ID:

ssc-mir-29a

Coordinate:

chr18:19035225-19035310 +

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

ATTTGTTCATCTCTGGGCTCTTCGCAGTCCTCACGTCCTCCTTCCCGTGACCCCTTAGAGGATGACTGATTTCTTTTGGTGTTCAGAGTCAATATAATTTTCTAGCACCATCTGAAATCGGTTATAATGATTGGGGAAGAGCACCGTGCCACCGACTAACGAGAGAAAATACACTGGGGACCTTTG

*************************************************.((((.......((((((((((((...(((((((.((((...........)))))))))))...)))))))))))).......))))...***********************************************
Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary
SRR066810

testes
SRR139075

testes
SRR139076

testes
SRR1274763

ovary
SRR1274764

testes
......................................................................................................TAGCACCATCTGAAATCGGTTA.............................................................. 22 0 1 222922.00 222922 47929 47571 103442 23162 555 263
......................................................................................................TAGCACCATCTGAAATCGGTT............................................................... 21 0 1 207902.00 207902 100053 94869 8929 2973 740 338
.....................................................................................................CTAGCACCATCTGAAATCGGTT............................................................... 22 0 1 26782.00 26782 12014 13280 691 504 174 119
......................................................................................................TAGCACCATCTGAAATCGGT................................................................ 20 0 1 6424.00 6424 3046 2579 323 105 241 130
......................................................................................................TAGCACCATCTGAAATCGGTTT.............................................................. 22 1 1 5184.00 5184 1367 1333 1765 654 48 17
.....................................................................................................CTAGCACCATCTGAAATCGGTTA.............................................................. 23 0 1 4795.00 4795 1695 1996 630 435 21 18
......................................................................................................TAGCACCATCTGAAATCGGTTAA............................................................. 23 1 1 3764.00 3764 886 754 1429 587 87 21
......................................................................................................TAGCACCATCTGAAATCGGTTAT............................................................. 23 0 1 3690.00 3690 1150 1085 1052 330 54 19
......................................................................................................TAGCACCATCTGAAATCGG................................................................. 19 0 1 1718.00 1718 654 523 436 57 32 16
.......................................................................................................AGCACCATCTGAAATCGGTTA.............................................................. 21 0 1 1710.00 1710 222 246 935 306 1 0
......................................................................................................TAGCACCATCTGAAATCGGTA............................................................... 21 1 1 1344.00 1344 677 619 34 6 7 1
.......................................................................................................AGCACCATCTGAAATCGGTT............................................................... 20 0 1 1146.00 1146 555 506 58 25 1 1
.....................................................................................................CTAGCACCATCTGAAATCGGT................................................................ 21 0 1 1037.00 1037 454 427 36 33 53 34
.....................................................................................................CTAGCACCATCTGAAATCGGTTT.............................................................. 23 1 1 684.00 684 262 274 70 50 22 6
......................................................................................................TAGCACCATCTGAAATCGGGTA.............................................................. 22 1 1 525.00 525 27 20 434 44 0 0
..........................................................................................................ACCATCTGAAATCGGTTA.............................................................. 18 0 1 495.00 495 25 27 391 51 1 0
......................................................................................................TAGCACTATCTGAAATCGGTTA.............................................................. 22 1 1 484.00 484 24 20 352 86 1 1
......................................................................................................TAGCACCATCTGACATCGGTTA.............................................................. 22 1 1 446.00 446 1 0 350 95 0 0
......................................................................................................TAGCATCATCTGAAATCGGTTA.............................................................. 22 1 1 356.00 356 16 21 261 58 0 0
......................................................................................................TAGCACCATCTGCAATCGGTTA.............................................................. 22 1 1 338.00 338 3 1 277 57 0 0
................................................................ACTGATTTCTTTTGGTGTTCAG.................................................................................................... 22 0 1 337.00 337 185 132 13 3 2 2
......................................................................................................TAGCACCATCTGAAATCGGTTC.............................................................. 22 1 1 318.00 318 44 43 187 35 8 1
......................................................................................................TAGCACCATCTGAAATCGGTAA.............................................................. 22 1 1 298.00 298 20 24 123 110 8 13
......................................................................................................TAGTACCATCTGAAATCGGTTA.............................................................. 22 1 1 275.00 275 20 14 198 43 0 0
......................................................................................................TAGCACCATCTGAACTCGGTTA.............................................................. 22 1 1 271.00 271 0 0 220 51 0 0
......................................................................................................TAGCACTATCTGAAATCGGTT............................................................... 21 1 1 242.00 242 76 52 91 22 1 0
