ID:

ssc-mir-30c-1

Coordinate:

chr6:157473595-157473674 -

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.3 -34.1 -34.1
mature

  1. ssc-mir-30c-2  chr1:57721735-57721758 -
  2. ssc-mir-30c-1  chr6:157473642-157473665 -
  3. GL895276-2:226526-226549 +
star

Sense Strand Reads

GTCAGTGGTCTGGGGCCCACCCTCCCTGGACCCTCGGGCCGTAACCATGCCGTAGTGCGTGTAAACATCCTACACTCTCAGCTGTGAGCTCGAGGTGGCTGGGAGAGGGTTGTTTACTCCTTCTGCCATGGAAAACGCCAGCTGAAGAAGGAACAGTCTCTTCACCCAGCACATGGGCCG

********************************************(((((..((((.....(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).....)))))))))....*********************************************
Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary
SRR066810

testes
SRR139075

testes
SRR1274763

ovary
SRR1274764

testes
SRR139076

testes
...........................................................TGTAAACATCCTACACTCTCAGCT................................................................................................. 24 0 3 4383.67 13151 6457 4173 875 1131 337 178
...........................................................TGTAAACATCCTACACTCTCAGC.................................................................................................. 23 0 3 2021.33 6064 3373 1697 348 444 130 72
...........................................................TGTAAACATCCTACACTCTCA.................................................................................................... 21 0 3 315.00 945 484 291 92 37 23 18
...........................................................TGTAAACATCCTACACTCTCAG................................................................................................... 22 0 3 221.67 665 266 176 143 31 20 29
..................................................................................................CTGGGAGAGGGTTGTTTACTCC............................................................ 22 0 1 135.00 135 18 11 33 27 41 5
...........................................................TGTAAACATCCTACACTCTCAGA.................................................................................................. 23 1 3 135.00 405 247 76 39 17 15 11
...........................................................TGTAAACATCCTACACTCTCAGCTT................................................................................................ 25 1 3 104.33 313 160 96 24 17 2 14
...........................................................TGTAAACATCCTACACTCTCAGCA................................................................................................. 24 1 3 81.00 243 100 52 69 14 1 7
..................................................................................................CTGGGAGAGGGTTGTTTACTC............................................................. 21 0 1 57.00 57 10 4 27 3 8 5
...........................................................TGTAAACATCCTACACTCTCAGT.................................................................................................. 23 1 3 52.00 156 85 43 11 11 5 1
...........................................................TGTAAACATCCTACACTCTC..................................................................................................... 20 0 3 45.33 136 76 47 5 4 4 0
..................................................................................................CTGGGAGAGGGTTGTTTACT.............................................................. 20 0 1 37.00 37 0 0 30 3 0 4
...........................................................TGTAAACATCCTACACTCTCAGCTA................................................................................................ 25 1 3 36.00 108 48 21 21 4 2 12
............................................................GTAAACATCCTACACTCTCAGCT................................................................................................. 23 0 3 25.00 75 39 21 14 0 0 1
...................................................................................................TGGGAGAGGGTTGTTTACTCC............................................................ 21 0 1 23.00 23 1 2 10 2 8 0
...........................................................TGTAAACATCCTACACTC....................................................................................................... 18 0 5 21.60 108 9 4 92 0 0 3
...........................................................TGTAAACATCCTACACTCTCAGCTTT............................................................................................... 26 1 3 18.67 56 24 27 0 2 1 2
...........................................................TGTAAACATCCTACACTCTCAGCAT................................................................................................ 25 2 3 12.33 37 4 5 19 0 0 9
...........................................................TGTAAACATCCTACACTCT...................................................................................................... 19 0 3 12.00 36 11 11 4 7 3 0
...........................................................TGTAAACATCCTACACTCTCAGCTGTGAGCT.......................................................................................... 31 0 1 12.00 12 0 3 0 0 8 1
..................................................................................................CTGGGAGAGGGTTGTTTACTCA............................................................ 22 1 1 10.00 10 0 0 10 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTAT............................................................................................... 26 1 3 9.67 29 11 6 5 4 0 3
............................................................GTAAACATCCTACACTCTCAGC.................................................................................................. 22 0 3 9.00 27 14 8 4 1 0 0
...................................................................................................TGGGAGAGGGTTGTTTACT.............................................................. 19 0 1 8.00 8 0 0 8 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACTCT............................................................ 22 1 2 8.00 16 5 5 2 1 3 0
...........................................................TGTAAACATCCTACAC......................................................................................................... 16 0 6 7.17 43 0 0 36 0 1 6
...........................................................TGTAAACATCCTACACTCTCAGTT................................................................................................. 24 1 3 6.67 20 14 5 0 1 0 0
...........................................................TGTAAACATCCTACACTCTCAGCAA................................................................................................ 25 2 3 6.33 19 2 2 3 1 0 11
...........................................................TGTAAACATCCTACACTCTCAGCG................................................................................................. 24 1 3 6.00 18 7 5 3 3 0 0
