ID:

ssc-mir-340-1

 Coordinate:

chr2:80118849-80118928 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.0 -35.5 -35.5
mature

  1. ssc-mir-340-1  chr2:80118861-80118882 +
  2. ssc-mir-340-2  chr2:80137502-80137523 +
star

  1. ssc-mir-340-1  chr2:80118903-80118925 +
  2. ssc-mir-340-2  chr2:80137544-80137566 +

Sense Strand Reads

CCGCAGCTTGAGTCTTCAAGAGGGAGCCTCAGAACTGATTTCTAAAACTGTACCTggtgtgattataaagcaatgagactgattgtcatatgtCGTTTGTGGGATCCGTCTCAGTTACTTTATAGCCATACCTGGTATCTTATACTGCACATCATTGCCTGTTGAACAACATTTTAAAAG

***********************************************..(((((.((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).)))))....************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1274763

ovary		 SRR1274764

testes		 SRR139075

testes		 SRR066809

ovary		 SRR066810

testes		 SRR139076

testes
..............................................................TTATAAAGCAATGAGACTGATT................................................................................................ 22 0 2 391.50 783 338 219 100 67 42 17
..............................................................TTATAAAGCAATGAGACTGAT................................................................................................. 21 0 2 98.00 196 59 50 40 28 15 4
..............................................................TTATAAAGCAATGAGACTGA.................................................................................................. 20 0 2 37.00 74 16 11 15 18 12 2
........................................................................................................TCCGTCTCAGTTACTTTATAGCC..................................................... 23 0 2 23.00 46 1 4 0 25 16 0
..............................................................TTATAAAGCAATGAGACT.................................................................................................... 18 0 2 12.00 24 1 1 19 1 1 1
........................................................................................................TCCGTCTCAGTTACTTTATAGC...................................................... 22 0 2 8.00 16 1 2 0 10 3 0
..............................................................TTATAAAGCAATGAGACTGATA................................................................................................ 22 1 2 7.00 14 5 0 5 3 0 1
....................................................................................GTCATATGTCGTTTGTGGGA............................................................................ 20 0 2 6.00 12 0 0 0 7 5 0
..............................................................TTATAAAGCAATGAGACTG................................................................................................... 19 0 2 2.50 5 0 0 5 0 0 0
...............................................................TATAAAGCAATGAGACTGATT................................................................................................ 21 0 2 2.00 4 0 0 2 2 0 0
..............................................................TTATAAAGCAATGAGA...................................................................................................... 16 0 13 1.62 21 0 0 16 1 0 4
..........................................................................................................CGTCTCAGTTACTTTATAGCCT.................................................... 22 1 2 1.50 3 1 2 0 0 0 0
..............................................................TTATAAAGCAATGATACTGATT................................................................................................ 22 1 2 1.50 3 0 0 3 0 0 0
....................................................................................GTCATATGTCGTTTGTG............................................................................... 17 0 2 1.50 3 0 0 3 0 0 0
..............................................................TTATAAAGCAATGAGACTGATTT............................................................................................... 23 1 3 1.33 4 3 0 1 0 0 0
..............................................................TTATAAAGCAATGAGACTGATTA............................................................................................... 23 1 2 1.00 2 1 0 1 0 0 0
.........................................................................................................CCGTCTCAGTTACTTTATAGCCT.................................................... 23 1 2 1.00 2 0 1 0 1 0 0
..............................................................TTATAAAGCAATGAGATTGATT................................................................................................ 22 1 2 1.00 2 0 1 1 0 0 0
.........................................................................................................CCGTCTCAGTTACTTTATAGCC..................................................... 22 0 2 1.00 2 1 0 0 1 0 0
....................................................................................GTCATATGTCGTTTGT................................................................................ 16 0 2 1.00 2 0 0 2 0 0 0
..............................................................TTATAAAGCAATGAGACTGATTAGA............................................................................................. 25 3 2 1.00 2 0 0 0 1 1 0
..............................................................TTATAAAGCAATGAGAC..................................................................................................... 17 0 5 0.80 4 0 0 3 0 0 1
..............................................................TTATAAAGCAATGACACTGAT................................................................................................. 21 1 3 0.67 2 0 0 2 0 0 0
..............................................................TTATAAAGCAATGATACTGAT................................................................................................. 21 1 2 0.50 1 0 0 0 0 0 1
...................................................................................TGTCATATGTCGTTTGTGGGATT.......................................................................... 23 1 2 0.50 1 0 0 0 0 1 0
..............................................................TTATAAAGCAATGAGACTGATTAAC............................................................................................. 25 2 2 0.50 1 0 0 0 1 0 0
.............................................................ATTATAAAGCAATGAGACTGAT................................................................................................. 22 0 2 0.50 1 0 0 0 1 0 0
..............................................................TTATAAAGCAATGAGACTGCTT................................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0
..............................................................TTATAAAGCAATGGGACTGATT................................................................................................ 22 1 2 0.50 1 0 0 0 0 1 0
........................................................................................................TCCGTCTCAGTTACTTTATAG....................................................... 21 0 2 0.50 1 0 0 0 1 0 0