......................................................................................................CAGCACCATCTGAAATCGGTT............................................................... 21 1 1 241.00 241 126 96 17 2 0 0
......................................................................................................TAGCATTATCTGAAATCGGTTA.............................................................. 22 2 1 238.00 238 8 0 197 33 0 0
.....................................................................................................CTAGCACCATCTGAAATCGGTA............................................................... 22 1 1 230.00 230 114 97 4 3 3 9
......................................................................................................TAGCACCATCTGAAATCGGCTA.............................................................. 22 1 1 223.00 223 20 15 115 73 0 0
......................................................................................................TAGCACCATCTGAAATCGGCT............................................................... 21 1 1 221.00 221 96 94 16 15 0 0
................................................................ACTGATTTCTTTTGGTGTTCAGA................................................................................................... 23 0 1 219.00 219 109 93 8 5 2 2
......................................................................................................TAGCATCATCTGAAATCGGTT............................................................... 21 1 1 219.00 219 50 40 108 21 0 0
......................................................................................................TAGCACCATCCGAAATCGGTT............................................................... 21 1 1 213.00 213 109 94 9 1 0 0
........................................................................................................GCACCATCTGAAATCGGTTA.............................................................. 20 0 1 200.00 200 25 19 138 18 0 0
......................................................................................................CAGCACCATCTGAAATCGGTTA.............................................................. 22 1 1 197.00 197 41 37 98 21 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTG.............................................................. 22 1 1 187.00 187 30 18 70 28 32 9
................................................................ACTGATTTCTTTTGGTGTTCA..................................................................................................... 21 0 1 187.00 187 96 67 20 3 0 1
......................................................................................................TAGCACCATCTGAAATCGGGT............................................................... 21 1 1 173.00 173 70 42 53 8 0 0
......................................................................................................TAGCACCATCTGGAATCGGTTA.............................................................. 22 1 1 165.00 165 14 29 100 22 0 0
......................................................................................................TAGCACCATCCGAAATCGGTTA.............................................................. 22 1 1 157.00 157 37 32 69 19 0 0
.....................................................................................................CTAGCACCATCTGAAATCGGTTAT............................................................. 24 0 1 146.00 146 69 57 13 5 2 0
......................................................................................................TAGCACCATCTGAAATCGGTTTT............................................................. 23 1 1 144.00 144 60 47 30 5 2 0
......................................................................................................TAGCACCATCTGAAATTGGTTA.............................................................. 22 1 1 143.00 143 26 22 78 17 0 0
.....................................................................................................CTAGCACCATCTGAAATCGG................................................................. 20 0 1 137.00 137 41 58 9 6 12 11
......................................................................................................TAGCACCATCTGAAATCG.................................................................. 18 0 1 137.00 137 70 55 7 1 4 0
......................................................................................................TAGCACCATCTGGAATCGGTT............................................................... 21 1 1 136.00 136 65 55 12 4 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTAC............................................................. 23 1 1 127.00 127 59 50 8 2 6 2
........................................................................................................GCACCATCTGAAATCGGTT............................................................... 19 0 1 118.00 118 57 53 7 1 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTAG............................................................. 23 1 1 109.00 109 23 16 20 6 32 12
......................................................................................................TAGCACCATCTGAAATTGGTT............................................................... 21 1 1 109.00 109 57 47 4 1 0 0
......................................................................................................AAGCACCATCTGAAATCGGTTA.............................................................. 22 1 1 107.00 107 18 22 46 21 0 0
..........................................................................................................ACCATCTGAAATCGGTT............................................................... 17 0 2 105.00 210 108 61 33 5 1 2
......................................................................................................TAGCACCATCTGAGATCGGTTA.............................................................. 22 1 1 105.00 105 19 18 50 18 0 0
......................................................................................................TGGCACCATCTGAAATCGGTT............................................................... 21 1 1 104.00 104 57 46 1 0 0 0
......................................................................................................TAGTACCATCTGAAATCGGTT............................................................... 21 1 1 102.00 102 36 31 31 4 0 0
