ID:

ssc-mir-29b-2

 Coordinate:

chr9:148552438-148552521 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.3 -35.3 -35.0
mature

  1. ssc-mir-29b-1  chr18:19034872-19034894 +
  2. ssc-mir-29b-2  chr9:148552489-148552511 +
star

Sense Strand Reads

GGCTGGGCCTGCCCATCTCATCTCCCTTCTTTCTTCAGTGAGACCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTGCAGCACAGCCAAAGGCCAACTGCAGAGGAGCAGCTGTTCGGGAA

*********************************************.(((((((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).))))))))).))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR139076

testes		 SRR1274763

ovary		 SRR1274764

testes
.....................................................................................................TAGCACCATTTGAAATCAGTGTT............................................................ 23 0 2 17390.50 34781 17842 16624 157 65 74 19
.....................................................................................................TAGCACCATTTGAAATCAGTGT............................................................. 22 0 2 816.50 1633 783 704 67 64 9 6
.....................................................................................................TAGCACCATTTGAAATCAGTGTTT........................................................... 24 0 1 302.00 302 152 117 25 7 1 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTAGA......................................................... 26 2 1 148.00 148 92 56 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGT............................................................... 20 0 2 132.50 265 53 48 106 55 0 3
.....................................................................................................TAGCACCATTTGAAATCAGTG.............................................................. 21 0 2 130.00 260 109 115 18 10 3 5
......................................................................................................AGCACCATTTGAAATCAGTGTT............................................................ 22 0 2 86.00 172 87 80 2 3 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTA........................................................... 24 1 2 46.50 93 41 48 1 3 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTGTT............................................................ 24 0 2 41.50 83 42 40 0 0 0 1
.....................................................................................................TAGCACCATTTGAAATCAGTGTA............................................................ 23 1 2 41.00 82 43 28 8 2 1 0
............................................................CTGGTTTCACATGGTGGCTTAGA..................................................................................................... 23 0 1 33.00 33 17 7 0 4 2 3
.....................................................................................................TAGCACCATTTGAAATCAGTGA............................................................. 22 1 2 31.00 62 29 18 7 7 0 1
.....................................................................................................TAGCACCATCTGAAATCAGTGTT............................................................ 23 1 2 30.00 60 29 31 0 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTG.............................................................. 22 0 2 25.00 50 29 15 2 1 1 2
.....................................................................................................CAGCACCATTTGAAATCAGTGTT............................................................ 23 1 2 24.50 49 24 24 1 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAGT............................................................... 21 0 2 18.00 36 8 8 2 10 4 4
..................................................................................................ATTTAGCACCATTTGAAATCAGTGTT............................................................ 26 1 1 15.00 15 7 8 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGCGTT............................................................ 23 1 2 14.00 28 13 14 0 1 0 0
.....................................................................................................TAGCACCATTTGAAATTAGTGTT............................................................ 23 1 2 13.50 27 14 13 0 0 0 0
............................................................CTGGTTTCACATGGTGGCTTAG...................................................................................................... 22 0 1 13.00 13 1 1 2 5 1 3
.....................................................................................................TAGCACCATTTGGAATCAGTGTT............................................................ 23 1 2 12.50 25 9 16 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTAAA......................................................... 26 2 1 12.00 12 6 5 0 0 1 0
.....................................................................................................TAGCGCCATTTGAAATCAGTGTT............................................................ 23 1 2 10.50 21 9 12 0 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTGT............................................................. 23 0 2 10.00 20 12 6 0 0 1 1
.........................................................................................................ACCATTTGAAATCAGTGTT............................................................ 19 0 2 9.50 19 12 7 0 0 0 0
.....................................................................................................TAGCACCATTCGAAATCAGTGTT............................................................ 23 1 2 9.50 19 7 12 0 0 0 0
.....................................................................................................TAGCATCATTTGAAATCAGTGTT............................................................ 23 1 2 8.50 17 7 9 0 1 0 0
.....................................................................................................TAGCACCATTTGAGATCAGTGTT............................................................ 23 1 2 8.50 17 11 6 0 0 0 0
.....................................................................................................TAGCACTATTTGAAATCAGTGTT............................................................ 23 1 2 8.00 16 7 9 0 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTGA............................................................. 23 1 2 7.50 15 5 6 0 3 1 0
.....................................................................................................TGGCACCATTTGAAATCAGTGTT............................................................ 23 1 2 7.50 15 11 4 0 0 0 0
.....................................................................................................TAGCACCATTTAAAATCAGTGTT............................................................ 23 1 2 7.00 14 7 6 1 0 0 0