...................................................................................................TGGGAGAGGGTTGTTTACTCCT........................................................... 22 0 1 5.00 5 0 1 4 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACA.............................................................. 20 1 1 5.00 5 0 0 5 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACTCCA........................................................... 23 1 1 5.00 5 1 0 3 0 1 0
..................................................................................................CTGGGAGAGGGTTGTTTAC............................................................... 19 0 1 5.00 5 1 0 4 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACTA............................................................. 21 1 1 5.00 5 0 0 5 0 0 0
...........................................................TGTAAACATCCTACACTTTCAGCT................................................................................................. 24 1 3 4.67 14 4 4 6 0 0 0
...........................................................TGTAAACATCCTACACTCTTAGCT................................................................................................. 24 1 3 4.67 14 6 5 3 0 0 0
...........................................................TGTAAACATCCTACACTCTCAA................................................................................................... 22 1 3 4.00 12 5 4 2 1 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTGTGAGC........................................................................................... 30 0 1 4.00 4 0 3 0 0 0 1
...........................................................TGTAAACATCCTACACTCTCAGCTGT............................................................................................... 26 0 3 4.00 12 3 2 0 5 2 0
...........................................................TGTAAACATCCTATACTCTCAGCT................................................................................................. 24 1 3 3.67 11 6 4 0 0 0 1
...........................................................TGTAAACATCTTACACTCTCAGCT................................................................................................. 24 1 3 3.67 11 1 2 6 0 0 2
...........................................................TGTAAACATTCTACACTCTCAGCT................................................................................................. 24 1 3 3.67 11 2 4 4 0 0 1
...........................................................TGTAAACATCCTACACTCTCAGAA................................................................................................. 24 2 3 3.33 10 3 1 2 0 0 4
...........................................................TGTAAACATCCTACACTCTCAGCTAA............................................................................................... 26 2 3 3.33 10 4 1 1 0 0 4
...........................................................TGTAAACATCCTACACTCTCAGCTG................................................................................................ 25 0 3 3.00 9 3 3 0 2 0 1
...........................................................TGTAAACATCCTACATTCTCAGCT................................................................................................. 24 1 3 3.00 9 3 0 4 0 1 1
...........................................................CGTAAACATCCTACACTCTCAGCT................................................................................................. 24 1 3 3.00 9 3 4 1 1 0 0
...........................................................TGCAAACATCCTACACTCTCAGCT................................................................................................. 24 1 3 2.67 8 5 2 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCT.................................................................................................... 21 1 3 2.67 8 5 3 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAT................................................................................................... 22 1 3 2.67 8 4 2 1 0 1 0
...........................................................TGTAAACATTCTACACTCTCAGC.................................................................................................. 23 1 3 2.67 8 1 3 4 0 0 0
...................................................................................................TGGGAGAGGGTTGTTTACTCT............................................................ 21 1 2 2.50 5 3 1 0 0 1 0
...........................................................TGTAACCATCCTACACTCTCAGCT................................................................................................. 24 1 3 2.33 7 3 1 2 0 0 1
...........................................................TGTAAACATCTTACACTCTCAGC.................................................................................................. 23 1 3 2.33 7 1 1 5 0 0 0
...........................................................TATAAACATCCTACACTCTCAGCT................................................................................................. 24 1 3 2.00 6 1 1 3 0 0 1
..................................................................................................CTGGGAGAGGGTTGTTTACTCCT........................................................... 23 0 1 2.00 2 1 0 1 0 0 0
...........................................................TGTAAACATCCCACACTCTCAGCT................................................................................................. 24 1 3 2.00 6 2 4 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTGAGAG............................................................................................ 29 1 1 2.00 2 0 0 0 0 0 2
...........................................................TGCAAACATCCTACACTCTCAGC.................................................................................................. 23 1 3 2.00 6 5 0 1 0 0 0
...................................................................................................TGGGAGAGGGTTGTTTACTC............................................................. 20 0 1 2.00 2 1 0 1 0 0 0
...................................................................................................TGGGAGAGGGTTGTTTACTCA............................................................ 21 1 1 2.00 2 0 0 2 0 0 0
...................................................................................................TGGGAGAGGGTTGTTTACTCCA........................................................... 22 1 1 2.00 2 0 0 2 0 0 0
...........................................................TCTAAACATCCTACACTCTCAGCT................................................................................................. 24 1 3 2.00 6 5 1 0 0 0 0