......................................................................................................TAGCACCACCTGAAATCGGTTA.............................................................. 22 1 1 100.00 100 15 14 58 13 0 0
......................................................................................................TAGCACCATCTGAAATCGGA................................................................ 20 1 1 99.00 99 54 20 7 0 13 5
......................................................................................................TCGCACCATCTGAAATCGGTTA.............................................................. 22 1 1 98.00 98 2 2 77 17 0 0
......................................................................................................TAGCACCATCTGAAGTCGGTTA.............................................................. 22 1 1 96.00 96 15 10 63 8 0 0
......................................................................................................TAGCGCCATCTGAAATCGGTT............................................................... 21 1 1 95.00 95 52 32 10 0 1 0
......................................................................................................TAGCACCATCTGAAATCAGTTA.............................................................. 22 1 1 94.00 94 23 21 40 10 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTATT............................................................ 24 1 1 91.00 91 42 35 9 4 1 0
......................................................................................................TATCACCATCTGAAATCGGTTA.............................................................. 22 1 1 91.00 91 7 6 58 20 0 0
......................................................................................................TAGCACCATCTGAAATCGGATA.............................................................. 22 1 1 91.00 91 10 5 56 20 0 0
......................................................................................................TAGCGCCATCTGAAATCGGTTA.............................................................. 22 1 1 90.00 90 13 15 49 13 0 0
......................................................................................................TAGCAGCATCTGAAATCGGTTA.............................................................. 22 1 1 87.00 87 1 5 75 6 0 0
......................................................................................................TAGCACCATCTGAAACCGGTTA.............................................................. 22 1 1 85.00 85 16 14 41 14 0 0
......................................................................................................TAACACCATCTGAAATCGGTTA.............................................................. 22 1 1 83.00 83 14 11 48 10 0 0
......................................................................................................TAGCCCCATCTGAAATCGGTTA.............................................................. 22 1 1 82.00 82 1 0 69 12 0 0
......................................................................................................TAGCACCATCTAAAATCGGTT............................................................... 21 1 1 82.00 82 37 40 4 0 1 0
......................................................................................................TAGCACCATCTAAAATCGGTTA.............................................................. 22 1 1 80.00 80 19 16 36 9 0 0
......................................................................................................TAGCACCATCTGAAATCGGTCA.............................................................. 22 1 1 80.00 80 13 13 47 7 0 0
......................................................................................................AAGCACCATCTGAAATCGGTT............................................................... 21 1 1 79.00 79 36 35 7 1 0 0
......................................................................................................TAGCACCCTCTGAAATCGGTTA.............................................................. 22 1 1 77.00 77 2 1 58 16 0 0
......................................................................................................TAGCACCATCTGAAATCGTTTA.............................................................. 22 1 1 77.00 77 3 1 58 15 0 0
......................................................................................................TAGCACCATCTGAGATCGGTT............................................................... 21 1 1 76.00 76 44 26 6 0 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTAAA............................................................ 24 1 1 75.00 75 19 26 11 10 7 2
......................................................................................................TAGCACCATCTGAAATCAGTT............................................................... 21 1 1 74.00 74 36 29 6 3 0 0
......................................................................................................TGGCACCATCTGAAATCGGTTA.............................................................. 22 1 1 73.00 73 16 26 23 8 0 0
......................................................................................................TACCACCATCTGAAATCGGTTA.............................................................. 22 1 1 69.00 69 10 9 38 12 0 0
......................................................................................................TAGCACCACCTGAAATCGGTT............................................................... 21 1 1 68.00 68 34 30 4 0 0 0
......................................................................................................TAGCACCGTCTGAAATCGGTTA.............................................................. 22 1 1 67.00 67 13 4 44 6 0 0
......................................................................................................TAGCACCATCTGAAGTCGGTT............................................................... 21 1 1 65.00 65 31 25 8 1 0 0
.....................................................................................................ATAGCACCATCTGAAATCGGTT............................................................... 22 1 1 65.00 65 32 24 4 5 0 0
......................................................................................................TAGCACCATCTGCAATCGGTT............................................................... 21 1 1 63.00 63 21 10 24 8 0 0