.......................................................................................................GCACCATTTGAAATCAGTGTT............................................................ 21 0 2 7.00 14 6 7 1 0 0 0
...........................................................GCTGGTTTCACATGGTGGCTTAG...................................................................................................... 23 0 1 7.00 7 1 1 5 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTG........................................................... 24 1 2 6.50 13 5 6 1 0 1 0
.....................................................................................................TAGCACCACTTGAAATCAGTGTT............................................................ 23 1 2 6.50 13 7 6 0 0 0 0
.....................................................................................................TAGCACCGTTTGAAATCAGTGTT............................................................ 23 1 2 6.50 13 8 5 0 0 0 0
............................................................CTGGTTTCACATGGTGGCTTAGAT.................................................................................................... 24 0 1 6.00 6 0 3 0 0 1 2
.....................................................................................................AAGCACCATTTGAAATCAGTGTT............................................................ 23 1 2 5.50 11 3 8 0 0 0 0
.....................................................................................................TAGTACCATTTGAAATCAGTGTT............................................................ 23 1 2 5.50 11 6 5 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTTT.......................................................... 25 0 1 5.00 5 4 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAAACCAGTGTT............................................................ 23 1 2 5.00 10 5 5 0 0 0 0
.....................................................................................................TAGCACCATTTGAAGTCAGTGTT............................................................ 23 1 2 5.00 10 4 5 1 0 0 0
.....................................................................................................TACCACCATTTGAAATCAGTGTT............................................................ 23 1 2 5.00 10 7 3 0 0 0 0
......................................................................................................AGCACCATTTGAAATCAGTGT............................................................. 21 0 2 5.00 10 5 5 0 0 0 0
.....................................................................................................TAACACCATTTGAAATCAGTGTT............................................................ 23 1 2 5.00 10 3 6 1 0 0 0
.....................................................................................................TAGCAGCATTTGAAATCAGTGTT............................................................ 23 1 2 5.00 10 0 4 3 3 0 0
..........................................................................................................CCATTTGAAATCAGTGTT............................................................ 18 0 2 4.50 9 6 3 0 0 0 0
............................................................CTGGTTTCACATGGTGGCTTA....................................................................................................... 21 0 1 4.00 4 1 1 1 1 0 0
.....................................................................................................TAGCACCATTTGAAATCAGAGTT............................................................ 23 1 2 4.00 8 3 5 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAG................................................................ 19 0 2 4.00 8 5 1 2 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTGGA......................................................... 26 2 1 4.00 4 3 1 0 0 0 0
...........................................................GCTGGTTTCACATGGTGGCTTAGA..................................................................................................... 24 0 1 4.00 4 1 1 2 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGGGTT............................................................ 23 1 2 4.00 8 5 3 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTC............................................................ 23 1 2 4.00 8 3 5 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTGA.......................................................... 25 2 2 3.50 7 3 4 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGCT............................................................ 23 1 2 3.50 7 4 3 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGC............................................................. 22 1 2 3.50 7 3 1 1 2 0 0
.....................................................................................................TAGCACCATCTGAAATCGGTGTT............................................................ 23 2 3 3.33 10 6 4 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTATT............................................................ 23 1 2 3.00 6 2 4 0 0 0 0
....................................................................................................ATAGCACCATTTGAAATCAGTGTT............................................................ 24 1 2 3.00 6 5 1 0 0 0 0
..................................................................................................ATTTAGCACCATTTGAAATCAGTGA............................................................. 25 2 1 3.00 3 2 1 0 0 0 0
............................................................CTGGTTTCACATGGTGGCTTAGT..................................................................................................... 23 1 1 3.00 3 0 1 1 0 1 0
.....................................................................................................TAGCACCATTTGAAACCAGTGTTT........................................................... 24 1 1 3.00 3 0 0 3 0 0 0
.....................................................................................................TATCACCATTTGAAATCAGTGTT............................................................ 23 1 2 3.00 6 4 2 0 0 0 0
.....................................................................................................TAGCAGCATTTGAAATCAGTGTTT........................................................... 24 1 1 3.00 3 0 0 2 1 0 0
...........................................................GCTGGTTTCACATGGTGGCTT........................................................................................................ 21 0 1 3.00 3 1 1 0 1 0 0
.....................................................................................................TAGCTCCATTTGAAATCAGTGTT............................................................ 23 1 2 3.00 6 5 1 0 0 0 0
