ID:

ssc-mir-29b-1

 Coordinate:

chr18:19034822-19034902 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.3 -42.3 -42.0
mature

  1. ssc-mir-29b-1  chr18:19034872-19034894 +
  2. ssc-mir-29b-2  chr9:148552489-148552511 +
star

Sense Strand Reads

CCAGCTTATTGTAGGGAAGCACTCCAAAGAAAAACCAGATCCTCAAGCTTCTTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAAAAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCTTGGGGGAGCCCAGCTGCGCTGCCAGTGCCAGAGGGAACGCATGGGACCCGGTCCTG

********************************************..(((((((((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).)))))))))))))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR139076

testes		 SRR1274763

ovary		 SRR1274764

testes
....................................................................................................TAGCACCATTTGAAATCAGTGTT.......................................................... 23 0 2 17390.50 34781 17842 16624 157 65 74 19
....................................................................................................TAGCACCATTTGAAATCAGTGT........................................................... 22 0 2 816.50 1633 783 704 67 64 9 6
....................................................................................................TAGCACCATTTGAAATCAGT............................................................. 20 0 2 132.50 265 53 48 106 55 0 3
....................................................................................................TAGCACCATTTGAAATCAGTG............................................................ 21 0 2 130.00 260 109 115 18 10 3 5
.....................................................................................................AGCACCATTTGAAATCAGTGTT.......................................................... 22 0 2 86.00 172 87 80 2 3 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTA......................................................... 24 1 2 46.50 93 41 48 1 3 0 0
...................................................................................................CTAGCACCATTTGAAATCAGTGTT.......................................................... 24 0 2 41.50 83 42 40 0 0 0 1
....................................................................................................TAGCACCATTTGAAATCAGTGTA.......................................................... 23 1 2 41.00 82 43 28 8 2 1 0
....................................................................................................TAGCACCATTTGAAATCAGTGA........................................................... 22 1 2 31.00 62 29 18 7 7 0 1
....................................................................................................TAGCACCATCTGAAATCAGTGTT.......................................................... 23 1 2 30.00 60 29 31 0 0 0 0
...................................................................................................CTAGCACCATTTGAAATCAGTG............................................................ 22 0 2 25.00 50 29 15 2 1 1 2
....................................................................................................CAGCACCATTTGAAATCAGTGTT.......................................................... 23 1 2 24.50 49 24 24 1 0 0 0
...................................................................................................CTAGCACCATTTGAAATCAGT............................................................. 21 0 2 18.00 36 8 8 2 10 4 4
...........................................................GCTGGTTTCATATGGTGGTTTAG................................................................................................... 23 0 1 15.00 15 3 9 3 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGCGTT.......................................................... 23 1 2 14.00 28 13 14 0 1 0 0
....................................................................................................TAGCACCATTTGAAATTAGTGTT.......................................................... 23 1 2 13.50 27 14 13 0 0 0 0
....................................................................................................TAGCACCATTTGGAATCAGTGTT.......................................................... 23 1 2 12.50 25 9 16 0 0 0 0
....................................................................................................TAGCGCCATTTGAAATCAGTGTT.......................................................... 23 1 2 10.50 21 9 12 0 0 0 0
...................................................................................................CTAGCACCATTTGAAATCAGTGT........................................................... 23 0 2 10.00 20 12 6 0 0 1 1
........................................................................................................ACCATTTGAAATCAGTGTT.......................................................... 19 0 2 9.50 19 12 7 0 0 0 0
....................................................................................................TAGCACCATTCGAAATCAGTGTT.......................................................... 23 1 2 9.50 19 7 12 0 0 0 0
...........................................................GCTGGTTTCATATGGTGGTTTAGA.................................................................................................. 24 0 1 9.00 9 3 3 3 0 0 0
....................................................................................................TAGCATCATTTGAAATCAGTGTT.......................................................... 23 1 2 8.50 17 7 9 0 1 0 0
....................................................................................................TAGCACCATTTGAGATCAGTGTT.......................................................... 23 1 2 8.50 17 11 6 0 0 0 0
....................................................................................................TAGCACTATTTGAAATCAGTGTT.......................................................... 23 1 2 8.00 16 7 9 0 0 0 0
...................................................................................................CTAGCACCATTTGAAATCAGTGA........................................................... 23 1 2 7.50 15 5 6 0 3 1 0
....................................................................................................TGGCACCATTTGAAATCAGTGTT.......................................................... 23 1 2 7.50 15 11 4 0 0 0 0
....................................................................................................TAGCACCATTTAAAATCAGTGTT.......................................................... 23 1 2 7.00 14 7 6 1 0 0 0
......................................................................................................GCACCATTTGAAATCAGTGTT.......................................................... 21 0 2 7.00 14 6 7 1 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTG......................................................... 24 1 2 6.50 13 5 6 1 0 1 0
....................................................................................................TAGCACCGTTTGAAATCAGTGTT.......................................................... 23 1 2 6.50 13 8 5 0 0 0 0