......................................................................................................TAACACCATCTGAAATCGGTT............................................................... 21 1 1 63.00 63 26 30 6 1 0 0
......................................................................................................TAGCACCATCTGAAATCGGAT............................................................... 21 1 1 62.00 62 26 29 3 4 0 0
......................................................................................................TAGCACCATCTGAAATCTGTTA.............................................................. 22 1 1 61.00 61 5 5 44 7 0 0
......................................................................................................TAGCACCATCTGAAATCGGTC............................................................... 21 1 1 60.00 60 22 33 3 2 0 0
......................................................................................................TAGCACCATCTGACATCGGTT............................................................... 21 1 1 58.00 58 5 7 34 12 0 0
......................................................................................................TAGCACCGTCTGAAATCGGTT............................................................... 21 1 1 57.00 57 25 26 5 1 0 0
....................................................................................................CCTAGCACCATCTGAAATCGGTT............................................................... 23 1 1 57.00 57 34 23 0 0 0 0
......................................................................................................TAGCACCATCTGAAACCGGTT............................................................... 21 1 1 56.00 56 32 21 2 1 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTAGA............................................................ 24 1 1 54.00 54 28 20 2 0 3 1
.....................................................................................................CTAGCACCATCTGAAATCGGTTAA............................................................. 24 1 1 54.00 54 21 15 5 12 0 1
......................................................................................................TAGCACCTTCTGAAATCGGTTA.............................................................. 22 1 1 53.00 53 6 2 33 12 0 0
.....................................................................................................ATAGCACCATCTGAAATCGGTTA.............................................................. 23 1 1 53.00 53 7 11 19 16 0 0
......................................................................................................TAGCACCATCTGTAATCGGTTA.............................................................. 22 1 1 48.00 48 6 6 24 12 0 0
......................................................................................................TAGCAGCATCTGAAATCGGTT............................................................... 21 1 1 46.00 46 9 14 19 4 0 0
......................................................................................................TAGCACCATCTGAACTCGGTT............................................................... 21 1 1 46.00 46 8 4 26 8 0 0
......................................................................................................TAGCACCATCTTAAATCGGTTA.............................................................. 22 1 1 44.00 44 4 4 25 11 0 0
......................................................................................................TAGCACCATCTGAAATAGGTTA.............................................................. 22 1 1 42.00 42 8 4 28 2 0 0
......................................................................................................TAGCTCCATCTGAAATCGGTTA.............................................................. 22 1 1 41.00 41 7 5 20 9 0 0
......................................................................................................TACCACCATCTGAAATCGGTT............................................................... 21 1 1 41.00 41 22 14 4 1 0 0
......................................................................................................TATCACCATCTGAAATCGGTT............................................................... 21 1 1 39.00 39 18 16 5 0 0 0
......................................................................................................TAGCACCATCTGAAATCGTTT............................................................... 21 1 1 36.00 36 13 12 10 1 0 0
......................................................................................................TAGCACCATCTGAAATCGGTAT.............................................................. 22 2 1 36.00 36 6 11 11 6 2 0
......................................................................................................TAGCACCATCTGAAATCGGTTTA............................................................. 23 2 1 35.00 35 12 6 10 5 1 1
......................................................................................................TAGCACCATCTGAAATCGTTA............................................................... 21 2 1 33.00 33 1 4 23 4 1 0
......................................................................................................TAGGACCATCTGAAATCGGTTA.............................................................. 22 1 1 33.00 33 4 5 22 2 0 0
................................................................ACTGATTTCTTTTGGTGTTCAGAGT................................................................................................. 25 0 1 33.00 33 22 11 0 0 0 0
......................................................................................................TAGCACCATCTGTAATCGGTT............................................................... 21 1 1 33.00 33 14 12 4 3 0 0
......................................................................................................TAGCACCATCTGAAATCGATTA.............................................................. 22 1 1 32.00 32 7 8 14 3 0 0
................................................................ACTGATTTCTTTTGGTGTTCAGAGA................................................................................................. 25 1 1 30.00 30 19 11 0 0 0 0
......................................................................................................TAGCACCTTCTGAAATCGGTT............................................................... 21 1 1 30.00 30 13 16 0 1 0 0
