG............................................................. 20 2 20 0.05 1 1 0 0 0 0 0
................................................................................................ACTTGACTTGGAGTCAGA............................................................... 18 1 20 0.05 1 1 0 0 0 0 0
.................................................................................................CTGGACTTGGAGTCAGAAGGTAG......................................................... 23 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

CAGTTGCGGAGACCTTAGAGGTCGGGTCACGGGAACCGAACCACGGTGGGAACTCGATGTAAACGAACGCAAGAGATTCACAGACCGACttttgCgtgACCtgAACCtCAgtCttCAACtCCAAggACAgggtgAttCCtCgttCCttgtgAACCAAttCAggggACCCAggggAAC

***********************************..((........(((...(((((((...((..(((....((((.......(((......)))......)))))))..))...))))))).....)))........))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:22 AM