....................................................................................................TAGCACCACTTGAAATCAGTGTT.......................................................... 23 1 2 6.50 13 7 6 0 0 0 0
....................................................................................................AAGCACCATTTGAAATCAGTGTT.......................................................... 23 1 2 5.50 11 3 8 0 0 0 0
....................................................................................................TAGTACCATTTGAAATCAGTGTT.......................................................... 23 1 2 5.50 11 6 5 0 0 0 0
....................................................................................................TAGCACCATTTGAAACCAGTGTT.......................................................... 23 1 2 5.00 10 5 5 0 0 0 0
....................................................................................................TACCACCATTTGAAATCAGTGTT.......................................................... 23 1 2 5.00 10 7 3 0 0 0 0
....................................................................................................TAGCACCATTTGAAGTCAGTGTT.......................................................... 23 1 2 5.00 10 4 5 1 0 0 0
.....................................................................................................AGCACCATTTGAAATCAGTGT........................................................... 21 0 2 5.00 10 5 5 0 0 0 0
....................................................................................................TAGCAGCATTTGAAATCAGTGTT.......................................................... 23 1 2 5.00 10 0 4 3 3 0 0
....................................................................................................TAACACCATTTGAAATCAGTGTT.......................................................... 23 1 2 5.00 10 3 6 1 0 0 0
...................................................................................TTTAAAAAGTGATTGTC................................................................................. 17 0 2 5.00 10 1 0 9 0 0 0
.........................................................................................................CCATTTGAAATCAGTGTT.......................................................... 18 0 2 4.50 9 6 3 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTC.......................................................... 23 1 2 4.00 8 3 5 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGAGTT.......................................................... 23 1 2 4.00 8 3 5 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTC......................................................... 24 0 1 4.00 4 4 0 0 0 0 0
...........................................................GCTGGTTTCATATGGTGGTTTA.................................................................................................... 22 0 1 4.00 4 2 2 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAG.............................................................. 19 0 2 4.00 8 5 1 2 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGGGTT.......................................................... 23 1 2 4.00 8 5 3 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTAGT....................................................... 26 2 1 4.00 4 3 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTGA........................................................ 25 2 2 3.50 7 3 4 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGCT.......................................................... 23 1 2 3.50 7 4 3 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGC........................................................... 22 1 2 3.50 7 3 1 1 2 0 0
....................................................................................................TAGCACCATCTGAAATCGGTGTT.......................................................... 23 2 3 3.33 10 6 4 0 0 0 0
...................................................................................................ATAGCACCATTTGAAATCAGTGTT.......................................................... 24 1 2 3.00 6 5 1 0 0 0 0
....................................................................................................TATCACCATTTGAAATCAGTGTT.......................................................... 23 1 2 3.00 6 4 2 0 0 0 0
...........................................................GCTGGTTTCATATGGTGGGTTAG................................................................................................... 23 1 1 3.00 3 2 1 0 0 0 0
....................................................................................................TAGCTCCATTTGAAATCAGTGTT.......................................................... 23 1 2 3.00 6 5 1 0 0 0 0
......................................................................................................GCACCATTTGAAATCAGTGTTA......................................................... 22 1 2 3.00 6 2 3 0 1 0 0
....................................................................................................TAGCACCATTTGAAATCAGTATT.......................................................... 23 1 2 3.00 6 2 4 0 0 0 0
...........................................................GCTGGTTTCATATGGTGGTT...................................................................................................... 20 0 1 3.00 3 1 2 0 0 0 0
...................................................................................TTTAAAAAGTGATTGTCT................................................................................ 18 0 1 3.00 3 0 0 3 0 0 0
..........................................................................................................CATTTGAAATCAGTGTT.......................................................... 17 0 5 2.80 14 10 4 0 0 0 0
....................................................................................................TAGCACCATATGAAATCAGTGTT.......................................................... 23 1 2 2.50 5 5 0 0 0 0 0
....................................................................................................TAGCACCATTAGAAATCAGTGTT.......................................................... 23 1 2 2.50 5 3 2 0 0 0 0
....................................................................................................TAGCACCATTTGTAATCAGTGTT.......................................................... 23 1 2 2.50 5 3 2 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCATTGTT.......................................................... 23 1 2 2.50 5 2 3 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCGGTGTT.......................................................... 23 1 2 2.50 5 3 2 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTTTT.......................................................... 23 1 2 2.50 5 3 2 0 0 0 0
...........................................................GCTGGTTTCATATGGTGGTTTAGAT................................................................................................. 25 0 1 2.00 2 0 0 2 0 0 0
