ID:

ssc-mir-361

 Coordinate:

chrX:78804780-78804859 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.4 -12.1 -12.1 -11.8

Sense Strand Reads

ACACAACAGTAGCTGTGGCATGCTCCACGGTGATTCTTCCCTGGGATTTGGGAGCTTtTgtGttTgTggtGGGGTtgTTtTttTTTGtttttGTgggggtGGTGTGtTTgTGtTTTGCTTCCTCCTCCTCCTCCTCTGAGAATCACTGATCCATCTAGAAGCTTCAGCATAAATAGGCAC

****************************************..((((...((((((.............................................................))))))...)).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066809

ovary		 SRR1274763

ovary		 SRR139076

testes		 SRR066810

testes		 SRR1274764

testes
.......................................................TTATCAGAATCTCCAGGGGTAC....................................................................................................... 22 0 1 1472.00 1472 854 125 237 120 49 87
.......................................................TTATCAGAATCTCCAGGGGTAT....................................................................................................... 22 1 1 244.00 244 177 19 5 28 13 2
.......................................................TTATCAGAATCTCCAGGGGTAA....................................................................................................... 22 1 1 200.00 200 143 18 13 16 5 5
.......................................................TTATCAGAATCTCCAGGGGTACA...................................................................................................... 23 1 1 182.00 182 130 21 11 7 6 7
.......................................................TTATCAGAATCTCCAGGGGTA........................................................................................................ 21 0 1 177.00 177 87 31 15 14 26 4
.......................................................TTATCAGAATCTCCAGGGGT......................................................................................................... 20 0 1 99.00 99 32 37 1 4 19 6
.......................................................TTATCAGAATCTCCAGGGGTACT...................................................................................................... 23 0 1 89.00 89 36 11 26 2 8 6
.............................................................................................TCCCCCAGGTGTGATTCTGATT................................................................. 22 0 1 37.00 37 8 11 13 0 4 1
..............................................................................................CCCCCAGGTGTGATTCTGATTTGC.............................................................. 24 0 1 34.00 34 5 16 6 1 4 2
.............................................................................................TCCCCCAGGTGTGATTCTGATTT................................................................ 23 0 1 21.00 21 9 4 1 3 3 1
.......................................................TTATCAGAATCTCCAGGGGTACAT..................................................................................................... 24 1 1 19.00 19 16 1 1 1 0 0
.......................................................TTATCAGAATCTCCAGGGGTAAA...................................................................................................... 23 2 1 18.00 18 12 4 1 0 1 0
.......................................................TTATCAGAATCTCCAGGGG.......................................................................................................... 19 0 1 17.00 17 5 0 3 1 8 0
........................................................TATCAGAATCTCCAGGGGTAC....................................................................................................... 21 0 1 16.00 16 10 2 3 1 0 0
.......................................................TTATCAGAATCTCCAGGGGTATT...................................................................................................... 23 1 1 16.00 16 13 0 1 2 0 0
............................................................AGAATCTCCAGGGGTAC....................................................................................................... 17 0 1 15.00 15 14 0 1 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTACG...................................................................................................... 23 1 1 14.00 14 12 0 1 0 0 1
.............................................................................................TCCCCCAGGTGTGGTTCTGATTCG............................................................... 24 2 1 14.00 14 0 11 0 0 3 0
..............................................................................................CCCCCAGGTGTGATTCTGATTTG............................................................... 23 0 1 12.00 12 2 4 3 2 1 0
.......................................................TTATCAGAATCTCCAGGGGTAAT...................................................................................................... 23 1 1 12.00 12 7 3 0 2 0 0
..............................................................................................CCCCCAGGTGTGATTCTGATT................................................................. 21 0 1 9.00 9 0 5 3 0 1 0
......................................................CTTATCAGAATCTCCAGGGGTAC....................................................................................................... 23 0 1 8.00 8 3 0 1 2 1 1
..............................................................................................CCCCCAGGTGTGATTCTGATTT................................................................ 22 0 1 8.00 8 1 6 1 0 0 0
.............................................................................................TCCCCCAGGTGTGATTCTGATTTG............................................................... 24 0 1 7.00 7 0 6 1 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTACC...................................................................................................... 23 1 1 7.00 7 4 1 0 0 0 2
.......................................................TTATCAGAATCTCCAGGGGTACAA..................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
.......................................................TTATCAGAATCTCCCGGGGTAC....................................................................................................... 22 1 1 5.00 5 5 0 0 0 0 0
.............................................................................................TCCCCCAGGTGTGATTCTGATTTGC.............................................................. 25 0 1 5.00 5 0 4 0 0 1 0
.......................................................TTATCAGAATCTCCAGGGGA......................................................................................................... 20 1 1 5.00 5 4 0 1 0 0 0
