ID:

ssc-mir-345-1

Coordinate:

chr7:128658300-128658379 +

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-47.9 -47.8 -47.5

Sense Strand Reads

TTTATGCTTCCTCCAATCGAAATAGAACATTCATTACGAAGAGACCcccaaacccaggtctgctgactcctagtccagtgctTGTGATGGCTGGTGGGCCCTGAACTAGGGGTCTGGAGGCCTGGGTTTGCATTTCGCCAGCCTCAGGCCCAGCTCATGCTCCACAAGGCAGGAGTTGAC

**********************************************..(((((((((((((...((((((((((.(((.((((((........)))))).))).))))))))))...)))))))))))))....**********************************************
Read size # Mismatch Hit Count Total Norm Total SRR139075

testes
SRR139076

testes
SRR066809

ovary
SRR066810

testes
SRR1274764

testes
SRR1274763

ovary
...................................................................................................CCTGAACTAGGGGTCTGGAGT............................................................ 21 1 1 426.00 426 318 53 22 12 10 11
..................................................................................................CCCTGAACTAGGGGTCTGGAGT............................................................ 22 1 1 305.00 305 215 52 5 3 21 9
..................................................................................................CCCTGAACTAGGGGTCTGGAG............................................................. 21 0 1 255.00 255 202 27 7 8 8 3
.............................................................GCTGACTCCTAGTCCAGTGCT.................................................................................................. 21 0 1 183.00 183 69 28 43 31 5 7
...................................................................................................CCTGAACTAGGGGTCTGGAG............................................................. 20 0 1 147.00 147 115 23 5 2 2 0
..................................................................................................CCCTGAACTAGGGGTCTGGAGA............................................................ 22 1 1 50.00 50 40 7 0 0 2 1
.............................................................GCTGACTCCTAGTCCAGTGCTA................................................................................................. 22 1 1 28.00 28 12 0 5 11 0 0
.............................................................GCTGACTCCTAGTCCAGTGC................................................................................................... 20 0 1 21.00 21 11 3 4 3 0 0
...................................................................................................CCTGAACTAGGGGTCTGGAGA............................................................ 21 1 2 17.50 35 26 7 1 0 0 1
..................................................................................................CCCTGAACTAGGGGTCTGGA.............................................................. 20 0 1 15.00 15 14 0 0 0 0 1
.............................................................GCTGACTCCTAGTCCAGTGCTT................................................................................................. 22 0 1 15.00 15 6 1 5 2 1 0
..................................................................................................CCCTGAACTAGGGGTCTGGAA............................................................. 21 1 1 13.00 13 12 0 1 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGGA.............................................................. 19 0 1 13.00 13 9 3 0 0 0 1
.............................................................GCTGACTCCTAGTCCAGTG.................................................................................................... 19 0 1 12.00 12 0 1 2 7 1 1
...................................................................................................CCTGAACTAGGGGTCTGGAT............................................................. 20 1 1 9.00 9 9 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGAGTT........................................................... 23 2 1 9.00 9 8 0 0 0 0 1
...................................................................................................CCTGAACTAGGGGTCTGGAGTT........................................................... 22 2 1 9.00 9 6 2 0 0 1 0
...................................................................................................CCTGAACTAGGGGTCTGGAA............................................................. 20 1 1 8.00 8 8 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGGAGTA........................................................... 22 2 1 7.00 7 3 1 0 2 0 1
...................................................................................................CCTGAACTAGGGGTCTGGAGTAT.......................................................... 23 3 1 7.00 7 5 2 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGAAA............................................................ 22 2 1 7.00 7 4 2 0 0 0 1
..................................................................................................CCCTGAACTAGGGGTCTGGAGAA........................................................... 23 2 1 6.00 6 4 2 0 0 0 0
....................................................................................................CTGAACTAGGGGTCTGGAGT............................................................ 20 1 1 6.00 6 6 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGG............................................................... 19 0 1 5.00 5 1 1 0 0 3 0
...................................................................................................CCTGAACTAGGGGTCTGGAGTTT.......................................................... 23 3 2 5.00 10 9 0 1 0 0 0
..................................................................................................CCCTGAACTAGGGGTCT................................................................. 17 0 1 5.00 5 4 1 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGAGTA........................................................... 23 2 1 5.00 5 3 1 0 0 0 1
..................................................................................................CCCTGAACTAGGGGTCTGGAGTAT.......................................................... 24 3 1 4.00 4 3 1 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGCTG................................................................................................. 22 1 2 4.00 8 1 0 0 2 5 0
..................................................................................................CCCTGAGCTAGGGGTCTGGAG............................................................. 21 1 2 4.00 8 0 0 4 4 0 0
...................................................................................................CCTGAACTAGGGGTCTGGAGTAA.......................................................... 23 3 2 3.00 6 5 0 0 1 0 0
.............................................................GCTGACTCCTAGTCCAGTGCTAG................................................................................................ 23 1 1 3.00 3 0 0 1 2 0 0