.......................................................................................................GCACCATTTGAAATCAGTGTTA........................................................... 22 1 2 3.00 6 2 3 0 1 0 0
...........................................................................................................CATTTGAAATCAGTGTT............................................................ 17 0 5 2.80 14 10 4 0 0 0 0
.....................................................................................................TAGCACCATATGAAATCAGTGTT............................................................ 23 1 2 2.50 5 5 0 0 0 0 0
.....................................................................................................TAGCACCATTTGTAATCAGTGTT............................................................ 23 1 2 2.50 5 3 2 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTTTT............................................................ 23 1 2 2.50 5 3 2 0 0 0 0
.....................................................................................................TAGCACCATTAGAAATCAGTGTT............................................................ 23 1 2 2.50 5 3 2 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCATTGTT............................................................ 23 1 2 2.50 5 2 3 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCGGTGTT............................................................ 23 1 2 2.50 5 3 2 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGGT............................................................ 23 1 2 2.00 4 2 1 0 1 0 0
....................................................................................................ATAGCACCATTTGAAATCAGTGTTTT.......................................................... 26 1 1 2.00 2 1 1 0 0 0 0
.....................................................................................................TAGCACCCTTTGAAATCAGTGTT............................................................ 23 1 2 2.00 4 2 2 0 0 0 0
..................................................................................................ATTTAGCACCATTTGAAATCAGTGT............................................................. 25 1 1 2.00 2 1 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTT.............................................................. 21 1 4 2.00 8 1 3 3 1 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTAT........................................................... 24 1 1 2.00 2 1 0 0 0 1 0
.....................................................................................................TAGCACCATTTGCAATCAGTGTT............................................................ 23 1 2 2.00 4 3 1 0 0 0 0
.....................................................................................................TAGCACCATTGGAAATCAGTGTT............................................................ 23 1 2 2.00 4 2 2 0 0 0 0
.............................................................TGGTTTCACATGGTGGCTTAGAT.................................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0
.....................................................................................................TAGCACAATTTGAAATCAGTGTT............................................................ 23 1 2 2.00 4 3 1 0 0 0 0
.....................................................................................................TAGCACCATCTGAAATCAGTGT............................................................. 22 1 2 2.00 4 2 2 0 0 0 0
......................................................................................................AGCACCATTTGAAATCAGT............................................................... 19 0 2 2.00 4 0 0 3 1 0 0
.....................................................................................................TAGCACCATTTTAAATCAGTGTTT........................................................... 24 1 1 2.00 2 0 0 2 0 0 0
.....................................................................................................TAGCACCATTTTAAATCAGTGTT............................................................ 23 1 2 2.00 4 4 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTGTAG........................................................ 27 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATC.................................................................. 17 0 4 1.75 7 1 0 3 1 1 1
............................................................................................................ATTTGAAATCAGTGTT............................................................ 16 0 11 1.55 17 10 7 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATAAGTGTT............................................................ 23 1 2 1.50 3 1 2 0 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAG................................................................ 20 0 2 1.50 3 1 0 0 0 1 1
.....................................................................................................CAGCACCATTTGAAATCAGTGT............................................................. 22 1 2 1.50 3 3 0 0 0 0 0
.....................................................................................................TAGCACGATTTGAAATCAGTGTT............................................................ 23 1 2 1.50 3 3 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCGGTGT............................................................. 22 1 2 1.50 3 2 1 0 0 0 0
.....................................................................................................TTGCACCATTTGAAATCAGTGTT............................................................ 23 1 2 1.50 3 2 1 0 0 0 0
.....................................................................................................CAGCAGCATTTGAAATCAGTGTT............................................................ 23 2 2 1.50 3 1 2 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTA.............................................................. 21 1 2 1.50 3 0 1 1 1 0 0
.....................................................................................................TAGCACCATTTGAAGTCAGTGT............................................................. 22 1 2 1.50 3 0 2 0 1 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTTT............................................................. 22 1 2 1.50 3 0 1 1 1 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGAT............................................................ 23 1 2 1.50 3 1 2 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTAA........................................................... 24 2 2 1.50 3 2 0 0 1 0 0