.....................................................................................................AGCACCATTTGAAATCAGT............................................................. 19 0 2 2.00 4 0 0 3 1 0 0
....................................................................................................TAGCACCATTGGAAATCAGTGTT.......................................................... 23 1 2 2.00 4 2 2 0 0 0 0
....................................................................................................TAGCACCATCTGAAATCAGTGT........................................................... 22 1 2 2.00 4 2 2 0 0 0 0
....................................................................................................TAGCACCATTTTAAATCAGTGTT.......................................................... 23 1 2 2.00 4 4 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGGT.......................................................... 23 1 2 2.00 4 2 1 0 1 0 0
....................................................................................................TAGCACCATTTGAAATCAGTT............................................................ 21 1 4 2.00 8 1 3 3 1 0 0
....................................................................................................TAGCACCCTTTGAAATCAGTGTT.......................................................... 23 1 2 2.00 4 2 2 0 0 0 0
....................................................................................................TAGCACAATTTGAAATCAGTGTT.......................................................... 23 1 2 2.00 4 3 1 0 0 0 0
....................................................................................................TAGCACCATTTGCAATCAGTGTT.......................................................... 23 1 2 2.00 4 3 1 0 0 0 0
...........................................................GCTGGTTTCATATGGTGGTTT..................................................................................................... 21 0 1 2.00 2 0 1 1 0 0 0
...................................................................................TTTAAATAGTGATTGTC................................................................................. 17 1 20 1.90 38 38 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATC................................................................ 17 0 4 1.75 7 1 0 3 1 1 1
...........................................................................................................ATTTGAAATCAGTGTT.......................................................... 16 0 11 1.55 17 10 7 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTA............................................................ 21 1 2 1.50 3 0 1 1 1 0 0
....................................................................................................TAGCACCATTTGAAATAAGTGTT.......................................................... 23 1 2 1.50 3 1 2 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCGGTGT........................................................... 22 1 2 1.50 3 2 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTAA......................................................... 24 2 2 1.50 3 2 0 0 1 0 0
....................................................................................................TAGCACGATTTGAAATCAGTGTT.......................................................... 23 1 2 1.50 3 3 0 0 0 0 0
....................................................................................................CAGCACCATTTGAAATCAGTGT........................................................... 22 1 2 1.50 3 3 0 0 0 0 0
....................................................................................................CAGCAGCATTTGAAATCAGTGTT.......................................................... 23 2 2 1.50 3 1 2 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTTT........................................................... 22 1 2 1.50 3 0 1 1 1 0 0
...................................................................................................CTAGCACCATTTGAAATCAG.............................................................. 20 0 2 1.50 3 1 0 0 0 1 1
....................................................................................................TTGCACCATTTGAAATCAGTGTT.......................................................... 23 1 2 1.50 3 2 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAGTCAGTGT........................................................... 22 1 2 1.50 3 0 2 0 1 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGAT.......................................................... 23 1 2 1.50 3 1 2 0 0 0 0
...................................................................................................CTAGCACCATTTGAAATCAGTT............................................................ 22 1 3 1.33 4 0 2 1 0 1 0
....................................................................................................TAGCACCATTTGAAATCA............................................................... 18 0 3 1.33 4 0 2 0 2 0 0
....................................................................................................TAGCACCATTTGAAA.................................................................. 15 0 18 1.28 23 1 1 17 4 0 0
..................................................................................................CATAGCACCATTTGAAATCAGTGTT.......................................................... 25 2 2 1.00 2 2 0 0 0 0 0
...........................................................GCTGGTTTCATATGGTGGGTTAGA.................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCACTGTT.......................................................... 23 1 3 1.00 3 1 2 0 0 0 0
..........................................................CGCTGGTTTCATATGGTGGTTTAG................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAATTCAGTGTT.......................................................... 23 1 2 1.00 2 0 2 0 0 0 0
....................................................................................................TAGCAACATTTGAAATCAGTGTT.......................................................... 23 1 2 1.00 2 1 1 0 0 0 0
...................................................................................................CTAGCACCATTTGAAATCAGTA............................................................ 22 1 2 1.00 2 0 2 0 0 0 0
....................................................................................................TAGCACCATTTGAAAACAGTGTT.......................................................... 23 1 2 1.00 2 1 1 0 0 0 0
...........................................................GCTGGTTTCATATGGTGGGTTAGAAA................................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................TAGGACCATTTGAAATCAGTGTT.......................................................... 23 1 2 1.00 2 1 1 0 0 0 0