...........................................................TGAAAACATCCTACACTCTCAGCT................................................................................................. 24 1 3 1.67 5 3 2 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCGT................................................................................................ 25 2 3 1.67 5 5 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCCGCT................................................................................................. 24 1 3 1.67 5 2 0 2 0 0 1
...........................................................TGTAAACGTCCTACACTCTCAGCT................................................................................................. 24 1 3 1.67 5 2 3 0 0 0 0
...........................................................TGTAAACATCCTACACTTTCA.................................................................................................... 21 1 3 1.67 5 3 0 0 1 0 1
...........................................................TGTAAACATCCTACACTTTCAGC.................................................................................................. 23 1 3 1.67 5 3 1 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCC................................................................................................. 24 1 3 1.67 5 2 1 2 0 0 0
...........................................................AGTAAACATCCTACACTCTCAGCT................................................................................................. 24 1 3 1.67 5 3 0 2 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTTA............................................................................................... 26 2 3 1.67 5 1 4 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCATCT................................................................................................. 24 1 3 1.67 5 2 2 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGTTT................................................................................................ 25 2 3 1.67 5 5 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTTTT.............................................................................................. 27 2 3 1.33 4 2 1 0 0 0 1
...........................................................TGTAAACATCCTACACTCTCAGCTTAT.............................................................................................. 27 3 3 1.33 4 2 0 1 0 0 1
...........................................................TGTAAACATCCTATACTCTCAGC.................................................................................................. 23 1 3 1.33 4 3 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTTAGC.................................................................................................. 23 1 3 1.33 4 2 0 2 0 0 0
............................................................GTAAACATCCTACACTCTCAG................................................................................................... 21 0 3 1.33 4 1 0 3 0 0 0
...........................................................TGTAAACATCCTACACTCTCG.................................................................................................... 21 1 3 1.33 4 4 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTAAA.............................................................................................. 27 3 3 1.33 4 0 1 1 1 0 1
...........................................................TGTAAACACCCTACACTCTCAGCT................................................................................................. 24 1 3 1.33 4 2 2 0 0 0 0
...........................................................TGTAAACATCCTCCACTCTCAGCT................................................................................................. 24 1 3 1.33 4 2 1 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTATT.............................................................................................. 27 2 3 1.33 4 1 2 0 1 0 0
...........................................................TGTAAATATCCTACACTCTCAGCT................................................................................................. 24 1 3 1.33 4 3 0 0 0 0 1
...........................................................TGTAAACATCCTACACTCCCAGCT................................................................................................. 24 1 3 1.33 4 2 1 0 0 1 0
...........................................................TGTAAACATCCTACACCCTCAGCT................................................................................................. 24 1 3 1.33 4 3 1 0 0 0 0
...........................................................TGTAAACATCCTACACCTTCAGCT................................................................................................. 24 2 3 1.33 4 3 1 0 0 0 0
...........................................................TGTAAACATCCTACACACTCAGCT................................................................................................. 24 1 3 1.33 4 1 1 1 0 1 0
...........................................................TGTAAACATCCTACACTCTCAGCTTAAA............................................................................................. 28 3 1 1.00 1 1 0 0 0 0 0
...........................................................TGTAAGCATCCTACACTCTCAGCT................................................................................................. 24 1 3 1.00 3 0 3 0 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACTCG............................................................ 22 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................CTGGGTGAGGGTTGTTTACTC............................................................. 21 1 1 1.00 1 0 0 1 0 0 0
............................................................GTAAACATCCTACACTCTCAGA.................................................................................................. 22 1 3 1.00 3 1 0 2 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACTCCAT.......................................................... 24 1 1 1.00 1 0 0 1 0 0 0
...........................................................TGTAAACATACTACACTCTCAGCT................................................................................................. 24 1 3 1.00 3 1 1 1 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACTCTA........................................................... 23 2 2 1.00 2 0 0 0 0 0 2
..................................................................................................CTGGGAGAGGCTTGTTTACTCC............................................................ 22 1 1 1.00 1 0 0 0 0 1 0
................................CTCGGGCCGTAACCATGCCGTAGTGCG......................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0
...........................................................TGTAAACATCCTACACTCTCAGAT................................................................................................. 24 1 3 1.00 3 1 2 0 0 0 0
...................................................................................................TGGGAGAGGGTTGTTTACTCCAA.......................................................... 23 2 2 1.00 2 0 0 2 0 0 0