.....................................................................................................TAGCACCATTTGAAATCA................................................................. 18 0 3 1.33 4 0 2 0 2 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTT.............................................................. 22 1 3 1.33 4 0 2 1 0 1 0
.....................................................................................................TAGCACCATTTGAAA.................................................................... 15 0 18 1.28 23 1 1 17 4 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTCGGA......................................................... 26 3 1 1.00 1 0 0 0 1 0 0
.....................................................................................................TGGCACCATTTGAAATCAGTGT............................................................. 22 1 2 1.00 2 2 0 0 0 0 0
.....................................................................................................TAGCACCTTTTGAAATCAGTGTT............................................................ 23 1 2 1.00 2 2 0 0 0 0 0
...........................................................GCTGGTTTCACATGGTGGCTTAGAA.................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
............................................................CTGGTTTCACATGGTGGCTTAGATT................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATGAGTGTT............................................................ 23 1 2 1.00 2 2 0 0 0 0 0
.............................................................TGGTTTCACATGGTGGCTTA....................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGCGTTAGA......................................................... 26 3 1 1.00 1 0 1 0 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTGTTT........................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................TAGCACTATTTGAAATCAGTGTTT........................................................... 24 1 1 1.00 1 0 0 0 1 0 0
.....................................................................................................TAGCACCATTTGAATTCAGTGTT............................................................ 23 1 2 1.00 2 0 2 0 0 0 0
.....................................................................................................TAGCACCATTTCAAATCAGTGTTAGA......................................................... 26 3 1 1.00 1 0 1 0 0 0 0
............................................................CTGGCTTCACATGGTGGCTTAG...................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1
.....................................................................................................TAGCACCATTTGAAATCAGAGTTT........................................................... 24 1 1 1.00 1 0 1 0 0 0 0
.............................................................TGGTTTCACATGGTGGCTTAGA..................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGCGT............................................................. 22 1 2 1.00 2 1 1 0 0 0 0
............................................................CTGGTTTCACATGGTGGCTT........................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TAGGACCATTTGAAATCAGTGTT............................................................ 23 1 2 1.00 2 1 1 0 0 0 0
............................................................CTGGTTTCACCTGGTGGCTTAGA..................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ATTTAGCACCATTTGAAATCAGTGTTT........................................................... 27 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CATAGCACCATTTGAAATCAGTGTT............................................................ 25 2 2 1.00 2 2 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAATGTT............................................................ 23 1 2 1.00 2 2 0 0 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTA.............................................................. 22 1 2 1.00 2 0 2 0 0 0 0
............................................................CTGGTTTCACATGGTGGCTTAA...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................GCTGGTTTCACATGGTGGCTTTT...................................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.....................................................................................................TAGCACCGTTTGAAATCAGTGTTT........................................................... 24 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTATA......................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TAGCAACATTTGAAATCAGTGTT............................................................ 23 1 2 1.00 2 1 1 0 0 0 0
............................................................CTGGTTTCACATGGTGGCTTAGAA.................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 1
.....................................................................................................TAGCACCATTTGAAATCATTGTTT........................................................... 24 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAAAACAGTGTT............................................................ 23 1 2 1.00 2 1 1 0 0 0 0
............................................................CTGGCTTCACATGGTGGCTTCGA..................................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................................TAGCACCATTTGAAATCACTGTT............................................................ 23 1 3 1.00 3 1 2 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTTAGA........................................................ 27 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TAGCACAATTTGAAATCAGTGTTT........................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGAA............................................................ 23 2 2 1.00 2 2 0 0 0 0 0
.............................................................TGGTTTCACATGGTGGCTTAGATA................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
...........................................................GCTGGTTTCACATGGTGGCTTA....................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTTCCA........................................................ 27 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGAGTTAGA......................................................... 26 3 1 1.00 1 1 0 0 0 0 0
......................................................................................................AGCACCATTTGAAATCAGTGTTT........................................................... 23 0 1 1.00 1 0 0 0 1 0 0
...........................................................GCTGGTTTCACATGGTGGC.......................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGTAATCAGTGTTAGA......................................................... 26 3 1 1.00 1 0 1 0 0 0 0