......................................................................................................TAGCACTATCTGAAATCGGTTAA............................................................. 23 2 1 29.00 29 3 1 16 9 0 0
.......................................................................................................AGCACCATCTGAAATCGGTTAA............................................................. 22 1 1 29.00 29 9 4 12 4 0 0
......................................................................................................TAGCACCATCAGAAATCGGTT............................................................... 21 1 1 29.00 29 13 14 2 0 0 0
......................................................................................................TAGCACCATCTGATATCGGTTA.............................................................. 22 1 1 29.00 29 5 1 20 3 0 0
......................................................................................................TAGCACCATCAGAAATCGGTTA.............................................................. 22 1 1 28.00 28 6 7 12 3 0 0
......................................................................................................TAGCTCCATCTGAAATCGGTT............................................................... 21 1 1 28.00 28 9 16 2 1 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTAAT............................................................ 24 2 1 28.00 28 8 12 4 2 2 0
......................................................................................................TAGCACCATCTGAAATCGATT............................................................... 21 1 1 28.00 28 15 9 3 1 0 0
......................................................................................................TAGCACAATCTGAAATCGGTTA.............................................................. 22 1 1 27.00 27 3 3 19 2 0 0
...................................................................................................ATTTAGCACCATCTGAAATCGGTT............................................................... 24 2 1 27.00 27 14 13 0 0 0 0
............................................................................................................CATCTGAAATCGGTTA.............................................................. 16 0 1 27.00 27 0 1 14 0 8 4
......................................................................................................TAGCACCCTCTGAAATCGGTT............................................................... 21 1 1 27.00 27 8 7 8 4 0 0
......................................................................................................TAGCACCAACTGAAATCGGTTA.............................................................. 22 1 1 26.00 26 6 3 16 1 0 0
......................................................................................................CAGCAGCATCTGAAATCGGTT............................................................... 21 2 1 26.00 26 14 12 0 0 0 0
.......................................................................................................AGCACCATCTGAAATCGGT................................................................ 19 0 1 26.00 26 8 16 1 0 1 0
......................................................................................................TAGCACCATCTCAAATCGGTTA.............................................................. 22 1 1 26.00 26 6 3 14 3 0 0
......................................................................................................TAGCATTATCTGAAATCGGTT............................................................... 21 2 4 25.50 102 5 3 67 27 0 0
......................................................................................................TAGCACCATCTGAATTCGGTT............................................................... 21 1 1 25.00 25 12 11 2 0 0 0
............................................................................................................CATCTGAAATCGGTT............................................................... 15 0 2 25.00 50 11 3 0 0 21 15
.......................................................................................................AGCACCATCTGAAATCGGTTT.............................................................. 21 1 1 25.00 25 5 2 14 4 0 0
.....................................................................................................CTAGCACTATCTGAAATCGGTT............................................................... 22 1 1 25.00 25 5 4 8 8 0 0
......................................................................................................TTGCACCATCTGAAATCGGTTA.............................................................. 22 1 1 24.00 24 5 9 9 1 0 0
.....................................................................................................CTAGCATCATCTGAAATCGGTT............................................................... 22 1 1 24.00 24 10 4 7 3 0 0
.....................................................................................................CTAGCACCATCCGAAATCGGTT............................................................... 22 1 1 24.00 24 12 11 0 0 1 0
................................................................ACTGATTTCTTTTGGTGTTCAGAG.................................................................................................. 24 0 1 23.00 23 10 13 0 0 0 0
......................................................................................................TAGCACCATCTGAAATCTGTT............................................................... 21 1 1 23.00 23 15 4 3 1 0 0
.......................................................................................................AGCACCATCTGAAATCGGTTAT............................................................. 22 0 1 23.00 23 5 4 9 5 0 0
......................................................................................................TAGCACCATCTGAAATAGGTT............................................................... 21 1 1 22.00 22 11 7 4 0 0 0
......................................................................................................TAGCACCATCTGAATTCGGTTA.............................................................. 22 1 1 22.00 22 5 2 13 2 0 0
......................................................................................................TAGAACCATCTGAAATCGGTTA.............................................................. 22 1 1 21.00 21 3 1 15 2 0 0
