ID:

ssc-mir-325

 Coordinate:

chrX:69436727-69436820 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.7 -40.6 -40.4
mature

  1. ssc-mir-325  chrX:69436776-69436796 +
  2. ssc-mir-325  chrX:69673032-69673052 -
star

  1. ssc-mir-325  chrX:69436738-69436759 +
  2. ssc-mir-325  chrX:69673069-69673090 -

Sense Strand Reads

GTGATAGATTACAGGGTTCCAAGTGTTGTGGATTCTAGcagagccgctacagtgcttggttcctagtaggtgttcagtaagtgtttgtGACATAATTcgtttattgagcacctcctatcaatcaagcactgtgctaggttctgggaccacacagataagatagacaaggtcctacttttcgaggtgctcatgtt

**********************************************.((((((((((((((..(((.((((((((((((((((.((((...))))..)))))))))))))))).)))..))))))))))))))..*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes
...................................................................................................TTTATTGAGCACCTCCTATCA.......................................................................... 21 0 2 27.50 55 31 24 0
...................................................................................................TTTATTGAGCACCTCCTATC........................................................................... 20 0 2 21.00 42 26 16 0
...................................................................................................TTTATTGAGCACCTCCTATCAA......................................................................... 22 0 2 4.00 8 4 4 0
.............................................................CCTAGTAGGTGCTCAGTAAGTGT.............................................................................................................. 23 1 8 0.88 7 6 1 0
.....................................................................................................TATTGAGCACCTCCTATCA.......................................................................... 19 0 2 0.50 1 0 1 0
.........................................................................................................................TCAAGCACTGTGCTAGGCTCTGGGGCCACATA......................................... 32 3 2 0.50 1 1 0 0
.............................................................CCTAGTAGGTGTTCAGTAAGTG............................................................................................................... 22 0 2 0.50 1 0 0 1
...................................................................................................TTTATTGAGCACCTCCTATCAAG........................................................................ 23 1 2 0.50 1 1 0 0
...................................................................................................TTTATTGAGCACCTCCTATCAAGTAG..................................................................... 26 3 2 0.50 1 1 0 0
...................................................................................................TTTATTGAGCACCTCCTAT............................................................................ 19 0 19 0.42 8 5 3 0
.............................................................CCTAGTAGGTGCTCAGTAAGTG............................................................................................................... 22 1 17 0.41 7 6 1 0
...................................................................................................TTTATTGAGCACCTCCTATCAT......................................................................... 22 1 3 0.33 1 1 0 0
...................................................................................................TTTATTGAGCACCTCCTATCG.......................................................................... 21 1 5 0.20 1 0 1 0
..................................................................................................GTTTATTGAGCACCTCCTATCT.......................................................................... 22 1 6 0.17 1 1 0 0
.............................................................CCTAGTAGGTGCTCAGTAAGT................................................................................................................ 21 1 20 0.05 1 1 0 0
........................................................................................................TGAGCACCGCCTATCGA......................................................................... 17 2 20 0.05 1 1 0 0

Anti-sense strand reads

CACTATCTAATGTCCCAAGGTTCACAACACCTAAGATCGTgTgGGgGtTGTgtgGttggttGGtTgtTggtgttGTgtTTgtgtttgtCTGTATTAAGgtttTttgTgGTGGtGGtTtGTTtGTTgGTGtgtgGtTggttGtgggTGGTGTGTgTtTTgTtTgTGTTggtGGtTGttttGgTggtgGtGTtgtt

***********************************************************.((((((((((((((..(((.((((((((((((((((.((((...))))..)))))))))))))))).)))..))))))))))))))..********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:45 AM