.............................................................GCTGACTCCTAGTCCAGTGCTAA................................................................................................ 23 2 1 3.00 3 1 2 0 0 0 0
...................................................................................................CCTGAGCTAGGGGTCTGGAG............................................................. 20 1 2 2.50 5 0 0 3 2 0 0
...................................................................................................CCTGAACTAGGGGTCTGGAAA............................................................ 21 2 3 2.33 7 6 1 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGA................................................................................................... 20 1 3 2.33 7 0 0 4 3 0 0
...................................................................................................CCTGAACTAGGGGTCTGGAGAA........................................................... 22 2 2 2.00 4 3 1 0 0 0 0
..................................................................................................CCCTGAACTAAGGGTCTGGAGT............................................................ 22 2 1 2.00 2 1 1 0 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGGAGTTA.......................................................... 23 3 1 2.00 2 1 1 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGAGTTT.......................................................... 24 3 1 2.00 2 2 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGAAT............................................................ 22 2 2 2.00 4 1 3 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGCAT................................................................................................. 22 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGAAG............................................................. 21 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................CCCTGACCTAGGGGTCTGGAG............................................................. 21 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGGCTGGAG............................................................. 21 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGGG............................................................. 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGT................................................................................................... 20 1 3 1.67 5 0 0 1 4 0 0
...................................................................................................CCTGCACTAGGGGTCTGGAGT............................................................ 21 2 3 1.33 4 3 1 0 0 0 0
..................................................................................................CCCTGAACTAGGGGGCTGGAGA............................................................ 22 2 3 1.33 4 4 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGAGTC........................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGCTAAT............................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
............................................................TGCTGACTCCTAGTCCAGTG.................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGGAGGT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................GCTGACCCCTAGTCCAGTGCT.................................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0
...................................................................................................CCTGACCTAGGGGTCTGGA.............................................................. 19 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTG................................................................ 18 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGGAGGCA.......................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGCTTT................................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGAT............................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGGAAG............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGGCGT............................................................ 21 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGCCTGGAGT............................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGAGAT........................................................... 23 2 2 1.00 2 2 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGGAGG............................................................ 21 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGACTGGAT............................................................. 21 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCGGGAG............................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CCTCAACTAGGGGTCTGGAG............................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTTGAGA............................................................ 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................CCTGAGCTAGGGGTCTGGAGG............................................................ 21 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................CCCTGAAGTAGGGGTCTGGAGT............................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAGCTAGGGGTCTGGA.............................................................. 20 1 2 1.00 2 0 0 0 2 0 0
..................................................................................................ACCTGAACTAGGGGTCTGGAGT............................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................ACCTGAACTAGGGGTCTGGAG............................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTCGGGGTCTGGAG............................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGGAGAT........................................................... 22 2 3 1.00 3 3 0 0 0 0 0
..................................................................................................CCCCGAACTAGGGGTCTGGAGT............................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGAGTG........................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAATTAGGGGTCTGGAG............................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGAGTAGT......................................................... 25 3 1 1.00 1 0 0 0 0 0 1
..................................................................................................CCCTGGACTAGGGGTCTGGA.............................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGCG............................................................. 21 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGAGAAA.......................................................... 24 3 1 1.00 1 1 0 0 0 0 0
...................................................................................................CCCGAACTAGGGGTCTGGAGT............................................................ 21 2 1 1.00 1 1 0 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGCTTGTGATGGCTGGTGGGCCCTGAACTAGGGGTCTGGAG............................................................. 58 0 1 1.00 1 0 0 0 0 0 1