.............................................................CGGTTTCACATGGTGGCTTA....................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0
...........................................................GCTGGTTTCACATGGTGGCTTAT...................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................................CCATTTGAAATCAGTGTTT........................................................... 19 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................GAGCACCATTTGAAATCAGTGTT............................................................ 23 1 2 1.00 2 2 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTCTTT........................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..............................................................GGTTTCACATGGTGGCTTAG...................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCTGTGTT............................................................ 23 1 2 1.00 2 2 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGCGTTT........................................................... 24 1 1 1.00 1 0 1 0 0 0 0
............................................................CTGGTTTCACATGGTGGCTTAT...................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTAAAATCAGTGTTT........................................................... 24 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTCC............................................................. 22 2 4 0.75 3 1 2 0 0 0 0
.....................................................................................................TAGCACCATCTGAAATCAGT............................................................... 20 1 4 0.75 3 2 0 0 1 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTC.............................................................. 21 1 3 0.67 2 0 1 0 0 0 1
.....................................................................................................TAGCACCATTTGAAATCAA................................................................ 19 1 3 0.67 2 2 0 0 0 0 0
.....................................................................................................TAGGACCATTTGAAATCAGT............................................................... 20 1 3 0.67 2 0 0 2 0 0 0
.....................................................................................................TAGCACCATTTGAAATCGGTAT............................................................. 22 2 3 0.67 2 0 0 1 1 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTAT.......................................................... 25 1 2 0.50 1 1 0 0 0 0 0
......................................................................................................AGCACCATTTGAAATCAGTGTTAA.......................................................... 24 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCGTTGTT............................................................ 23 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTCAAATCAGTGTT............................................................ 23 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TAGAACCATTTGAAATCAGTGT............................................................. 22 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGAACCATTTGAAATCAGTGTT............................................................ 23 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................TTAGCACCATTTGAAATCAGTGT............................................................. 23 1 2 0.50 1 0 0 0 1 0 0
.....................................................................................................TAGCACCATTTGAAATCGGTTTTT........................................................... 24 2 2 0.50 1 0 0 1 0 0 0
.....................................................................................................TAGCACCACTTGAAATCAGTG.............................................................. 21 1 2 0.50 1 1 0 0 0 0 0
.......................................................................................................TCACCATTTGAAATCAGTGTT............................................................ 21 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAGATCAGTG.............................................................. 21 1 2 0.50 1 0 1 0 0 0 0
......................................................................................................AGCACTATTTGAAATCAGTGTTA........................................................... 23 2 2 0.50 1 0 0 1 0 0 0
.......................................................................................................GCACCATTTGAAATCAGTGTA............................................................ 21 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTAGAA........................................................ 27 3 2 0.50 1 0 1 0 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTGTTA........................................................... 25 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTGG............................................................. 23 1 2 0.50 1 0 0 0 0 1 0
........................................................................................................TACCATTTGAAATCAGTGTTT........................................................... 21 1 2 0.50 1 0 0 1 0 0 0
.....................................................................................................TAGCGCCATTTGAAATCAGTGA............................................................. 22 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCCGTGTT............................................................ 23 1 2 0.50 1 0 1 0 0 0 0
......................................................................................................AGCATCATTTGAAATCAGTGTT............................................................ 22 1 2 0.50 1 0 0 1 0 0 0
.....................................................................................................TAGCACCATATGAAATCAGTGT............................................................. 22 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATTAGTGTTA........................................................... 24 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTAA.......................................................... 25 2 2 0.50 1 0 0 1 0 0 0
.....................................................................................................TAGCTCCATTTGAAATCAGCGTT............................................................ 23 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGCAATCAGTGT............................................................. 22 1 2 0.50 1 0 0 0 1 0 0