.....................................................................................................CTAGCACCATCTGGAATCGGTT............................................................... 22 1 1 21.00 21 8 11 1 1 0 0
.....................................................................................................GTAGCACCATCTGAAATCGGTT............................................................... 22 1 1 21.00 21 6 15 0 0 0 0
......................................................................................................GAGCACCATCTGAAATCGGTT............................................................... 21 1 1 20.00 20 7 10 3 0 0 0
................................................................ACTGATTTCTTTTGGTGTTC...................................................................................................... 20 0 1 20.00 20 13 5 1 0 1 0
......................................................................................................TAGCACAATCTGAAATCGGTT............................................................... 21 1 1 19.00 19 12 5 1 1 0 0
......................................................................................................TAGCACCATCGGAAATCGGTT............................................................... 21 1 1 19.00 19 10 6 3 0 0 0
.....................................................................................................CTAGCACCATCTGAAATCGGTTC.............................................................. 23 1 1 19.00 19 6 8 0 2 2 1
......................................................................................................TAGCACCATCTCAAATCGGTT............................................................... 21 1 1 19.00 19 7 7 5 0 0 0
.....................................................................................................TTAGCACCATCTGAAATCGGTT............................................................... 22 1 1 19.00 19 11 8 0 0 0 0
......................................................................................................TTGCACCATCTGAAATCGGTT............................................................... 21 1 1 18.00 18 9 9 0 0 0 0
......................................................................................................TAGCACCATCGGAAATCGGTTA.............................................................. 22 1 1 18.00 18 2 3 12 1 0 0
......................................................................................................TAGCACGATCTGAAATCGGTT............................................................... 21 1 1 18.00 18 5 6 6 0 1 0
......................................................................................................TAGCATCATCTGAAATCGGTTAA............................................................. 23 2 1 18.00 18 1 0 14 3 0 0
.....................................................................................................CTAGCACCATCTGAGATCGGTT............................................................... 22 1 1 18.00 18 10 8 0 0 0 0
......................................................................................................TAGCACCATCTGAAATCGGAAA.............................................................. 22 2 1 18.00 18 0 3 1 0 8 6
......................................................................................................TAGAACCATCTGAAATCGGTT............................................................... 21 1 1 17.00 17 11 5 1 0 0 0
......................................................................................................TAGCACCATCTGAAATCGGAA............................................................... 21 2 1 17.00 17 3 5 0 0 7 2
.....................................................................................................CTAGCACCATCTGAAATCGGCT............................................................... 22 1 1 17.00 17 6 6 2 3 0 0
......................................................................................................TAGCACCAACTGAAATCGGTT............................................................... 21 1 1 17.00 17 10 5 1 1 0 0
......................................................................................................TAGCACCATCTTAAATCGGTT............................................................... 21 1 1 16.00 16 6 4 5 1 0 0
......................................................................................................TAGCACGATCTGAAATCGGTTA.............................................................. 22 1 1 16.00 16 1 1 13 1 0 0
......................................................................................................TAGCACCATCTGAAAACGGTT............................................................... 21 1 1 16.00 16 6 9 1 0 0 0
......................................................................................................TAGCACCATCTGAAAACGGTTA.............................................................. 22 1 1 15.00 15 5 2 7 1 0 0
......................................................................................................TAGCCCCATCTGAAATCGGTT............................................................... 21 1 1 15.00 15 1 1 10 3 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTATA............................................................ 24 0 1 15.00 15 6 5 4 0 0 0
......................................................................................................TAGCACCATCTGAAATCGCTTA.............................................................. 22 1 1 15.00 15 2 2 11 0 0 0
......................................................................................................TAGCACTATCTGAAATCGGTTT.............................................................. 22 2 1 15.00 15 2 0 10 3 0 0
......................................................................................................TAGCACCATCTGAAATCGA................................................................. 19 1 1 15.00 15 6 0 3 0 4 2
....................................................................................................TCTAGCACCATCTGAAATCGGT................................................................ 22 0 1 15.00 15 7 8 0 0 0 0
......................................................................................................TCGCACCATCTGAAATCGGTT............................................................... 21 1 1 15.00 15 8 6 1 0 0 0
