ID:ssc-mir-339-2 |
Coordinate:chr1:181756284-181756369 - |
Confidence:Known |
Class:Unknown |
Genomic Locale:intergenic |
[View on miRBase] [View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
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| mature | star |
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TtTGTGggttGGTgTGTGgTttGTGgTggttGGGgTtggttGtTGggttGTttGtgttGGTgggTGTggTggtGGtGgTgtTGGTggttTtGttGgtTtTtTtgtttTGGgTgTGtGGGGtGtTgggGgTGTGGgTgtGgGGTttgtttgtgGtgTtGTtTgTtTGtGGtTGgtGGTTTGtggggT
***********************************....................................................................................................................*********************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR139075 testes |
SRR066809 ovary |
SRR1274763 ovary |
SRR066810 testes |
SRR139076 testes |
SRR1274764 testes |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................TCCCTGTCCTCCAGGAGCTCA......................................................................................................... | 21 | 0 | 4 | 348.00 | 1392 | 964 | 224 | 43 | 80 | 71 | 10 |
| ............................................................TCCCTGTCCTCCAGGAGCTC.......................................................................................................... | 20 | 0 | 6 | 94.00 | 564 | 134 | 74 | 260 | 30 | 1 | 65 |
| ............................................................TCCCTGTCCTCCAGGAGCTCAT........................................................................................................ | 22 | 0 | 2 | 78.50 | 157 | 115 | 17 | 8 | 6 | 11 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCAA........................................................................................................ | 22 | 1 | 5 | 16.20 | 81 | 60 | 11 | 3 | 3 | 3 | 1 |
| ............................................................TCCCTGTCCTCCAGGAGCT........................................................................................................... | 19 | 0 | 11 | 12.64 | 139 | 97 | 21 | 10 | 5 | 5 | 1 |
| ............................................................TCCCTGTCCTCCAGGAGCTCATT....................................................................................................... | 23 | 1 | 3 | 12.33 | 37 | 18 | 10 | 7 | 2 | 0 | 0 |
| ............................................................TCTCTGTCCTCCAGGAGCTCA......................................................................................................... | 21 | 1 | 10 | 7.70 | 77 | 75 | 0 | 0 | 0 | 2 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCATA....................................................................................................... | 23 | 1 | 2 | 6.00 | 12 | 8 | 1 | 1 | 1 | 1 | 0 |
| ..............................................................CCTGTCCTCCAGGAGCTCA......................................................................................................... | 19 | 0 | 5 | 5.80 | 29 | 24 | 2 | 0 | 1 | 2 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGC............................................................................................................ | 18 | 0 | 14 | 3.36 | 47 | 36 | 6 | 1 | 3 | 1 | 0 |
| ............................................................TCCCTGTCCTCCAGGAG............................................................................................................. | 17 | 0 | 17 | 2.76 | 47 | 46 | 0 | 0 | 0 | 1 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCAAG....................................................................................................... | 23 | 1 | 3 | 1.33 | 4 | 4 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TTCCTGTCCTCCAGGAGCTCA......................................................................................................... | 21 | 1 | 10 | 1.30 | 13 | 13 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................CCTGTCCTCCAGGAGCTC.......................................................................................................... | 18 | 0 | 7 | 1.29 | 9 | 6 | 1 | 2 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCCGGAGCTCA......................................................................................................... | 21 | 1 | 6 | 1.17 | 7 | 7 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCTCTGTCCTCCAGGAGCTCAT........................................................................................................ | 22 | 1 | 3 | 1.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCAAA....................................................................................................... | 23 | 2 | 20 | 0.85 | 17 | 6 | 5 | 2 | 3 | 1 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTA.......................................................................................................... | 20 | 1 | 16 | 0.69 | 11 | 6 | 2 | 1 | 2 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCGT........................................................................................................ | 22 | 1 | 3 | 0.67 | 2 | 0 | 2 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCG......................................................................................................... | 21 | 1 | 6 | 0.67 | 4 | 1 | 1 | 1 | 1 | 0 | 0 |
| ...........................................................CTCCCTGTCCTCCAGGAGCTCA......................................................................................................... | 22 | 1 | 6 | 0.50 | 3 | 0 | 3 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGCGCTCAT........................................................................................................ | 22 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCATG....................................................................................................... | 23 | 0 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................................TACCTGTCCTCCAGGAGCTCA......................................................................................................... | 21 | 1 | 4 | 0.50 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTTTCCTCCAGGAGCTCAT........................................................................................................ | 22 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCACGAGCTCAT........................................................................................................ | 22 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCATGAGCTCA......................................................................................................... | 21 | 1 | 6 | 0.50 | 3 | 3 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCATC....................................................................................................... | 23 | 1 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGGGCTCAT........................................................................................................ | 22 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCTCTGTCCTCCAGGAGCTC.......................................................................................................... | 20 | 1 | 19 | 0.47 | 9 | 9 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCAG........................................................................................................ | 22 | 1 | 7 | 0.43 | 3 | 1 | 2 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGTAGCTCA......................................................................................................... | 21 | 1 | 5 | 0.40 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCAGTCCTCCAGGAGCTCA......................................................................................................... | 21 | 1 | 5 | 0.40 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................CCTGTCCTCCAGGAGCTCAT........................................................................................................ | 20 | 0 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ............................................................TTCCTGTCCTCCAGGAGCTCAT........................................................................................................ | 22 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................CCCTGTCCTCCAGGAGCTCAT........................................................................................................ | 21 | 0 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCATTA...................................................................................................... | 24 | 2 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCATTTT..................................................................................................... | 25 | 2 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................................................ATTTCCCTGTCCTCCAGGAGCTCA......................................................................................................... | 24 | 2 | 4 | 0.25 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGTTCA......................................................................................................... | 21 | 1 | 8 | 0.25 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCAGAGT..................................................................................................... | 25 | 2 | 9 | 0.22 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ............................................................ACCCTGTCCTCCAGGAGCTCA......................................................................................................... | 