....................................................................................................TAGCACCTTTTGAAATCAGTGTT.......................................................... 23 1 2 1.00 2 2 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTAAT....................................................... 26 2 1 1.00 1 1 0 0 0 0 0
...........................................................GCTGGTTTCATATGGTGGTTTT.................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTATT....................................................... 26 1 1 1.00 1 0 1 0 0 0 0
...........................................................GCTGGTTTCATATGGTGGGT...................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGAA.......................................................... 23 2 2 1.00 2 2 0 0 0 0 0
...........................................................GCTGGTTTCATATGGTGGT....................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTCT........................................................ 25 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCTGTGTT.......................................................... 23 1 2 1.00 2 2 0 0 0 0 0
....................................................................................................TGGCACCATTTGAAATCAGTGT........................................................... 22 1 2 1.00 2 2 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAATGTT.......................................................... 23 1 2 1.00 2 2 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATGAGTGTT.......................................................... 23 1 2 1.00 2 2 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTCA........................................................ 25 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................GAGCACCATTTGAAATCAGTGTT.......................................................... 23 1 2 1.00 2 2 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGCGT........................................................... 22 1 2 1.00 2 1 1 0 0 0 0
....................................................................................................TAGCACCATCTGAAATCAGT............................................................. 20 1 4 0.75 3 2 0 0 1 0 0
....................................................................................................TAGCACCATTTGAAATCAGTCC........................................................... 22 2 4 0.75 3 1 2 0 0 0 0
...................................................................................TTTAAATAGTGATTGTCT................................................................................ 18 1 13 0.69 9 7 2 0 0 0 0
....................................................................................................TAGGACCATTTGAAATCAGT............................................................. 20 1 3 0.67 2 0 0 2 0 0 0
....................................................................................................TAGCACCATTTGAAATCGGTAT........................................................... 22 2 3 0.67 2 0 0 1 1 0 0
....................................................................................................TAGCACCATTTGAAATCAGTC............................................................ 21 1 3 0.67 2 0 1 0 0 0 1
....................................................................................................TAGCACCATTTGAAATCAA.............................................................. 19 1 3 0.67 2 2 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTCCA....................................................... 26 2 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCGTTGTT.......................................................... 23 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTAT........................................................ 25 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGCACCATTTCAAATCAGTGTT.......................................................... 23 1 2 0.50 1 0 1 0 0 0 0
..............................................................................................ACGATCTAGCACCATTTGAAATCAGTGTT.......................................................... 29 3 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGCAATCAGTGT........................................................... 22 1 2 0.50 1 0 0 0 1 0 0
.................................................................................................TTATAGCACCATTTGAAATCAGTGTT.......................................................... 26 2 2 0.50 1 0 1 0 0 0 0
..................................................................................................ACTAGCACCATTTGAAATCAGTGA........................................................... 24 2 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCACTTGAAATCAGTG............................................................ 21 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................CTAGCACCATTTGAAATCAGTGTA.......................................................... 24 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAATTAGTGTTA......................................................... 24 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATTAGTGT........................................................... 22 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGCAGCATTTGAAATCAGT............................................................. 20 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................CTAGCACCATTTGAAATCAGTGTTA......................................................... 25 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTCGAAATCAGTGT........................................................... 22 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGCACCATTTGAAATCAGTGT........................................................... 21 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCTCCATTTGAAATCAGCGTT.......................................................... 23 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................AGCATCATTTGAAATCAGTGTT.......................................................... 22 1 2 0.50 1 0 0 1 0 0 0
....................................................................................................TAGCACTATTGGAAATCAGTGTT.......................................................... 23 2 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAGATCAGTGT........................................................... 22 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGCACCATATGAAATCAGTGT........................................................... 22 1 2 0.50 1 1 0 0 0 0 0
...........................................................GCTGGTTTCATATAGTGGTT...................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTAGA........................................................ 25 3 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGAACCATTTGAAATCAGTGT........................................................... 22 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCCGTGTT.......................................................... 23 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAACTCAGTGTT.......................................................... 23 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGCGTTA......................................................... 24 2 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGACATCAGTGT........................................................... 22 1 2 0.50 1 0 0 1 0 0 0
