ID:ssc-mir-328 |
Coordinate:chr6:25134077-25134156 - |
Confidence:Known |
Class:Unknown |
Genomic Locale:intergenic |
[View on miRBase] [View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
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|
| -53.4 | -52.9 | -52.7 |
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GGTCTTGGCCGAAGAACATAGGTGAAAAGTCCTGGGCTGTTTCGGAGCCTGGAGCGGGGGGGCAGGAGGGGCTCAGGGAGAAAGTGTGTGCCGCCCCTGGCCCTCTCTGCCCTTCCGTCCCCCGTTCCTGGACACGCTGTGCCCGGTGCTACTCACAGGGCTCCCCAACGCGGAGCAGCT
*****************************************..(((((..((.(((((((((((((.(((((.(((((.....(((.....))))))))))))).))))))))))))).))..))))).....*********************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR066809 ovary |
SRR066810 testes |
SRR139075 testes |
SRR1274763 ovary |
SRR139076 testes |
SRR1274764 testes |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGT.............................................................. | 22 | 0 | 1 | 439.00 | 439 | 212 | 173 | 34 | 14 | 5 | 1 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGTT............................................................. | 23 | 1 | 1 | 347.00 | 347 | 172 | 163 | 6 | 4 | 2 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCG............................................................... | 21 | 0 | 1 | 62.00 | 62 | 34 | 27 | 0 | 0 | 1 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGA.............................................................. | 22 | 1 | 1 | 40.00 | 40 | 17 | 6 | 8 | 6 | 3 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGTA............................................................. | 23 | 1 | 1 | 38.00 | 38 | 20 | 6 | 4 | 6 | 2 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGTTT............................................................ | 24 | 2 | 3 | 17.00 | 51 | 30 | 16 | 2 | 0 | 2 | 1 |
| .....................................TGTCTCGGAGCCTGGAGCG............................................................................................................................ | 19 | 1 | 1 | 12.00 | 12 | 9 | 3 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTC................................................................. | 19 | 0 | 1 | 10.00 | 10 | 7 | 3 | 0 | 0 | 0 | 0 |
| ........................................................GGGGGGCAGGAGGGGCTCAGGGTT.................................................................................................... | 24 | 2 | 1 | 9.00 | 9 | 4 | 5 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGTAA............................................................ | 24 | 2 | 1 | 9.00 | 9 | 7 | 1 | 1 | 0 | 0 | 0 |
| ........................................................GGGGGGCAGGAGGGGCTCAGGGT..................................................................................................... | 23 | 1 | 1 | 8.00 | 8 | 4 | 4 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGC.............................................................. | 22 | 1 | 1 | 8.00 | 8 | 6 | 1 | 0 | 1 | 0 | 0 |
| .....................................TGTTTCGGAGCCTGGAGCG............................................................................................................................ | 19 | 0 | 1 | 7.00 | 7 | 1 | 5 | 0 | 0 | 0 | 1 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCC................................................................ | 20 | 0 | 1 | 6.00 | 6 | 2 | 2 | 1 | 1 | 0 | 0 |
| ......................................GTTTCGGAGCCTGGAGCG............................................................................................................................ | 18 | 0 | 1 | 5.00 | 5 | 0 | 5 | 0 | 0 | 0 | 0 |
| .........................................TCGGAGCCTGGAGCG............................................................................................................................ | 15 | 0 | 1 | 4.00 | 4 | 4 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGAA............................................................. | 23 | 2 | 1 | 4.00 | 4 | 0 | 1 | 2 | 1 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGTTA............................................................ | 24 | 2 | 1 | 4.00 | 4 | 3 | 0 | 1 | 0 | 0 | 0 |
| ...............................................................................................CCTGGCCCTCTCTGCCCTTCCGTT............................................................. | 24 | 1 | 1 | 4.00 | 4 | 1 | 3 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGTC............................................................. | 23 | 0 | 1 | 4.00 | 4 | 2 | 2 | 0 | 0 | 0 | 0 |
| .......................................TTTCGGAGCCTGGAGCG............................................................................................................................ | 17 | 0 | 1 | 3.00 | 3 | 0 | 3 | 0 | 0 | 0 | 0 |
| ...............................................................................................CCTGGCCCTCTCTGCCCTTCCGT.............................................................. | 23 | 0 | 1 | 3.00 | 3 | 1 | 2 | 0 | 0 | 0 | 0 |
| ........................................................GGGGGGCAGGAGGGGCTCAGGG...................................................................................................... | 22 | 0 | 1 | 3.00 | 3 | 1 | 2 | 0 | 0 | 0 | 0 |
| .................................................................................................TGGCCCTCTCTGCCCTTCCGT.............................................................. | 21 | 0 | 1 | 3.00 | 3 | 1 | 1 | 0 | 1 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCTT.............................................................. | 22 | 1 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| ........................................................GGGGGGCAGGAGGGGCTCAGGGA..................................................................................................... | 23 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGTAT............................................................ | 24 | 2 | 2 | 2.00 | 4 | 0 | 2 | 2 | 0 | 0 | 0 |
| .................................................................................................TGGCCCTCTCTGCCCTTCCGTT............................................................. | 22 | 1 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| ....................................CTGTTTCGGAGCCTGGAGCG............................................................................................................................ | 20 | 0 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| ......................................GTCTCGGAGCCTGGAGCG............................................................................................................................ | 18 | 1 | 3 | 1.33 | 4 | 2 | 2 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTTTGCCCTTCCGTA............................................................. | 23 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCCGCCCTTCCGT.............................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................GGGGGGCAGGAGGGGCTCAGGGAAAA.................................................................................................. | 26 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...................................GCTGTTTCGGAGCCTGGAGCG............................................................................................................................ | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................GGCCCTCTCTGCCCTTCCG............................................................... | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................................................GGGGGCAGGAGGGGCTCAGGGT..................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTTCGTT............................................................. | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................GGGGGGCAGGAGGGGCTCAGG....................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTAGCCCTCTCTGCCCTTCCGA.............................................................. | 22 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ................................................................................................CTGGCCCCCTCTGCCCTTCCGT.............................................................. | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....................................CTGTCTCGGAGCCTGGAGCG............................................................................................................................ | 20 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCTCTTCCGT.............................................................. | 22 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .....................................TGTTTCGGAGCCTGGAGCGG........................