..................................................................................................CCCTGAACTAGCGGTCTGGAGT............................................................ 22 2 1 1.00 1 0 0 0 0 1 0
..................................................................................................CCCTGACCTAGGGGTCTGGA.............................................................. 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGG............................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGATT............................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGAGTTTT......................................................... 25 3 1 1.00 1 0 1 0 0 0 0
.............................................................GCTGACTCTTAGTCCAGTGCT.................................................................................................. 21 1 2 1.00 2 1 0 1 0 0 0
..................................................................................................CCCTGAACTAGGGTTCTGGAG............................................................. 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTTCT.................................................................................................. 21 1 2 0.50 1 0 1 0 0 0 0
..................................................................................................CCCTGAACTGGGGGTCTGGAG............................................................. 21 1 2 0.50 1 0 1 0 0 0 0
.............................................................GCTGACTTCTAGTCCAGTGCTT................................................................................................. 22 1 2 0.50 1 0 1 0 0 0 0
.............................................................GCTGAATCCTAGTCCAGTGC................................................................................................... 20 1 2 0.50 1 0 1 0 0 0 0
............................................................TGCTGACCCCTAGTCCAGTGC................................................................................................... 21 1 2 0.50 1 0 0 1 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGTT.................................................................................................. 21 1 2 0.50 1 0 0 0 1 0 0
...................................................................................................CCTGAACTAGGGGTCTAGAG............................................................. 20 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................CCTGAGCTAGGGGTCTGGA.............................................................. 19 1 2 0.50 1 0 0 0 1 0 0
..................................................................................................TCCTGAACTAGGGGTCTGGAG............................................................. 21 1 2 0.50 1 1 0 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGCTGA................................................................................................ 23 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGTAGT............................................................ 21 2 2 0.50 1 1 0 0 0 0 0
.............................................................GCTGGCTCCTAGTCCAGTGCT.................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGATAT........................................................... 23 3 2 0.50 1 0 1 0 0 0 0
..................................................................................................CCCTGAGCTAGGGGTCTGGAT............................................................. 21 2 4 0.50 2 0 0 1 1 0 0
...................................................................................................CCTGAACTAGGGGTATGGAGT............................................................ 21 2 2 0.50 1 0 1 0 0 0 0
...................................................................................................CCTGAACTAGGGGCCTGGAGT............................................................ 21 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................GCTGAACTAGGGGTCTGGAG............................................................. 20 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGGATA............................................................ 21 2 2 0.50 1 1 0 0 0 0 0
.............................................................GCTGACTCCTAGTCCAG...................................................................................................... 17 0 2 0.50 1 1 0 0 0 0 0
..................................................................................................TCCTGAACTAGGGGTCTGGAGT............................................................ 22 2 2 0.50 1 1 0 0 0 0 0
.............................................................GCTTACTCCTAGTCCAGTGCT.................................................................................................. 21 1 2 0.50 1 0 1 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGCTAT................................................................................................ 23 2 8 0.38 3 1 1 0 1 0 0
.............................................................GCTGACTCCTAGTCCAGGGCT.................................................................................................. 21 1 3 0.33 1 0 0 1 0 0 0
...................................................................................................CCTGGACTAGGGGTCTGGAG............................................................. 20 1 3 0.33 1 1 0 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGCGCTA................................................................................................. 22 2 3 0.33 1 0 1 0 0 0 0
.............................................................GCTTACTCCTAGTCCAGTGCTA................................................................................................. 22 2 3 0.33 1 0 1 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGGGC................................................................................................... 20 1 3 0.33 1 1 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGCCTGGAGA............................................................ 21 2 3 0.33 1 1 0 0 0 0 0
...................................................................................................CCTGAACTTGGGGTCTGGAG............................................................. 20 1 3 0.33 1 0 1 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGCA.................................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0
...................................................................................................CCTGAACTAGGGTTCTGGAGA............................................................ 21 2 3 0.33 1 0 1 0 0 0 0