...........................................................TGTAAACATCATACACTCTCAGCT................................................................................................. 24 1 3 1.00 3 2 0 0 1 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACTT............................................................. 21 1 1 1.00 1 0 0 1 0 0 0
......................................................GGGAGTGTAAACATCCTACACTCTCAG................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................TCTGCCATGGAAAACGTCAGCTGAAGAACA............................. 30 3 1 1.00 1 0 1 0 0 0 0
...........................................................CGTAAACATCCTACACTCTCAGC.................................................................................................. 23 1 3 1.00 3 1 1 1 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACTCCTT.......................................................... 24 0 1 1.00 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCAAA............................................................................................... 26 3 3 1.00 3 0 2 1 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACTCCAA.......................................................... 24 2 1 1.00 1 0 0 1 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACTCTTT.......................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTAAGA............................................................................................. 28 2 1 1.00 1 0 1 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTC................................................................................................ 25 1 3 1.00 3 2 1 0 0 0 0
...................................................................................GTGAGCTCGAGGTGGC................................................................................. 16 0 1 1.00 1 0 0 1 0 0 0
..........................................................ATGTAAACATCCTACACTCTCAGCT................................................................................................. 25 1 3 1.00 3 2 1 0 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACTAA............................................................ 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................CATGTAAACATCCTACACTCTCAGC.................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTGTGAGCTC......................................................................................... 32 0 1 1.00 1 0 1 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCATT............................................................................................... 26 2 3 1.00 3 0 1 0 0 1 1
....................................................................................................GGGAGAGGGTTGTTTACTC............................................................. 19 0 1 1.00 1 0 0 1 0 0 0
...........................................................TGTAAATATCCTACACTCTCAGA.................................................................................................. 23 2 3 1.00 3 0 0 3 0 0 0
...........................................................TGTAAACATCCTACACTCTCGGCT................................................................................................. 24 1 3 1.00 3 1 1 0 0 0 1
..................................................................................................CTGGGAGCGGGTTGTTTACTCA............................................................ 22 2 1 1.00 1 0 0 0 0 0 1
............................................................GTAAACATCCTACACTCTCAGCTT................................................................................................ 24 1 3 1.00 3 1 2 0 0 0 0
...........................................................TGTGAACATCCTACACTCTCAGCT................................................................................................. 24 1 3 1.00 3 1 2 0 0 0 0
......................................CCGTAACCATGCCGTAGTGCG......................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTGCACTCTCAGC.................................................................................................. 23 1 3 1.00 3 2 1 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTCGGA............................................................................................. 28 2 1 1.00 1 0 0 1 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACTCCG........................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TGGGAGAGGGTTGTTTACTCCAT.......................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.............................................................................TCAGCTGTGAGCTCGAGGTGG.................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTTA.................................................................................................... 21 1 4 0.75 3 2 1 0 0 0 0
...........................................................TGTAAACATCCTACACCCTCAGC.................................................................................................. 23 1 3 0.67 2 1 0 0 0 0 1
...........................................................TGTACACATCCTACACTCTCAGCT................................................................................................. 24 1 3 0.67 2 1 1 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTGA............................................................................................... 26 1 3 0.67 2 0 2 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCATA.................................................................................................. 23 2 3 0.67 2 0 0 2 0 0 0
...........................................................TGTAACCATCCTACACTCTCAGC.................................................................................................. 23 1 3 0.67 2 0 0 2 0 0 0
............................................................GTAAACATCCTATACTCTCAGCT................................................................................................. 23 1 3 0.67 2 0 0 0 0 0 2
...........................................................TGTAAACATCCTACAGTCTCAGCT................................................................................................. 24 1 3 0.67 2 2 0 0 0 0 0
...........................................................TGTAAACATCCAACACTCTCAGC.................................................................................................. 23 1 3 0.67 2 2 0 0 0 0 0
................................................................ACATCCTACACTCTCAGCT................................................................................................. 19 0 3 0.67 2 1 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCTGCT................................................................................................. 24 1 3 0.67 2 2 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCGGC.................................................................................................. 23 1 3 0.67 2 1 1 0 0 0 0