.............................................................................................TCCCCCAGGTGTGATTCTGAT.................................................................. 21 0 1 5.00 5 1 2 2 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTT........................................................................................................ 21 1 1 5.00 5 3 1 0 0 1 0
.......................................................TTATCAGAATCTCCAGGG........................................................................................................... 18 0 1 5.00 5 0 4 0 0 1 0
..............................................................................................CCCCCAGGTGTGGTTCTGATTCGT.............................................................. 24 3 1 5.00 5 0 3 0 0 2 0
.............................................................................................TCCCCCAGGTGTGGTTCTGATT................................................................. 22 1 1 4.00 4 0 2 0 0 2 0
.......................................................TTATCAGAATCTCCAGTGGTAC....................................................................................................... 22 1 1 4.00 4 2 1 0 1 0 0
.......................................................TTATCAGAATCTCCAGGGGTACTT..................................................................................................... 24 0 1 4.00 4 2 0 0 0 1 1
.......................................................TTATTAGAATCTCCAGGGGTAC....................................................................................................... 22 1 1 4.00 4 3 0 0 0 0 1
.......................................................TTATTAGAATCTCCAGGGGTAA....................................................................................................... 22 2 1 3.00 3 3 0 0 0 0 0
.......................................................TTATCAGAATCTTCAGGGGTAC....................................................................................................... 22 1 1 3.00 3 2 0 1 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTAGA...................................................................................................... 23 2 1 3.00 3 0 2 1 0 0 0
......................................................CTTATCAGAATCTCCAGGGGTAT....................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGGAC....................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
.......................................................TTATCAGAATCTCTAGGGGTAC....................................................................................................... 22 1 1 3.00 3 1 0 1 0 0 1
.......................................................TTATCAGAATCTCCAGGGGAA........................................................................................................ 21 1 1 3.00 3 1 0 0 1 0 1
..............................................................................................CCCCCAGGTGTGATTCTGATTTGT.............................................................. 24 1 1 2.00 2 0 2 0 0 0 0
.......................................................ATATCAGAATCTCCAGGGGTAC....................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................CCCCAGGTGTGATTCTGATTTGC.............................................................. 23 0 1 2.00 2 0 2 0 0 0 0
..............................................................................................CCCCCAGGTGTGATTCTGATTTGA.............................................................. 24 1 1 2.00 2 0 1 0 0 0 1
.........................................................ATCAGAATCTCCAGGGGTA........................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0
......................................................CTTATCAGAATCTCCAGGGGTACT...................................................................................................... 24 0 1 2.00 2 0 1 1 0 0 0
.......................................................TTATCATAATCTCCAGGGGTAC....................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGAAC....................................................................................................... 22 1 1 2.00 2 1 0 0 1 0 0
.......................................................TTATCAGAATCTCCAGGGGCAC....................................................................................................... 22 1 1 2.00 2 1 0 0 1 0 0
.......................................................TTATCAGAATCTCCAGGGGTATTT..................................................................................................... 24 1 1 2.00 2 1 0 0 1 0 0
...............................................................................................CCCCAGGTGTGATTCTGATTT................................................................ 21 0 1 2.00 2 1 1 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTACAAA.................................................................................................... 25 2 1 2.00 2 0 1 1 0 0 0
.......................................................CTATCAGAATCTCCAGGGGTAT....................................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.......................................................TTCTCAGAATCTCCAGGGGTAC....................................................................................................... 22 1 1 2.00 2 1 0 0 0 0 1
..............................................................................................CCCCCAGGTGTGATTCTGATTTGCT............................................................. 25 0 1 2.00 2 0 0 2 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTAAGT..................................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTATA...................................................................................................... 23 2 1 2.00 2 1 1 0 0 0 0
....................................TTCCCTGGGATTTGGGAGC............................................................................................................................. 19 0 3 1.33 4 0 3 0 0 1 0
........................................................TATCAGAATCTCCAGGGGTAA....................................................................................................... 21 1 4 1.25 5 5 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTCC....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTGTCAGAATCTCCAGGGGTAAT...................................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................TCCCCCAGGTGTGGTTCTGATTCGT.............................................................. 25 3 1 1.00 1 0 1 0 0 0 0