..............................................................TTATAAAGCAATGAGACTGT.................................................................................................. 20 1 2 0.50 1 0 0 0 0 0 1
....................................................................................GTCATATGTCGTTTGTGGGATCCGTCTCAGTTACTTTATAGCC..................................................... 43 0 2 0.50 1 1 0 0 0 0 0
..............................................................TTATAAAGCAATGAGACTGATTAT.............................................................................................. 24 1 2 0.50 1 0 0 0 1 0 0
...............................................................................................................................ATACCTGGTATCTTATACTGCACATCATTGCCTGTTGAACAAAAAA....... 46 3 2 0.50 1 1 0 0 0 0 0
..............................................................TTACAAAGCAATGAGACTGATT................................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0
..............................................................TTATAAAGCAATGAGACTGATAG............................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
........................................................................................................TCCGTCTCAGTTACTTTACAGCC..................................................... 23 1 2 0.50 1 0 0 0 1 0 0
..............................................................TTATAAAGCAATGAGACTTATT................................................................................................ 22 1 2 0.50 1 0 0 1 0 0 0
..............................................................TTATAAAGCAATAAGACTGATT................................................................................................ 22 1 2 0.50 1 0 0 0 1 0 0
..............................................................TTATAAAGCAACGAGACTGA.................................................................................................. 20 1 2 0.50 1 0 0 0 1 0 0
..............................................................TTATAAAGCAATGAGACTGATG................................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0
...............................................................TATAAAGCAATGAGACTGAT................................................................................................. 20 0 2 0.50 1 0 0 1 0 0 0
..............................................................TTATAAAGCAATTAGACTGATT................................................................................................ 22 1 2 0.50 1 0 0 1 0 0 0
........................................................................................................TCCGTCTCAGTTACTTTATAGCCT.................................................... 24 1 2 0.50 1 0 1 0 0 0 0
........................................................................................................TCCGTCTCAGTTACTTTATAGCA..................................................... 23 1 2 0.50 1 0 1 0 0 0 0
..............................................................TTATAAATCAATGAGACTGAT................................................................................................. 21 1 4 0.50 2 0 0 2 0 0 0
..............................................................TTATAAAGCAATGAAACTGAT................................................................................................. 21 1 2 0.50 1 0 0 0 1 0 0
..............................................................TTATAAAGCAATGAGACTGAA................................................................................................. 21 1 8 0.38 3 0 0 2 1 0 0
..............................................................TTATAAAGCAATGAGACTGAAT................................................................................................ 22 1 6 0.33 2 1 1 0 0 0 0
.......................................................................................................CTCCGTCTCAGTTGCTTTATAGCC..................................................... 24 2 3 0.33 1 0 0 0 1 0 0
..............................................................TTATAAAGCAATGAGACCGATT................................................................................................ 22 1 3 0.33 1 1 0 0 0 0 0
..............................................................GTATAAAGCAATGAGACTGATT................................................................................................ 22 1 3 0.33 1 1 0 0 0 0 0
..............................................................CTATAAAGCAATGAGACTGATT................................................................................................ 22 1 3 0.33 1 0 0 1 0 0 0
..............................................................TTATAAAGCAATGAGACTGACT................................................................................................ 22 1 3 0.33 1 0 1 0 0 0 0
....................................................................................GTCATATGTCGTTTGTGGGAAAA......................................................................... 23 3 4 0.25 1 0 0 0 1 0 0
..............................................................TTATAAAGTAATGAGACTGAT................................................................................................. 21 1 6 0.17 1 1 0 0 0 0 0
..............................................................TTATAAAGAAATGAGACTGA.................................................................................................. 20 1 9 0.11 1 1 0 0 0 0 0
..............................................................TTATAAAGCAATGAGACTGAGA................................................................................................ 22 2 10 0.10 1 0 0 0 1 0 0
..............................................................TTATAAAGCAATGAGACTGATGAG.............................................................................................. 24 3 11 0.09 1 0 0 1 0 0 0
..............................................................TTATAAAGCAATGCGAC..................................................................................................... 17 1 16 0.06 1 0 0 1 0 0 0
..............................................................TTATAAAGCAATGAGACTGATAAA.............................................................................................. 24 3 19 0.05 1 0 1 0 0 0 0
...............................................................TATAAAGCAATGAGA...................................................................................................... 15 0 20 0.05 1 0 0 1 0 0 0
..............................................................TTATAAAGCAATGAGACTCACG................................................................................................ 22 3 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

GGCGTCGAACTCAGAAGTTCTCCCTCGGAGTCTTGACTAAAGATTTTGACATGGAggtgtgTttTtTTTgGTTtgTgTGtgTttgtGTtTtgtGCAAACACCCTAGGCAGAGTCAATGAAATATCGGTATGGACCATAGAATATGACGTGTAGTAACGGACAACTTGTTGTAAAATTTTC

**************************************..(((((.((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).)))))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:34 AM