...........................................................TGTAAACATCCTGCACTCTCAGCT................................................................................................. 24 1 3 0.67 2 1 1 0 0 0 0
...........................................................TGTATACATCCTACACTCTCAGCT................................................................................................. 24 1 3 0.67 2 1 1 0 0 0 0
...........................................................TGTAAACATCCTTCACTCTCAGCT................................................................................................. 24 1 3 0.67 2 1 1 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCATC.................................................................................................. 23 1 3 0.67 2 0 0 1 1 0 0
...........................................................TGTAAACATTCTACACTCTCA.................................................................................................... 21 1 3 0.67 2 1 0 0 1 0 0
...........................................................TGTAAACATCCTACCCTCTCAGCT................................................................................................. 24 1 3 0.67 2 0 0 2 0 0 0
...........................................................TGTAAACATCCTACACTCTCACCT................................................................................................. 24 1 3 0.67 2 1 0 0 1 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTATA.............................................................................................. 27 2 3 0.67 2 1 0 0 0 0 1
.............................................................TAAACATCCTACACTCTCA.................................................................................................... 19 0 3 0.67 2 1 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCATT.................................................................................................. 23 2 3 0.67 2 1 1 0 0 0 0
...........................................................TGTCAACATCCTACACTCTCAGCT................................................................................................. 24 1 3 0.67 2 0 0 1 0 0 1
...........................................................TGTAAACATCCTACGCTCTCAGCT................................................................................................. 24 1 3 0.67 2 0 2 0 0 0 0
...........................................................TGTAAACATCCTACACTCCCAGC.................................................................................................. 23 1 3 0.67 2 1 1 0 0 0 0
...........................................................TGTAAACATCCTACACTCTAAGCT................................................................................................. 24 1 3 0.67 2 0 0 1 0 0 1
............................................................GTAAACATCCTACACTCTCA.................................................................................................... 20 0 3 0.67 2 0 0 2 0 0 0
...........................................................TGTAAAAATCCTACACTCTCAGCT................................................................................................. 24 1 3 0.67 2 0 1 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCGA................................................................................................ 25 2 3 0.67 2 2 0 0 0 0 0
...........................................................TGTAAACGTCCTACACTCTCAGC.................................................................................................. 23 1 3 0.67 2 2 0 0 0 0 0
...........................................................TGTAAATATCCTACACTCTCAGC.................................................................................................. 23 1 3 0.67 2 1 1 0 0 0 0
...........................................................TGTAAACATCATACACTCTCAGC.................................................................................................. 23 1 3 0.67 2 2 0 0 0 0 0
...........................................................TGTAAACACCCTACACTCTCAGC.................................................................................................. 23 1 3 0.67 2 1 0 0 1 0 0
..................................................................................................CTAGGAGAGGGTTGTTTAC............................................................... 19 1 2 0.50 1 0 0 1 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTACTCAA........................................................... 23 2 2 0.50 1 0 0 1 0 0 0
..................................................................................................CTGGGAGAGGGTTGTTTAA............................................................... 19 1 2 0.50 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACCTCCAGCT................................................................................................. 24 3 4 0.50 2 2 0 0 0 0 0
...................................................................................................TGGGAGAGGGTTGTTTACTTA............................................................ 21 2 2 0.50 1 0 0 0 0 0 1
...........................................................TGTAAACATCCTACACT........................................................................................................ 17 0 5 0.40 2 1 0 0 0 1 0
...........................................................TGTAAACATCCCACACTCTCAGCA................................................................................................. 24 2 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGGT................................................................................................. 24 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATTCTACACTCTCAG................................................................................................... 22 1 3 0.33 1 0 0 0 0 0 1
...........................................................TATAAACATCCTACACTCTCAGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTAC............................................................................................... 26 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGACT................................................................................................ 25 3 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCCCAGCATT............................................................................................... 26 3 3 0.33 1 1 0 0 0 0 0