......................................................................................................TCACCATTTGAAATCAGTGTT.......................................................... 21 1 2 0.50 1 0 1 0 0 0 0
...................................................................................................CTAGCACCATTTGAAATCAGTGTTAA........................................................ 26 2 2 0.50 1 0 1 0 0 0 0
....................................................................................................ATGCACCATTTGAAATCAGTGTT.......................................................... 23 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGCGCCATTTGAAATCAGTGT........................................................... 22 1 2 0.50 1 0 0 1 0 0 0
....................................................................................................TAGCGCCATTTGAAATCAGTGA........................................................... 22 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTGG........................................................ 25 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCCGTGT........................................................... 22 1 2 0.50 1 0 1 0 0 0 0
..................................................................................................AGTAGCACCATTTGAAATCAGTGTT.......................................................... 25 2 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAGATCAGTG............................................................ 21 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCATGTGAAATCAGTGT........................................................... 22 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................AGCACCATTTGAAATCAGTGTTA......................................................... 23 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTAG......................................................... 24 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................CTAGCACCATTTGAAATCAGTAT........................................................... 23 1 2 0.50 1 0 0 0 1 0 0
....................................................................................................TAGCACCATTTGAGATCAGCGTT.......................................................... 23 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGAACCATTTGAAATCAGT............................................................. 20 1 2 0.50 1 0 0 0 1 0 0
.....................................................................................................AGCACTATTTGAAATCAGTGTTA......................................................... 23 2 2 0.50 1 0 0 1 0 0 0
.....................................................................................................AGCACCATTTGAAATCAGTGTTAA........................................................ 24 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGAACCATTTGAAATCAGTGTT.......................................................... 23 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTAA........................................................ 25 2 2 0.50 1 0 0 1 0 0 0
................................................................................................ATTCTAGCACCATTTGAAATCAGTGA........................................................... 26 3 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGCCCCCTTTGAAATCAGTGTT.......................................................... 23 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................TAGCTCCATTTGAAATCAGT............................................................. 20 1 2 0.50 1 0 0 0 1 0 0
......................................................................................................GCACCATTTGAAATCAGTGTA.......................................................... 21 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................AAGCACCATTTGAAATCAGTGCT.......................................................... 23 2 2 0.50 1 0 1 0 0 0 0
...................................................................................................CTAGCACCATTTGAAATCAGTC............................................................ 22 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................CTAGCACCATTTGAAATCAGTGG........................................................... 23 1 2 0.50 1 0 0 0 0 1 0
...................................................................................................CTAGCACCATTCGAAATCAGTGTT.......................................................... 24 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................TTAGCACCATTTGAAATCAGTGT........................................................... 23 1 2 0.50 1 0 0 0 1 0 0
.......................................................................................................CACCATTTGAAATCAGTGTT.......................................................... 20 0 2 0.50 1 0 1 0 0 0 0
....................................................................................................TAGCACCCTTTGAAATCAGT............................................................. 20 1 2 0.50 1 0 0 1 0 0 0
...................................................................................................CTAGCACCATTTGAAATCAGTGAA.......................................................... 24 2 2 0.50 1 0 0 0 1 0 0
....................................................................................................TAGCACCATTTGAAAT................................................................. 16 0 7 0.43 3 1 0 2 0 0 0
....................................................................................................TAGCATTATTTGAAATCAGTGTT.......................................................... 23 2 6 0.33 2 0 0 2 0 0 0
....................................................................................................TAGCACCATTTGAGATCAGT............................................................. 20 1 3 0.33 1 0 0 0 1 0 0
....................................................................................................TAGCACCATTTGAAATCCGTTTT.......................................................... 23 2 3 0.33 1 1 0 0 0 0 0
.....................................................................................................AGCATCATTTGAAATCAGT............................................................. 19 1 3 0.33 1 0 0 1 0 0 0
....................................................................................................TAGCACCATTTGAAATCTGT............................................................. 20 1 3 0.33 1 0 0 1 0 0 0
....................................................................................................TAGCATCATTTGAAATCAGTGA........................................................... 22 2 3 0.33 1 0 0 0 1 0 0