.......................................................TTATCAGAATCTCCAGCGGTAC....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCATGGGTACA...................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGTGTAC....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................CCTCCAGGTGTGATTCTGATT................................................................. 21 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TCCCCCAGGTGTGGTTCTGATA................................................................. 22 2 1 1.00 1 0 0 0 0 1 0
.......................................................TTATCAGAATCTCCAGGGGTTG....................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.......................................................TTATCAGAATCTCCAAGGGTAC....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
....................................................TGGTTATCAGAATCTCCAGGGGTAC....................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GTCCCCCAGGTGTGATTCTGATT................................................................. 23 0 1 1.00 1 0 0 0 0 1 0
.......................................................TTATCAGAATCTCCAGGGGTAGT...................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.......................................................TTATCAGAATCTCCAGCGGTA........................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTACCGT.................................................................................................... 25 3 1 1.00 1 0 0 0 0 1 0
.............................................................................................TCCCCCAGGTGTGATTCTGA................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCCGAATCTCCAGGGGTAC....................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
.............................................................................................TCCCCCAGGTGTGATTCTGATA................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
.......................................................TTATCAGAATTTCCAGGGGTAC....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
......................................................TTTATCAGAATCTCCAGGGGTA........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
......................................................CTTATCAGAATCTCCAGGGGTA........................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0
......................................................CTTATCAGAATCTCCAGGGG.......................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTTCAGGGGTA........................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTACATT.................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCCCCCAGGTGTGATTCTGATTTT............................................................... 24 1 1 1.00 1 0 1 0 0 0 0
.......................................................TTATCAGAATCTCCAGTGGTA........................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTACGT..................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTACCA..................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
......................................................CTTATCAGAATCTCCAGGGGTACGT..................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAAGGGTACA...................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.......................................................CTATCAGAATCTCCAGGGGTA........................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................CCCCAGGTGTGATTCTGATTTG............................................................... 22 0 1 1.00 1 0 0 0 0 0 1
.......................................................TTATCAGCATCTCCAGGGGTAC....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTAG....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGCGTAC....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCCCCAGGGGTAC....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................CCCCCAGGTGTGATTCTGATA................................................................. 21 1 1 1.00 1 0 0 1 0 0 0
..............................................................................................CCCCCAGGTGTGATTCTGATTTA............................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.......................................................TTATTAGAATCTCCAGGGGTACACA.................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0
.............................................................................................TCCCACAGGTGTGATTCTGATT................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
........................................................TATCAGAATCTCCAGGGGTACT...................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTACGGAC................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGATAC....................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0
.............................................................................................TCCCCGAGGTGTGATTCTGA................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAGTCTCCAGGGGTA........................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
......................................................ATTATCAGAATCTCCAGGGGTAAA...................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGCATCTCCAGGGGT......................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCATGGGTAC....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCTGGGGTAC....................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTACTG..................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 1
..............................................................................................CCCCCAGGTGTGGTTCTGATTCGTT............................................................. 25 3 1 1.00 1 0 1 0 0 0 0
........................................................TATCAGAATCTCCAGGGGTACG...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................TATCAGAATCTCCAGGGGTACA...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCCCCCAGGCGTGATTCTGCTT................................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.......................................................TTATCAGAATCTCCTGGGGTA........................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
.......................................................TTATCAGGATCTCCAGGGGTAC....................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0