...........................................................AGTAAACATCCTACACTCTCAGCA................................................................................................. 24 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTGAACGTCCTACACTCTCAGC.................................................................................................. 23 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACTCTCTCAGCT................................................................................................. 24 1 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGG.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATTCTACACTCTCAGCAT................................................................................................ 25 3 3 0.33 1 0 0 1 0 0 0
..........................................................TTGTAAACATCCTACACTCTCA.................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAACCATCCTACACTCTCAGT.................................................................................................. 23 2 3 0.33 1 0 0 1 0 0 0
............................................................GTAAACATCCTACACTCTCAGCTA................................................................................................ 24 1 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGATGGT.............................................................................................. 27 3 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCCGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAACT................................................................................................. 24 1 3 0.33 1 0 1 0 0 0 0
............................................................GTAAACATCCTACATCCTCAGCT................................................................................................. 23 2 3 0.33 1 0 0 0 0 0 1
..........................................................ATGTAAACATCCTACACTCTCAGC.................................................................................................. 24 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTTAA.............................................................................................. 27 3 3 0.33 1 1 0 0 0 0 0
............................................................GTAAACATCCTACACTCTCAGTTT................................................................................................ 24 2 3 0.33 1 0 0 0 0 0 1
...........................................................TGTAAACATCCTACACTCTCAGCTTTAAA............................................................................................ 29 3 3 0.33 1 1 0 0 0 0 0
.................................................................CATCCTACACTCTCAGC.................................................................................................. 17 0 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAACATCTTACACTCTCAGCTAT............................................................................................... 26 2 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACGCTCTCAGC.................................................................................................. 23 1 3 0.33 1 0 0 1 0 0 0
...........................................................TGTACACATCCTACACTCTCAGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTCT............................................................................................... 26 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACCTCCTACACTCTCAGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...........................................................TATAAACATCCTACACTCTCAGCAT................................................................................................ 25 3 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCACA.................................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0
...........................................................AGTAAACATCCTACACTCTCAGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCACAG................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACTCTCTCAGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...........................................................GGTAAACATCCTACACTCTCAGCT................................................................................................. 24 1 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAGACATCCTACACTCTCAGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCAAT............................................................................................... 26 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCTTACACTCTCAGCA................................................................................................. 24 2 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACCCTCAG................................................................................................... 22 1 3 0.33 1 0 0 1 0 0 0
...........................................................AGTAAACATCCTACACTCTCAGA.................................................................................................. 23 2 3 0.33 1 0 0 0 0 0 1
...........................................................TGTAAACATCCTACACTCCCA.................................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGTTA................................................................................................ 25 2 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAGACATCCTACACTCTCAGCT................................................................................................. 24 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACAGTCTCAGC.................................................................................................. 23 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAATCATCCTACACTCTCAGCT................................................................................................. 24 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAACCATCCTACACTCTCAG................................................................................................... 22 1 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCATACACTCTCAG................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTGTCAGCTT................................................................................................ 25 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCGCA.................................................................................................... 21 1 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTTTAT............................................................................................. 28 3 3 0.33 1 0 0 0 0 0 1
..................................................................ATCCTACACTCTCAGCT................................................................................................. 17 0 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCGTACACTCTCAGC.................................................................................................. 23 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAACATCCAACACTCTCAGCT................................................................................................. 24 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAAGATCCTACACTCTCAGCT................................................................................................. 24 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCACT.................................................................................................. 23 2 3 0.33 1 0 0 0 0 0 1
