ID:

ssc-mir-32

 Coordinate:

chr1:280645137-280645206 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.9 -41.9 -41.9

Sense Strand Reads

TGTTTGCATCACACCCTTCTTCCCCGATGCTCCATCCTGCTTGCTCTGGTGGAGATATTGCACATTACTAAGTTGCATGTTGTCACGGCCTCAGTGCAATTTAGTGTGTGTGATATTTTCACATGAGTGCATGCACACGGGTATGGCTCTTGCTTGTGGGATTACAGCTT

****************************************..((((..(((((((((((((((((.((((((((((((((((...))))....)))))))))))))))))))))))))))))..))))....************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR1274764

testes		 SRR139076

testes		 SRR1274763

ovary
.......................................................TATTGCACATTACTAAGTTGC.............................................................................................. 21 0 1 171.00 171 90 57 12 6 2 4
.......................................................TATTGCACATTACTAAGTTGCA............................................................................................. 22 0 1 144.00 144 84 50 6 1 3 0
.......................................................TATTGCACATTACTAAGTTG............................................................................................... 20 0 1 39.00 39 7 5 10 13 2 2
................................................................................................CAATTTAGTGTGTGTGATATT..................................................... 21 0 1 24.00 24 9 5 2 5 0 3
......................................................ATATTGCACATTACTAAGTTG............................................................................................... 21 0 1 10.00 10 1 4 5 0 0 0
.......................................................TATTGCACATTACTAAGTT................................................................................................ 19 0 1 9.00 9 2 2 5 0 0 0
.......................................................TATTGCACATTACTAAGTTGCAT............................................................................................ 23 0 1 8.00 8 0 0 2 0 6 0
........................................................ATTGCACATTACTAAGTTGC.............................................................................................. 20 0 1 5.00 5 4 0 0 0 1 0
......................................................ATATTGCACATTACTAAGTTGC.............................................................................................. 22 0 1 4.00 4 1 3 0 0 0 0
.......................................................TATTGCACATTACTAAGTTGA.............................................................................................. 21 1 1 3.00 3 2 1 0 0 0 0
....................................CTGCTTGCTCTGGTGGAGA................................................................................................................... 19 0 1 3.00 3 1 1 0 0 0 1
.......................................................TATTGCACATTACTAAGTTGCAA............................................................................................ 23 1 1 3.00 3 0 0 1 0 2 0
......................................................ATATTGCACATTACTAAGTTGCA............................................................................................. 23 0 1 2.00 2 1 1 0 0 0 0
........................................................ATTGCACATTACTAAGTTGCA............................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0
...................................CCTGCTTGCTCTGGTGGAGA................................................................................................................... 20 0 1 2.00 2 0 0 1 0 0 1
.......................................................TATTGCGCATTACTAAGTTG............................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.....................................................CATATTGCACATTACTAAGTTGCA............................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
.......................................................TATTGCGCATTACTAAGTTGCA............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................TATTGTACATTACTAAGTTG............................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
................................................................................................CAATTTAGTGTGTGTGATA....................................................... 19 0 1 1.00 1 0 0 0 1 0 0
....................................................CCATATTGCACATTACTAAGTTGC.............................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0
......................................................ATATTGCACATTACTAAGGTG............................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.............................................................................TGTTGTCACGGCCTCAGTG.......................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.......................................................TATTGCACATTACCAAGTTG............................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.......................................................TATTGCACATTACTAAGTTGCATG........................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
....................................TTGCTTGCTCTGGTGGAGA................................................................................................................... 19 1 7 1.00 7 4 3 0 0 0 0
............................................................CACATTACTAAGTTGCA............................................................................................. 17 0 1 1.00 1 0 1 0 0 0 0
.......................................................TATTGCACATTACTAACTTGCA............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................CAATTTAGTGTGTGTGATAT...................................................... 20 0 1 1.00 1 0 0 0 0 1 0
.................................................................................................AATTTAGTGTGTGTGATATT..................................................... 20 0 1 1.00 1 0 0 1 0 0 0
.....................................TGCTTGCTCTGGTGGAGA................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
.......................................................TATTGCACATTACTAAGT................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0
.......................................................TATTGCACATTACTAAG.................................................................................................. 17 0 2 0.50 1 0 0 0 1 0 0
.......................................................TATTGCACACTACTAAGTTGA.............................................................................................. 21 2 3 0.33 1 1 0 0 0 0 0
.......................................................TATTGCACATTATTAAGTTG............................................................................................... 20 1 3 0.33 1 0 0 0 1 0 0
................................................................................................CAATTTAGTGTGTGTGATACC..................................................... 21 2 3 0.33 1 0 1 0 0 0 0
.......................................................TATTACACATTACTAAGTTG............................................................................................... 20 1 5 0.20 1 0 1 0 0 0 0
.......................................................TATTGCACATTACTGAGTTGA.............................................................................................. 21 2 12 0.08 1 0 1 0 0 0 0

Anti-sense strand reads

ACAAACGTAGTGTGGGAAGAAGGGGCTACGAGGTAGGACGAACGAGACCACCTCTATAACGTGTAATGATTCAACGTACAACAGTGCCGGAGTCACGTTAAATCACACACACTATAAAAGTGTACTCACGTACGTGTGCCCATACCGAGAACGAACACCCTAATGTCGAA

**************************************..((((..(((((((((((((((((.((((((((((((((((...))))....)))))))))))))))))))))))))))))..))))....**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:20 AM