ID:

ssc-mir-363-1

 Coordinate:

chrX:126199347-126199426 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.5 -36.0 -35.9

Sense Strand Reads

GGCTGTAAGTTCTGATATTTCTATTTGGTAATTGCGAAGTGACCTGTTTTGCTGTTGTCGGGTGGATCACGATGCAATTTTGATTAGTATCATAGGAGAAAAATTGCACGGTATCCATCTGTAAACCGCAGGACCCTTGCTGACGACCGGCTGTGTCAGTACTTAGGTGAGATGGTAAAA

*******************************************..(((((((.(((..(((((((((..((.(((((((((..(((......)))....)))))))))))..)))))))))..))).)))))))....****************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066809

ovary		 SRR139076

testes		 SRR1274764

testes		 SRR066810

testes		 SRR1274763

ovary
.....................................................................................................AATTGCACGGTATCCATCTGTA......................................................... 22 0 1 193.00 193 122 40 9 2 15 5
.....................................................................................................AATTGCACGGTATCCATCTGTAA........................................................ 23 0 1 147.00 147 103 9 25 4 1 5
.....................................................................................................AATTGCACGGTATCCATCTGT.......................................................... 21 0 1 114.00 114 40 18 9 21 14 12
.....................................................................................................AATTGCACGGTATCCATCTGTAT........................................................ 23 1 1 89.00 89 59 5 17 6 0 2
......................................................................................................ATTGCACGGTATCCATCTGTAA........................................................ 22 0 1 45.00 45 33 2 5 1 2 2
.....................................................................................................AATTGCACGGTATCCATCTG........................................................... 20 0 1 27.00 27 19 2 1 2 0 3
.....................................................................................................AATTGCACGGTATCCATCT............................................................ 19 0 1 19.00 19 18 0 0 0 0 1
......................................................................................................ATTGCACGGTATCCATCTGTA......................................................... 21 0 1 19.00 19 8 6 2 0 2 1
......................................................................................................ATTGCACGGTATCCATCTGTAT........................................................ 22 1 1 16.00 16 14 0 0 2 0 0
......................................................................................................ATTGCACGGTATCCATCTGT.......................................................... 20 0 1 15.00 15 10 0 0 1 2 2
.....................................................................................................AATTGCACGGTATCCATC............................................................. 18 0 1 6.00 6 0 0 1 1 0 4
.....................................................................................................AATTGCACGGTATCCATCTGTTT........................................................ 23 2 1 5.00 5 4 0 0 0 1 0
.....................................................................................................AATTGCACGGTATCCATCTGTAG........................................................ 23 1 1 5.00 5 4 1 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTGTT......................................................... 22 1 1 4.00 4 2 2 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTGA.......................................................... 21 1 1 4.00 4 3 1 0 0 0 0
.....................................................................................................AATTGCACGGTATCCA............................................................... 16 0 1 3.00 3 3 0 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATTTGTA......................................................... 22 1 1 3.00 3 0 1 2 0 0 0
.....................................................................................................AATTGCACGGTACCCATCTGTAA........................................................ 23 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................................AATTGTACGGTATCCATCTGT.......................................................... 21 1 1 2.00 2 2 0 0 0 0 0
......................................................................................................ATTGCACGGTATCCATCTGTAAT....................................................... 23 1 1 2.00 2 1 0 0 1 0 0
.....................................................................................................AATTGCACGGTATCCATTTGT.......................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................................AATTGCACGGGATCCATCTGT.......................................................... 21 1 1 2.00 2 1 0 1 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTGTAGT....................................................... 24 2 1 2.00 2 1 0 0 0 1 0
..........................................................CGGGTGGATCACGATGCAATTT.................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTGTAGA....................................................... 24 1 1 2.00 2 1 1 0 0 0 0
.....................................................................................................AATTGCACGGGATCCATCTGTA......................................................... 22 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................................ACGGTATCCATCTGTA......................................................... 16 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTGTAAGAA..................................................... 26 3 1 1.00 1 0 0 0 0 1 0
.....................................................................................................AATAGCACGGTATCCATCTGTA......................................................... 22 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................ATTGCACGGTATCCATCTGTAAA....................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTA........................................................... 20 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................ATTGCACGGTATCCATCTGTT......................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTGTAAG....................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTGAA......................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................CGGGTGGATCACGATGCAATTTTGAT................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................ATTTGCACGGTATCCATCTGTCA........................................................ 23 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACGGGATCCATCTGTAT........................................................ 23 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTTT.......................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................ATTTGCACGGTATCCATCTGTAA........................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACGGGCTCCATCTGTCA........................................................ 23 3 1 1.00 1 0 0 1 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTGAAA........................................................ 23 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................ATTGCACGGTATCCATCTGTAGA....................................................... 23 1 1 1.00 1 0 0 0 0 1 0
.....................................................................................................AATTGCACGGTATCCCTCTGTAA........................................................ 23 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................ATTGCACGGTATCCAGCTG........................................................... 19 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACGGTATCCCTCTGTAT........................................................ 23 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACGGTATTCATCTGT.......................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTGTAAAAAA.................................................... 27 3 1 1.00 1 0 0 1 0 0 0
.....................................................................................................AATTGCATGGTATCCATCTGT.......................................................... 21 1 1 1.00 1 0 0 0 1 0 0
.....................................................................................................ACTTGCACGGTATCCATCTGTAA........................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTCTA......................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTGCACGGTATCCATCTGTAA........................................................ 21 0 1 1.00 1 0 0 0 0 0 1
......................................................................................................ATTGCGCGGTATCCATCTG........................................................... 19 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTGTAAA....................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACGGGATCCATCTGTAA........................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACTGTATCCATCTGTAA........................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACAGTATCCATCTGTAA........................................................ 23 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................ATTGCACGGTATCCATCT............................................................ 18 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTACACGGTATCCATCTGTAA........................................................ 23 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................ACTTGCACGGTATCCATCTGTAT........................................................ 23 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATCTGTAC........................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................AATTGCACGGTATCCACCTGTAT........................................................ 23 2 1 1.00 1 1 0 0 0 0 0
......................................................................................................ATTGCACGGTATCCATCTGTATT....................................................... 23 2 1 1.00 1 0 0 1 0 0 0
......................................................................................................AATTCACGGTATCCATCTGTA......................................................... 21 2 3 0.33 1 0 0 0 0 1 0
......................................................................................................ATTGCACGGTATCCATCTGCGT........................................................ 22 3 4 0.25 1 0 1 0 0 0 0
.....................................................................................................AATTGCACGGTATCCATTTTT.......................................................... 21 2 4 0.25 1 1 0 0 0 0 0

Anti-sense strand reads

CCGACATTCAAGACTATAAAGATAAACCATTAACGCTTCACTGGACAAAACGACAACAGCCCACCTAGTGCTACGTTAAAACTAATCATAGTATCCTCTTTTTAACGTGCCATAGGTAGACATTTGGCGTCCTGGGAACGACTGCTGGCCGACACAGTCATGAATCCACTCTACCATTTT

******************************************..(((((((.(((..(((((((((..((.(((((((((..(((......)))....)))))))))))..)))))))))..))).)))))))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139076

testes
.................................................................TAGTGCTACGTTAAA.................................................................................................... 15 0 2 0.50 1 1 0
......................................................................................................................................GGAACGACTGCGGGCAGACAG......................... 21 3 20 0.05 1 0 1

Generated: 09/01/2015 at 11:44 AM