.......................................................TTATCAGAATCTCCAGGGGTCTT...................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
........................................................TATCAGAATCTCCAGGGGTAT....................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
........................................................TATCAGAATCTCCAGGGGTACTA..................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTACGA..................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.......................................................TCATCAGAATCTCCAGGGGTAC....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGGAT....................................................................................................... 22 2 3 0.67 2 1 1 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGAAT....................................................................................................... 22 2 5 0.60 3 1 1 1 0 0 0
.......................................................TTATCAGAATCTCCCGGGGTAA....................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTAAC...................................................................................................... 23 2 2 0.50 1 0 0 0 0 0 1
.......................................................TTATCAGAATCTCTAGGGGTA........................................................................................................ 21 1 2 0.50 1 0 1 0 0 0 0
.......................................................TTATCAGAATCTCCAGG............................................................................................................ 17 0 2 0.50 1 1 0 0 0 0 0
.......................................................TTATCAGACTCTCCAGGGGTACA...................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGATAA....................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTATG...................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0
.............................................................................................TTCCCCAGGTGTGGTTCTGATTCG............................................................... 24 3 2 0.50 1 0 0 0 0 1 0
.......................................................TTATCAGAATCTCCAGGGGTACAGT.................................................................................................... 25 3 2 0.50 1 0 1 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTATAA..................................................................................................... 24 3 2 0.50 1 1 0 0 0 0 0
.....................................TCCCTGGGATTTGGGAGC............................................................................................................................. 18 0 3 0.33 1 0 1 0 0 0 0
..........................................................TCAGAATCTCCAGGGGTACA...................................................................................................... 20 1 3 0.33 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTG........................................................................................................ 21 1 3 0.33 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCCGGGGTAAC...................................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGGAA....................................................................................................... 22 2 6 0.33 2 2 0 0 0 0 0
.............................................................................................TCCCCCAGGTGTGATTCTGAAA................................................................. 22 2 3 0.33 1 0 0 1 0 0 0
.......................................................TTATCAGAATCTCCAGGGGGA........................................................................................................ 21 1 3 0.33 1 0 1 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGTCA....................................................................................................... 22 2 3 0.33 1 0 0 0 1 0 0
............................................................AGAATCTCCAGGGGTACA...................................................................................................... 18 1 11 0.27 3 2 0 0 1 0 0
.......................................................TTATCAGAATCCCCAGGGGTAA....................................................................................................... 22 2 5 0.20 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGA.......................................................................................................... 19 1 10 0.20 2 1 0 1 0 0 0
.......................................................TTATCAGAATCTCCAGGGGAAA....................................................................................................... 22 2 6 0.17 1 0 0 1 0 0 0
...........................................................TAGAATCTCCAGGGGTAC....................................................................................................... 18 1 7 0.14 1 0 0 0 1 0 0
.......................................................ATATCAGAATCTCCGGGGGTA........................................................................................................ 21 2 13 0.08 1 0 0 0 1 0 0
.......................................................TTATCAGAATCTCCAGGGGTCAA...................................................................................................... 23 3 13 0.08 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGAAA........................................................................................................ 21 2 16 0.06 1 1 0 0 0 0 0
...............................................................................................CCCCCAGTGTGATTCTGATT................................................................. 20 2 20 0.05 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGTA......................................................................................................... 20 2 20 0.05 1 1 0 0 0 0 0
.......................................................TTATCAGAATCTCCAGGGGAAAA...................................................................................................... 23 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TGTGTTGTCATCGACACCGTACGAGGTGCCACTAAGAAGGGACCCTAAACCCTCGAAtAgtCttAgAggtCCCCAtgAAtAttAAACtttttCAgggggtCCACACtAAgACtAAACGAAGGAGGAGGAGGAGGAGACTCTTAGTGACTAGGTAGATCTTCGAAGTCGTATTTATCCGTG

**************************************************..((((...((((((.............................................................))))))...)).))**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:44 AM