....................................................................................................TAGCCCCATTTGAAATCAGT............................................................. 20 1 3 0.33 1 0 0 0 1 0 0
....................................................................................................TAGCACTCTTTGAAATCAGTGTT.......................................................... 23 2 3 0.33 1 0 0 0 1 0 0
....................................................................................................TAGCACCATTTTAAATCAGAGT........................................................... 22 2 3 0.33 1 0 1 0 0 0 0
....................................................................................................TAGCACCAATTCAAATCAGTGTT.......................................................... 23 2 3 0.33 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGGAATCAGTGTAA......................................................... 24 3 3 0.33 1 0 0 0 1 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGTTAAG....................................................... 26 3 3 0.33 1 1 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCGGTG............................................................ 21 1 3 0.33 1 0 0 0 0 0 1
....................................................................................................TAGCACCATTTGAAATCAGTGTTACG....................................................... 26 3 3 0.33 1 1 0 0 0 0 0
....................................................................................................CAGCACCATTTGGAATCAGTGTT.......................................................... 23 2 3 0.33 1 0 1 0 0 0 0
....................................................................................................TAACACCATTTGAAATCAGTG............................................................ 21 1 3 0.33 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGCAATCAGTG............................................................ 21 1 3 0.33 1 0 0 1 0 0 0
............................................................................................................TTTGAAATCAGTGTT.......................................................... 15 0 20 0.30 6 4 2 0 0 0 0
....................................................................................................CGACACCATTTGAAATCAGTGTT.......................................................... 23 3 4 0.25 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCATT............................................................. 20 1 4 0.25 1 0 0 1 0 0 0
........................................................................................................ACCATTTGAAATCAGTGT........................................................... 18 0 4 0.25 1 1 0 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCAGA............................................................. 20 1 4 0.25 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAACCAGT............................................................. 20 1 4 0.25 1 1 0 0 0 0 0
....................................................................................................TAGCACCATCTGAAATCAG.............................................................. 19 1 4 0.25 1 0 1 0 0 0 0
..................................................................................ATTTAAATAGTGATTGTCT................................................................................ 19 1 4 0.25 1 0 1 0 0 0 0
....................................................................................................TAGCACCATCTGAAATCAGTTT........................................................... 22 2 9 0.22 2 1 0 1 0 0 0
...................................................................................................TAAGGACCATTTGAAATCAGTGTT.......................................................... 24 3 5 0.20 1 0 1 0 0 0 0
....................................................................................................TAGCACCATTTGAAATCGGAG............................................................ 21 2 5 0.20 1 0 0 0 1 0 0
........................................................................................................ACCATTTGAAATCAGTGTTA......................................................... 20 1 5 0.20 1 0 1 0 0 0 0
...................................................................................................CTAGCACCATTTGAAA.................................................................. 16 0 6 0.17 1 0 0 0 1 0 0
....................................................................................................TAGCACCATTTGAAATCAGTGAGA......................................................... 24 3 6 0.17 1 0 0 1 0 0 0
.......................................................................................................TAGCATTTGAAATCAGTGTT.......................................................... 20 2 20 0.15 3 2 0 1 0 0 0
.........................................................................................................CCATTTGAAATCAGTGTTA......................................................... 19 1 7 0.14 1 0 1 0 0 0 0
..........................................................................................................CATTTGAAATCAGTGT........................................................... 16 0 9 0.11 1 1 0 0 0 0 0
....................................................................................................TAGTACCATTTGAAATCGGTAT........................................................... 22 3 12 0.08 1 0 0 1 0 0 0
....................................................................................................TAGCACCATTTGAAATCGTTAT........................................................... 22 3 14 0.07 1 0 0 0 0 1 0
....................................................................................................CAGCAGCAATTGAAATCAGTGTT.......................................................... 23 3 15 0.07 1 1 0 0 0 0 0
....................................................................................................TAGCACCATCTGAAATCA............................................................... 18 1 15 0.07 1 1 0 0 0 0 0
...................................................................................TTTAAAAAGTGATTGTCTT............................................................................... 19 1 17 0.06 1 0 0 1 0 0 0
....................................................................................................TAGCACCATTTGAAATCATTT............................................................ 21 2 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

GGTCGAATAACATCCCTTCGTGAGGTTTCTTTTTGGTCTAGGAGTTCGAAGAAGTCCTTCGACCAAAGTATACCACCAAATCTAAATTTTTCACTAACAGATCGTGGTAAACTTTAGTCACAAGAACCCCCTCGGGTCGACGCGACGGTCACGGTCTCCCTTGCGTACCCTGGGCCAGGAC

*******************************************..(((((((((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).)))))))))))))....******************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:31 AM