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTTTCTGCCCTTCCGT.............................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGTTAA........................................................... | 25 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .................................GGGCTGTCTCGGAGCCTGGAGCG............................................................................................................................ | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................CCTGGCCCTCTCTGCCCTTCCTTT............................................................. | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGCA............................................................. | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................GGGGGGGCAGGAGGGGCTCAGGGTT.................................................................................................... | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCTTT............................................................. | 23 | 2 | 3 | 1.00 | 3 | 2 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CCGGCCCTCTCTGCCCTTCCGTT............................................................. | 23 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTT.................................................................. | 18 | 0 | 4 | 0.75 | 3 | 1 | 1 | 1 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGCT............................................................. | 23 | 2 | 7 | 0.57 | 4 | 2 | 2 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGTGT............................................................ | 24 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTCCCCTTCCGT.............................................................. | 22 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................ATTCTGGCCCTCTCTGCCCTTCCGT.............................................................. | 25 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCTGT.............................................................. | 22 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCA................................................................ | 20 | 1 | 4 | 0.50 | 2 | 0 | 2 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGTGA............................................................ | 24 | 2 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGTTTC........................................................... | 25 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................ACTGGCCCTCTCTGCCCTTCCGTT............................................................. | 24 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................TGGCCCTCTCTGCCCTTCCGTTT............................................................ | 23 | 2 | 4 | 0.50 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGAT............................................................. | 23 | 2 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGAG............................................................. | 23 | 2 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGTAAT........................................................... | 25 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCTTA............................................................. | 23 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCT............................................................... | 21 | 1 | 5 | 0.40 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGAAT............................................................ | 24 | 3 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................GGGGGGCAGGAGGGGCTCAGGTT..................................................................................................... | 23 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCTGTT............................................................. | 23 | 2 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGAGA............................................................ | 24 | 3 | 7 | 0.29 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| ........................................CTCGGAGCCTGGAGCG............................................................................................................................ | 16 | 1 | 20 | 0.25 | 5 | 3 | 2 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGAAA............................................................ | 24 | 3 | 4 | 0.25 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCTTTCCGTTA............................................................ | 24 | 3 | 4 | 0.25 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCTTT.............................................................. | 22 | 2 | 13 | 0.23 | 3 | 1 | 2 | 0 | 0 | 0 | 0 |
| .......................................TCTCGGAGCCTGGAGCG............................................................................................................................ | 17 | 1 | 9 | 0.22 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGTTTT........................................................... | 25 | 3 | 9 | 0.22 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| .....................................TGTCTCGGAGCCTGGAGC............................................................................................................................. | 18 | 1 | 5 | 0.20 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGAAG............................................................ | 24 | 3 | 5 | 0.20 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................GGGGTGCAGGAGGGGCTCAGGGT..................................................................................................... | 23 | 2 | 5 | 0.20 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTCCGATT............................................................ | 24 | 3 | 11 | 0.18 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCTCTCTCTGCCCTTCC................................................................ | 20 | 1 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................CGGCCCTCTCTGCCCTTCCGTAA............................................................ | 23 | 3 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCC.................................................................... | 16 | 0 | 14 | 0.14 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| ........................................................GGGGGGCAGGAGGGGCTCAGGCC..................................................................................................... | 23 | 2 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCCCCCGT.............................................................. | 22 | 2 | 8 | 0.13 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCTTA................................................................. | 19 | 1 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CTGGCCCTCTCTGCCCT................................................................... | 17 | 0 | 9 | 0.11 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
|
CCAGAACCGGCTTCTTGTATCCACTTTTCAGGACCCGACAAAGCCTCGGACCTCGCCCCCCCGTCCTCCCCGAGTCCCTCTTTCACACACGGCGGGGACCGGGAGAGACGGGAAGGCAGGGGGCAAGGACCTGTGCGACACGGGCCACGATGAGTGTCCCGAGGGGTTGCGCCTCGTCGA
***********************************************..(((((..((.(((((((((((((.(((((.(((((.....(((.....))))))))))))).))))))))))))).))..))))).....***************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR066809 ovary |
SRR066810 testes |
SRR1274764 testes |
|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................................TCCCGAGGGGTTGCGC........ | 16 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 |
| ...................................................................................................CGGGAGAGACGGGAAGGCA.............................................................. | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .....................................................................................................GGAGAGACGGGAAGGCA.............................................................. | 17 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ..............................................................................................GGGACCGGGAGAGACGGGAAGGC............................................................... | 23 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| ...............................................................................................GGACCGGGAGAGACGGGAAGGCA.............................................................. | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...................................................................................................CAGGATAGACGGGAAGGCA.............................................................. | 19 | 2 | 15 | 0.07 | 1 | 0 | 1 | 0 |
Generated: 09/01/2015 at 11:38 AM