.....................................................................................................AAGCACCATTTGAAATCAGTGCT............................................................ 23 2 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTCCA......................................................... 26 2 2 0.50 1 0 1 0 0 0 0
.................................................................................................ATTCTAGCACCATTTGAAATCAGTGA............................................................. 26 3 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTAG........................................................... 24 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCAGCATTTGAAATCAGT............................................................... 20 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAACTCAGTGTT............................................................ 23 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTC.............................................................. 22 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................ACTAGCACCATTTGAAATCAGTGA............................................................. 24 2 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TAGCACTATTGGAAATCAGTGTT............................................................ 23 2 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGACATCAGTGT............................................................. 22 1 2 0.50 1 0 0 1 0 0 0
......................................................................................................AGCACCATTTGAAATCAGTGTTA........................................................... 23 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCCGTGT............................................................. 22 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TAGCCCCCTTTGAAATCAGTGTT............................................................ 23 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATTAGTGT............................................................. 22 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCGCCATTTGAAATCAGTGT............................................................. 22 1 2 0.50 1 0 0 1 0 0 0
.....................................................................................................TAGAACCATTTGAAATCAGT............................................................... 20 1 2 0.50 1 0 0 0 1 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTGG.......................................................... 25 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTAGA.......................................................... 25 3 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAGATCAGCGTT............................................................ 23 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGCGTTA........................................................... 24 2 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATGTGAAATCAGTGT............................................................. 22 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................CTAGCACCATTCGAAATCAGTGTT............................................................ 24 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................AGTAGCACCATTTGAAATCAGTGTT............................................................ 25 2 2 0.50 1 0 1 0 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTGTA............................................................ 24 1 2 0.50 1 0 1 0 0 0 0
........................................................................................................CACCATTTGAAATCAGTGTT............................................................ 20 0 2 0.50 1 0 1 0 0 0 0
...............................................................................................ACGATCTAGCACCATTTGAAATCAGTGTT............................................................ 29 3 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTCGAAATCAGTGT............................................................. 22 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TAGCACCCTTTGAAATCAGT............................................................... 20 1 2 0.50 1 0 0 1 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTGTTAA.......................................................... 26 2 2 0.50 1 0 1 0 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTAT............................................................. 23 1 2 0.50 1 0 0 0 1 0 0
.....................................................................................................TAGCACCATTTGAGATCAGTGT............................................................. 22 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCTCCATTTGAAATCAGT............................................................... 20 1 2 0.50 1 0 0 0 1 0 0
......................................................................................................TGCACCATTTGAAATCAGTGT............................................................. 21 1 2 0.50 1 0 1 0 0 0 0
..................................................................................................TTATAGCACCATTTGAAATCAGTGTT............................................................ 26 2 2 0.50 1 0 1 0 0 0 0
....................................................................................................CTAGCACCATTTGAAATCAGTGAA............................................................ 24 2 2 0.50 1 0 0 0 1 0 0
.....................................................................................................ATGCACCATTTGAAATCAGTGTT............................................................ 23 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAAT................................................................... 16 0 7 0.43 3 1 0 2 0 0 0
.....................................................................................................TAGCACCATTTGAGATCAGT............................................................... 20 1 3 0.33 1 0 0 0 1 0 0
.....................................................................................................TAGCACCATTTGCAATCAGTG.............................................................. 21 1 3 0.33 1 0 0 1 0 0 0
.....................................................................................................TAGCACCAATTCAAATCAGTGTT............................................................ 23 2 3 0.33 1 0 1 0 0 0 0
......................................................................................................AGCATCATTTGAAATCAGT............................................................... 19 1 3 0.33 1 0 0 1 0 0 0
.....................................................................................................TAGCATTATTTGAAATCAGTGTT............................................................ 23 2 6 0.33 2 0 0 2 0 0 0