...........................................................TGTATACATCCTACACTCTCAGT.................................................................................................. 23 2 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAACATCCTACACCCTCA.................................................................................................... 21 1 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCAAT.................................................................................................. 23 2 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCCCAGCTT................................................................................................ 25 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACGTCCTACACTCT...................................................................................................... 19 1 3 0.33 1 1 0 0 0 0 0
........................................................ATTTGTAAACATCCTACACTCTCAGC.................................................................................................. 26 3 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTTTCAG................................................................................................... 22 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGTACACATCCTACACTCTCAGCA................................................................................................. 24 2 3 0.33 1 0 0 1 0 0 0
...........................................................TGGAAACATCCTACACTCTCAGCT................................................................................................. 24 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGTCAACATCCTACACTCTCAGC.................................................................................................. 23 1 3 0.33 1 0 0 0 0 0 1
...........................................................TGTAAACATCCTACACTATCAGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...........................................................CGTAAACATCCTACACTCTCA.................................................................................................... 21 1 3 0.33 1 0 1 0 0 0 0
...............................................................AACATCCTACACTCTCAG................................................................................................... 18 0 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACATTCTCA.................................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0
.................................................................CATCCTACACTCTCAGCT................................................................................................. 18 0 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACACCCTACACTCTCAGA.................................................................................................. 23 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGTA................................................................................................. 24 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAATATCCTACACTCTC..................................................................................................... 20 1 3 0.33 1 0 1 0 0 0 0
............................................................GTAAGCATCCTACACTCTCAGCT................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTATACTCTCAGCTA................................................................................................ 25 2 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTTTCAGCTT................................................................................................ 25 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTGAGC.................................................................................................. 23 1 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACTCTCTC..................................................................................................... 20 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTTAG................................................................................................... 22 1 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTTAGCAA................................................................................................ 25 3 3 0.33 1 0 0 1 0 0 0
..............................................................AAACATCCTACACTCTCAGC.................................................................................................. 20 0 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAGCATCCTACACTCTCAGC.................................................................................................. 23 1 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGTAT................................................................................................ 25 3 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCGGCA................................................................................................. 24 2 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAACATCCTCCACTCTCA.................................................................................................... 21 1 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTAAGC............................................................................................. 28 3 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGTC................................................................................................. 24 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTT..................................................................................................... 20 1 6 0.33 2 1 0 1 0 0 0
...........................................................TGTAAACATCCTACACTCTCAAC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
............................................................GAAAACATCCTACACTCTCAGCT................................................................................................. 23 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCCAT............................................................................................... 26 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCAGA............................................................................................... 26 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACAATCTCAGCT................................................................................................. 24 1 3 0.33 1 1 0 0 0 0 0
...........................................................TTTAAACATCCTACACTCTCAGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