21 | 1 | 9 | 0.22 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCAAGA...................................................................................................... | 24 | 2 | 5 | 0.20 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ............................................................TCGCTGTCCTCCAGGAGCTCAA........................................................................................................ | 22 | 2 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCCGGAGCTCATT....................................................................................................... | 23 | 2 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGCGCTCA......................................................................................................... | 21 | 1 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ............................................................TCCCTGTCCTGCAGGAGCTCA......................................................................................................... | 21 | 1 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TCCTGTCCTCCAGGAGCTCAT........................................................................................................ | 21 | 1 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................CCTGTCCTCCAGGAGCTCATA....................................................................................................... | 21 | 1 | 6 | 0.17 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGGGCTCA......................................................................................................... | 21 | 1 | 12 | 0.17 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTAA......................................................................................................... | 21 | 1 | 13 | 0.15 | 2 | 0 | 0 | 0 | 0 | 2 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCGA........................................................................................................ | 22 | 2 | 7 | 0.14 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTACTCCAGGAGCTC.......................................................................................................... | 20 | 1 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCACCAGGAGCTC.......................................................................................................... | 20 | 1 | 7 | 0.14 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...............................................................CTGTCCTCCAGGAGCTCA......................................................................................................... | 18 | 0 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................CTCCCTGTCCTCCAGGAGCTC.......................................................................................................... | 21 | 1 | 8 | 0.13 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................CCTGTCCTCCAGGAGCT........................................................................................................... | 17 | 0 | 16 | 0.13 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TTCCTGTCCTCCAGGAGCTC.......................................................................................................... | 20 | 1 | 16 | 0.13 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCTTGTCCTCCAGGAGCTCAT........................................................................................................ | 22 | 1 | 8 | 0.13 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCAGTCCTCCAGGAGCTC.......................................................................................................... | 20 | 1 | 8 | 0.13 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTCTCCTCCAGGAGCTC.......................................................................................................... | 20 | 1 | 8 | 0.13 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .............................................................TCCTGTCCTCCAGGAGCTCA......................................................................................................... | 20 | 1 | 17 | 0.12 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ................................................................TGTCCTCCAGGAGCTCA......................................................................................................... | 17 | 0 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................CCTGTCCTCCAGGAGCTCAA........................................................................................................ | 20 | 1 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................ATCCCTGTCCTCCAGGAGCTCA......................................................................................................... | 22 | 1 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTTCTCCAGGAGCTCA......................................................................................................... | 21 | 1 | 10 | 0.10 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCTCTGTCCTCCAGGAGCTCAA........................................................................................................ | 22 | 2 | 20 | 0.10 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGTTC.......................................................................................................... | 20 | 1 | 10 | 0.10 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCTTTTT..................................................................................................... | 25 | 3 | 10 | 0.10 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..............................................................CCTGTCCTCCAGGAGCTCATCA...................................................................................................... | 22 | 2 | 20 | 0.10 | 2 | 0 | 0 | 0 | 0 | 2 | 0 |
| ...............................................................CTGTCCTCCAGGAGCTC.......................................................................................................... | 17 | 0 | 10 | 0.10 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTTCAGGAGCTCA......................................................................................................... | 21 | 1 | 10 | 0.10 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCATAA...................................................................................................... | 24 | 2 | 11 | 0.09 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTTAT........................................................................................................ | 22 | 1 | 11 | 0.09 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCTCATAT...................................................................................................... | 24 | 2 | 11 | 0.09 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTGCTCCAGGAGCGCA......................................................................................................... | 21 | 2 | 12 | 0.08 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCGGGAGCTC.......................................................................................................... | 20 | 1 | 12 | 0.08 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCTCTGTCCTCCAGGAGCTCATT....................................................................................................... | 23 | 2 | 12 | 0.08 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTCTCCTCCAGGAGCTCAA........................................................................................................ | 22 | 2 | 14 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCACGAGCT........................................................................................................... | 19 | 1 | 15 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................CTCTGTCCTCCAGGAGCTCA......................................................................................................... | 20 | 1 | 17 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGCGCTAA......................................................................................................... | 21 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..............................................................CCTGTCCTCCAGGAGC............................................................................................................ | 16 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGTCCTCCAGGAGCA........................................................................................................... | 19 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................................TCCCTGCCCTCCAGGAGCTCA......................................................................................................... | 21 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................CTGTCCTCCAGGAGCT........................................................................................................... | 16 | 0 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
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AtACACggttCCAgACACgAttCACgAggttCCCgAtggttCtACggttCAttCtgttCCAgggACAggAggtCCtCgAgtACCAggttAtCttCgtAtAtAtgtttACCgAgACtCCCCtCtAgggCgACACCgAgtCgCCAttgtttgtgCtgAtCAtAgAtACtCCtACgtCCAAACtggggA
***********************************....................................................................................................................*********************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total |
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Generated: 09/01/2015 at 11:19 AM