.....................................................................................................TAGCACCATTTTAAATCAGAGT............................................................. 22 2 3 0.33 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCGGTG.............................................................. 21 1 3 0.33 1 0 0 0 0 0 1
.....................................................................................................TAGCACCATTTGAAATCTGT............................................................... 20 1 3 0.33 1 0 0 1 0 0 0
.....................................................................................................CAGCACCATTTGGAATCAGTGTT............................................................ 23 2 3 0.33 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGGAATCAGTGTAA........................................................... 24 3 3 0.33 1 0 0 0 1 0 0
.....................................................................................................TAGCATCATTTGAAATCAGTGA............................................................. 22 2 3 0.33 1 0 0 0 1 0 0
.....................................................................................................TAACACCATTTGAAATCAGTG.............................................................. 21 1 3 0.33 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCCGTTTT............................................................ 23 2 3 0.33 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATCTGAAATCGGTTTTTT.......................................................... 25 3 3 0.33 1 1 0 0 0 0 0
.....................................................................................................TAGCACTCTTTGAAATCAGTGTT............................................................ 23 2 3 0.33 1 0 0 0 1 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTACG......................................................... 26 3 3 0.33 1 1 0 0 0 0 0
.....................................................................................................TAGCCCCATTTGAAATCAGT............................................................... 20 1 3 0.33 1 0 0 0 1 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGTTAAG......................................................... 26 3 3 0.33 1 1 0 0 0 0 0
.............................................................................................................TTTGAAATCAGTGTT............................................................ 15 0 20 0.30 6 4 2 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGA............................................................... 20 1 4 0.25 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCATT............................................................... 20 1 4 0.25 1 0 0 1 0 0 0
.........................................................................................................ACCATTTGAAATCAGTGT............................................................. 18 0 4 0.25 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAACCAGT............................................................... 20 1 4 0.25 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATCTGAAATCAG................................................................ 19 1 4 0.25 1 0 1 0 0 0 0
.....................................................................................................CGACACCATTTGAAATCAGTGTT............................................................ 23 3 4 0.25 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATCTGAAATCAGTTT............................................................. 22 2 9 0.22 2 1 0 1 0 0 0
.....................................................................................................TAGCACCATTTGAAATCGGAG.............................................................. 21 2 5 0.20 1 0 0 0 1 0 0
.........................................................................................................ACCATTTGAAATCAGTGTTA........................................................... 20 1 5 0.20 1 0 1 0 0 0 0
....................................................................................................TAAGGACCATTTGAAATCAGTGTT............................................................ 24 3 5 0.20 1 0 1 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCAGTGAGA........................................................... 24 3 6 0.17 1 0 0 1 0 0 0
....................................................................................................CTAGCACCATTTGAAA.................................................................... 16 0 6 0.17 1 0 0 0 1 0 0
........................................................................................................TAGCATTTGAAATCAGTGTT............................................................ 20 2 20 0.15 3 2 0 1 0 0 0
..........................................................................................................CCATTTGAAATCAGTGTTA........................................................... 19 1 7 0.14 1 0 1 0 0 0 0
...........................................................................................................CATTTGAAATCAGTGT............................................................. 16 0 9 0.11 1 1 0 0 0 0 0
.....................................................................................................TAGTACCATTTGAAATCGGTAT............................................................. 22 3 12 0.08 1 0 0 1 0 0 0
.....................................................................................................TAGCACCATTTGAAATCGTTAT............................................................. 22 3 14 0.07 1 0 0 0 0 1 0
.....................................................................................................TAGCACCATCTGAAATCA................................................................. 18 1 15 0.07 1 1 0 0 0 0 0
.....................................................................................................CAGCAGCAATTGAAATCAGTGTT............................................................ 23 3 15 0.07 1 1 0 0 0 0 0
.....................................................................................................TAGCACCATTTGAAATCATTT.............................................................. 21 2 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

CCGACCCGGACGGGTAGAGTAGAGGGAAGAAAGAAGTCACTCTGGGAGAAGAAGACCTTCGACCAAAGTGTACCACCGAATCTAAAAAGGTAGAAACATAGATCGTGGTAAACTTTAGTCACAAAATCCTCATTCTTAACGTCGTGTCGGTTTCCGGTTGACGTCTCCTCGTCGACAAGCCCTT

*********************************************.(((((((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).))))))))).))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:43 AM