...................................................................................................ACTGAACTAGGGGTCTGGAGT............................................................ 21 2 3 0.33 1 1 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGGAAT............................................................ 21 2 3 0.33 1 1 0 0 0 0 0
..................................................................................................CCCTGAATTAGGGGTCTGGAGA............................................................ 22 2 3 0.33 1 1 0 0 0 0 0
.............................................................GCTGACTTCTAGTCCAGTGCT.................................................................................................. 21 1 3 0.33 1 0 1 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGCG.................................................................................................. 21 1 3 0.33 1 0 0 0 1 0 0
.............................................................GCTGACTCCTAGTCCAGTGCTAAG............................................................................................... 24 3 3 0.33 1 0 0 0 1 0 0
...................................................................................................CCTGAACTAGGGGTCTGGATAT........................................................... 22 3 7 0.29 2 2 0 0 0 0 0
..................................................................................................CCCTGACCTAGGGGTCTGGAGT............................................................ 22 2 7 0.29 2 2 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGAAA............................................................. 20 2 4 0.25 1 1 0 0 0 0 0
.............................................................GCTGACTTCTAGTCCAGTGCTA................................................................................................. 22 2 4 0.25 1 1 0 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGGGCTA................................................................................................. 22 2 4 0.25 1 0 0 0 1 0 0
.............................................................GCTGACTCCTAGCCCAGTGCT.................................................................................................. 21 1 4 0.25 1 1 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGGCTGGAGT............................................................ 21 2 4 0.25 1 1 0 0 0 0 0
....................................................................................................CTGAGCTAGGGGTCTGGAG............................................................. 19 1 4 0.25 1 0 0 1 0 0 0
..................................................................................................CCCTGAGCTAGGGGTCTGG............................................................... 19 1 4 0.25 1 0 0 0 1 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGCA............................................................. 21 2 4 0.25 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTGGGGGTCTGGAGA............................................................ 22 2 9 0.22 2 0 2 0 0 0 0
..................................................................................................CCCTGAGCTAGGGGTCTGGAGA............................................................ 22 2 5 0.20 1 1 0 0 0 0 0
..................................................................................................CCCTGAACTAGGGGTCTGGAAAA........................................................... 23 3 5 0.20 1 1 0 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGCTGAA............................................................................................... 24 3 6 0.17 1 0 1 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGTGCTC................................................................................................. 22 1 6 0.17 1 1 0 0 0 0 0
...................................................................................................CCTGAACCAGGGGTCTGGAGT............................................................ 21 2 6 0.17 1 1 0 0 0 0 0
...................................................................................................CCTGAACTAGGGGTCTGGAGATT.......................................................... 23 3 7 0.14 1 0 0 0 0 1 0
...................................................................................................CCTGAACTAGGGGTCTGGAGAAT.......................................................... 23 3 8 0.13 1 0 1 0 0 0 0
....................................................................................................CTGAGCTAGGGGTCTGGA.............................................................. 18 1 8 0.13 1 0 0 1 0 0 0
...................................................................................................CCTGACCTAGGGGTCTGGAGT............................................................ 21 2 9 0.11 1 1 0 0 0 0 0
...................................................................................................CCTGAGCTAGGGGTCTGGAA............................................................. 20 2 10 0.10 1 0 0 1 0 0 0
...................................................................................................CCTGAGCTAGGGGTCTGGAGA............................................................ 21 2 10 0.10 1 0 0 1 0 0 0
..................................................................................................CCCTGAGCTAGGGGTCTGGATA............................................................ 22 3 12 0.08 1 0 0 1 0 0 0
...................................................................................................CCTGAGCTAGGGGTCTGG............................................................... 18 1 16 0.06 1 0 0 1 0 0 0
..................................................................................TGTGATGGCTGGTGGGT................................................................................. 17 1 20 0.05 1 1 0 0 0 0 0
.............................................................GCTGACTCCTAGTCCAGGGCTCAT............................................................................................... 24 3 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

AAATACGAAGGAGGTTAGCTTTATCTTGTAAGTAATGCTTCTCTGGGGGTTTGGGTggtGtgGtgTGtGGtTgtGGTgtgGtACACTACCGACCACCCGGGACTTGATCCCCAGACCTCCGGACCCAAACGTAAAGCGGTCGGAGTCCGGGTCGAGTACGAGGTGTTCCGTCCTCAACTG

**********************************************..(((((((((((((...((((((((((.(((.((((((........)))))).))).))))))))))...)))))))))))))....**********************************************
Read size # Mismatch Hit Count Total Norm Total SRR066810

testes
SRR066809

ovary
..........................................................AGACGACTGAGGTTCAGGTCA..................................................................................................... 21 1 4 0.75 3 2 1
..........................................................AGAAGACTGAGGATCAGGTCA..................................................................................................... 21 1 12 0.08 1 0 1

Generated: 09/01/2015 at 11:40 AM