ID:

ssc-mir-340-2

 Coordinate:

chr2:80137492-80137575 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.0 -35.5 -35.5
mature

  1. ssc-mir-340-1  chr2:80118861-80118882 +
  2. ssc-mir-340-2  chr2:80137502-80137523 +
star

  1. ssc-mir-340-1  chr2:80118903-80118925 +
  2. ssc-mir-340-2  chr2:80137544-80137566 +

Sense Strand Reads

GCAGCTTGAGTCTTCAAGAGGGAGCCTCAGAACTGATTTCTAAAACTGTACCTggtgtgattataaagcaatgagactgattgtcatatgtCGTTTGTGGGATCCGTCTCAGTTACTTTATAGCCATACCTGGTATCTTATACTGCACATCATTGCCTGTTGAACAACATTTTAAAAGCACAAA

*********************************************..(((((.((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).)))))....******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1274763

ovary		 SRR1274764

testes		 SRR139075

testes		 SRR066809

ovary		 SRR066810

testes		 SRR139076

testes
............................................................TTATAAAGCAATGAGACTGATT...................................................................................................... 22 0 2 391.50 783 338 219 100 67 42 17
............................................................TTATAAAGCAATGAGACTGAT....................................................................................................... 21 0 2 98.00 196 59 50 40 28 15 4
............................................................TTATAAAGCAATGAGACTGA........................................................................................................ 20 0 2 37.00 74 16 11 15 18 12 2
......................................................................................................TCCGTCTCAGTTACTTTATAGCC........................................................... 23 0 2 23.00 46 1 4 0 25 16 0
............................................................TTATAAAGCAATGAGACT.......................................................................................................... 18 0 2 12.00 24 1 1 19 1 1 1
......................................................................................................TCCGTCTCAGTTACTTTATAGC............................................................ 22 0 2 8.00 16 1 2 0 10 3 0
............................................................TTATAAAGCAATGAGACTGATA...................................................................................................... 22 1 2 7.00 14 5 0 5 3 0 1
..................................................................................GTCATATGTCGTTTGTGGGA.................................................................................. 20 0 2 6.00 12 0 0 0 7 5 0
............................................................TTATAAAGCAATGAGACTG......................................................................................................... 19 0 2 2.50 5 0 0 5 0 0 0
.............................................................TATAAAGCAATGAGACTGATT...................................................................................................... 21 0 2 2.00 4 0 0 2 2 0 0
............................................................TTATAAAGCAATGAGA............................................................................................................ 16 0 13 1.62 21 0 0 16 1 0 4
........................................................................................................CGTCTCAGTTACTTTATAGCCT.......................................................... 22 1 2 1.50 3 1 2 0 0 0 0
..................................................................................GTCATATGTCGTTTGTG..................................................................................... 17 0 2 1.50 3 0 0 3 0 0 0
............................................................TTATAAAGCAATGATACTGATT...................................................................................................... 22 1 2 1.50 3 0 0 3 0 0 0
............................................................TTATAAAGCAATGAGACTGATTT..................................................................................................... 23 1 3 1.33 4 3 0 1 0 0 0
............................................................TTATAAAGCAATGAGATTGATT...................................................................................................... 22 1 2 1.00 2 0 1 1 0 0 0
.......................................................................................................CCGTCTCAGTTACTTTATAGCCT.......................................................... 23 1 2 1.00 2 0 1 0 1 0 0
.......................................................................................................CCGTCTCAGTTACTTTATAGCC........................................................... 22 0 2 1.00 2 1 0 0 1 0 0
............................................................TTATAAAGCAATGAGACTGATTA..................................................................................................... 23 1 2 1.00 2 1 0 1 0 0 0
..................................................................................GTCATATGTCGTTTGT...................................................................................... 16 0 2 1.00 2 0 0 2 0 0 0
............................................................TTATAAAGCAATGAGACTGATTAGA................................................................................................... 25 3 2 1.00 2 0 0 0 1 1 0
............................................................TTATAAAGCAATGAGAC........................................................................................................... 17 0 5 0.80 4 0 0 3 0 0 1
............................................................TTATAAAGCAATGACACTGAT....................................................................................................... 21 1 3 0.67 2 0 0 2 0 0 0
............................................................TTATAAAGCAATAAGACTGATT...................................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0
.............................................................TATAAAGCAATGAGACTGAT....................................................................................................... 20 0 2 0.50 1 0 0 1 0 0 0
............................................................TTATAAAGCAATTAGACTGATT...................................................................................................... 22 1 2 0.50 1 0 0 1 0 0 0
..................................................................................GTCATATGTCGTTTGTGGGATCCGTCTCAGTTACTTTATAGCC........................................................... 43 0 2 0.50 1 1 0 0 0 0 0
............................................................TTATAAAGCAATGAAACTGAT....................................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0
............................................................TTATAAAGCAATGAGACTTATT...................................................................................................... 22 1 2 0.50 1 0 0 1 0 0 0
............................................................TTATAAAGCAATGAGACTGATG...................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