............................................................GTAAACATCCTACACTCTCAGCTGT............................................................................................... 25 0 3 0.33 1 0 0 0 1 0 0
...........................................................TGTAAACATCCTGCACTCTC..................................................................................................... 20 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCACAGCT................................................................................................. 24 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACATCCTCAGCT................................................................................................. 24 2 3 0.33 1 0 0 1 0 0 0
...........................................................TGTGAACATCCTACACTCTCAGT.................................................................................................. 23 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTATACTCTCAG................................................................................................... 22 1 3 0.33 1 0 0 1 0 0 0
...........................................................TGTAGACATCCTACACTCTCA.................................................................................................... 21 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAACATCCTAGACTCTCAGCT................................................................................................. 24 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGAAAACATCCTACACTCTCAGCA................................................................................................. 24 2 3 0.33 1 0 0 0 0 0 1
...........................................................TGTAAATATCCTACACTCTCAGCTA................................................................................................ 25 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTAAC.............................................................................................. 27 3 3 0.33 1 0 1 0 0 0 0
...........................................................TGCAAACATCCTACACTCTCA.................................................................................................... 21 1 3 0.33 1 0 0 0 0 0 1
...........................................................TGTAAACATCCTACACTCTCAGCCA................................................................................................ 25 2 3 0.33 1 0 0 1 0 0 0
......................................................GAGAGTGTAAACATCCTACACTCTCAG................................................................................................... 27 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAAA.................................................................................................. 23 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACACTCAGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
........................................................ATTTGTAAACATCCTACACTCTCAGCT................................................................................................. 27 3 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAATCATCCTACACTCTCAGC.................................................................................................. 23 1 3 0.33 1 0 0 1 0 0 0
...........................................................TGTGAACATCCTACACTCTCAGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTATACTCT...................................................................................................... 19 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGTATACATCCTACACTCTCAGA.................................................................................................. 23 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTGTCAGCT................................................................................................. 24 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAACCTCCTACATTCTCAGCT................................................................................................. 24 2 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGAAT................................................................................................ 25 3 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCATTA................................................................................................. 24 3 3 0.33 1 0 1 0 0 0 0
...........................................................TGAAAACATCCTACACTCTCAGCTT................................................................................................ 25 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCCACACTCTCAGC.................................................................................................. 23 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAACATCCTACACTCTAAGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCACAGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTTCCAGCT................................................................................................. 24 2 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCACCA................................................................................................. 24 2 3 0.33 1 0 0 0 1 0 0
...........................................................TGTAAACATCCTACACTCTTAGT.................................................................................................. 23 2 3 0.33 1 0 0 0 0 1 0
...........................................................TGTAAACATCCTACCCTCTCAGC.................................................................................................. 23 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAATATCCTACACTCTCA.................................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0
...........................................................TGTAAACATCCTACACTCCCAGCTTT............................................................................................... 26 2 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAACATCCTAAACTCTCAGCT................................................................................................. 24 1 3 0.33 1 0 1 0 0 0 0
...........................................................TGTAAACATCCTACACTCTCAGCTAAT.............................................................................................. 27 3 3 0.33 1 0 0 1 0 0 0
...........................................................TGTTAACATCCTACACTCTCAGC.................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0

Anti-sense strand reads

CAGTCACCAGACCCCGGGTGGGAGGGACCTGGGAGCCCGGCATTGGTACGGCATCACGCACATTTGTAGGATGTGAGAGTCGACACTCGAGCTCCACCGACCCTCTCCCAACAAATGAGGAAGACGGTACCTTTTGCGGTCGACTTCTTCCTTGTCAGAGAAGTGGGTCGTGTACCCGGC

*********************************************(((((..((((.....(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).....)))))))))....********************************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:40 AM