......................................................................................................TCCGTCTCAGTTACTTTACAGCC........................................................... 23 1 2 0.50 1 0 0 0 1 0 0
...........................................................ATTATAAAGCAATGAGACTGAT....................................................................................................... 22 0 2 0.50 1 0 0 0 1 0 0
............................................................TTATAAAGCAATGAGACTGT........................................................................................................ 20 1 2 0.50 1 0 0 0 0 0 1
............................................................TTATAAAGCAACGAGACTGA........................................................................................................ 20 1 2 0.50 1 0 0 0 1 0 0
......................................................................................................TCCGTCTCAGTTACTTTATAGCA........................................................... 23 1 2 0.50 1 0 1 0 0 0 0
............................................................TTATAAAGCAATGAGACTGATTAT.................................................................................................... 24 1 2 0.50 1 0 0 0 1 0 0
......................................................................................................TCCGTCTCAGTTACTTTATAGCCT.......................................................... 24 1 2 0.50 1 0 1 0 0 0 0
............................................................TTATAAAGCAATGGGACTGATT...................................................................................................... 22 1 2 0.50 1 0 0 0 0 1 0
............................................................TTATAAAGCAATGAGACTGATTAAC................................................................................................... 25 2 2 0.50 1 0 0 0 1 0 0
............................................................TTATAAAGCAATGATACTGAT....................................................................................................... 21 1 2 0.50 1 0 0 0 0 0 1
............................................................TTACAAAGCAATGAGACTGATT...................................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
.............................................................................................................................ATACCTGGTATCTTATACTGCACATCATTGCCTGTTGAACAAAAAA............. 46 3 2 0.50 1 1 0 0 0 0 0
............................................................TTATAAAGCAATGAGACTGATAG..................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
............................................................TTATAAATCAATGAGACTGAT....................................................................................................... 21 1 4 0.50 2 0 0 2 0 0 0
......................................................................................................TCCGTCTCAGTTACTTTATAG............................................................. 21 0 2 0.50 1 0 0 0 1 0 0
............................................................TTATAAAGCAATGAGACTGCTT...................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
.................................................................................TGTCATATGTCGTTTGTGGGATT................................................................................ 23 1 2 0.50 1 0 0 0 0 1 0
............................................................TTATAAAGCAATGAGACTGAA....................................................................................................... 21 1 8 0.38 3 0 0 2 1 0 0
............................................................CTATAAAGCAATGAGACTGATT...................................................................................................... 22 1 3 0.33 1 0 0 1 0 0 0
............................................................TTATAAAGCAATGAGACTGACT...................................................................................................... 22 1 3 0.33 1 0 1 0 0 0 0
............................................................GTATAAAGCAATGAGACTGATT...................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0
............................................................TTATAAAGCAATGAGACTGAAT...................................................................................................... 22 1 6 0.33 2 1 1 0 0 0 0
............................................................TTATAAAGCAATGAGACCGATT...................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0
.....................................................................................................CTCCGTCTCAGTTGCTTTATAGCC........................................................... 24 2 3 0.33 1 0 0 0 1 0 0
..................................................................................GTCATATGTCGTTTGTGGGAAAA............................................................................... 23 3 4 0.25 1 0 0 0 1 0 0
............................................................TTATAAAGTAATGAGACTGAT....................................................................................................... 21 1 6 0.17 1 1 0 0 0 0 0
............................................................TTATAAAGAAATGAGACTGA........................................................................................................ 20 1 9 0.11 1 1 0 0 0 0 0
............................................................TTATAAAGCAATGAGACTGAGA...................................................................................................... 22 2 10 0.10 1 0 0 0 1 0 0
............................................................TTATAAAGCAATGAGACTGATGAG.................................................................................................... 24 3 11 0.09 1 0 0 1 0 0 0
............................................................TTATAAAGCAATGCGAC........................................................................................................... 17 1 16 0.06 1 0 0 1 0 0 0
............................................................TTATAAAGCAATGAGACTGATAAA.................................................................................................... 24 3 19 0.05 1 0 1 0 0 0 0
.............................................................TATAAAGCAATGAGA............................................................................................................ 15 0 20 0.05 1 0 0 1 0 0 0
............................................................TTATAAAGCAATGAGACTCACG...................................................................................................... 22 3 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

CGTCGAACTCAGAAGTTCTCCCTCGGAGTCTTGACTAAAGATTTTGACATGGAggtgtgTttTtTTTgGTTtgTgTGtgTttgtGTtTtgtGCAAACACCCTAGGCAGAGTCAATGAAATATCGGTATGGACCATAGAATATGACGTGTAGTAACGGACAACTTGTTGTAAAATTTTCGTGTTT

********************************************..(((((.((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).)))))....********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:34 AM