......................................................................................................TAGCACCATCTGATATCGGTT............................................................... 21 1 1 15.00 15 5 8 0 2 0 0
......................................................................................................TAGCACCATATGAAATCGGTT............................................................... 21 1 2 14.50 29 16 10 3 0 0 0
......................................................................................................TAGCACCATCTGAAATGGGTTA.............................................................. 22 1 1 14.00 14 0 1 11 2 0 0
.....................................................................................................TTAGCACCATCTGAAATCGGTTA.............................................................. 23 1 1 14.00 14 2 3 6 3 0 0
......................................................................................................TAGCACCATCTGAAATCGTT................................................................ 20 1 1 14.00 14 7 4 2 1 0 0
......................................................................................................TAGGACCATCTGAAATCGGTT............................................................... 21 1 1 14.00 14 7 6 1 0 0 0
......................................................................................................TAGCACCATCTGACCTCGGTTA.............................................................. 22 2 1 14.00 14 0 0 12 2 0 0
..................................................................TGATTTCTTTTGGTGTTCAGA................................................................................................... 21 0 1 14.00 14 10 4 0 0 0 0
.....................................................................................................CTAGCACCATCTGAAGTCGGTT............................................................... 22 1 1 13.00 13 3 9 0 1 0 0
......................................................................................................TAGCACCATCTGAAATCGGTAAA............................................................. 23 2 1 13.00 13 2 1 1 6 2 1
.....................................................................................................GTAGCACCATCTGAAATCGGTTA.............................................................. 23 1 1 13.00 13 2 9 1 1 0 0
......................................................................................................TAGCACCATATGAAATCGGTTA.............................................................. 22 1 2 13.00 26 9 4 12 1 0 0
......................................................................................................TAGCACCATCTGAAATCGGG................................................................ 20 1 1 13.00 13 4 1 7 1 0 0
.....................................................................................................CTAGCACCATCTGAAATCGGTAA.............................................................. 23 1 1 12.00 12 3 1 4 4 0 0
.......................................................................................................AGCACCATCTGAAATCGG................................................................. 18 0 1 12.00 12 2 0 8 2 0 0
.....................................................................................................CTAGTACCATCTGAAATCGGTT............................................................... 22 1 1 12.00 12 6 4 2 0 0 0
.....................................................................................................CTAGCACCATCTAAAATCGGTT............................................................... 22 1 1 11.00 11 5 6 0 0 0 0
....................................................................................................CCTAGCACCATCTGAAATCGGTTA.............................................................. 24 1 1 11.00 11 5 6 0 0 0 0
.....................................................................................................CTGGCACCATCTGAAATCGGTT............................................................... 22 1 1 11.00 11 3 7 1 0 0 0
......................................................................................................TAGCACCATCTGAAATCGGCTT.............................................................. 22 2 1 11.00 11 2 0 7 2 0 0
......................................................................................................TAGCACCATCTGACATCGGTTAA............................................................. 23 2 1 11.00 11 0 0 8 3 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTACT............................................................ 24 2 1 11.00 11 7 4 0 0 0 0
....................................................................................................TCTAGCACCATCTGAAATCGGTT............................................................... 23 0 1 11.00 11 6 5 0 0 0 0
......................................................................................................TAGCACTATCTGAAATCGGT................................................................ 20 1 1 11.00 11 1 2 8 0 0 0
.....................................................................................................CTAGCACCACCTGAAATCGGTT............................................................... 22 1 1 11.00 11 3 6 1 1 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTATC............................................................ 24 1 1 11.00 11 4 6 1 0 0 0
......................................................................................................TAGCACCATCTGAACTCGGTTT.............................................................. 22 2 1 11.00 11 0 0 6 5 0 0
.....................................................................................................CTAGCACCATCTGAAATCGGTTG.............................................................. 23 1 1 10.00 10 2 3 4 0 1 0
.....................................................................................................CTAGCACCATCTGCAATCGGTT............................................................... 22 1 1 10.00 10 1 5 1 3 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTCA............................................................. 23 2 1 10.00 10 1 2 3 4 0 0
....................................................................................................CATAGCACCATCTGAAATCGGTT............................................................... 23 2 1 10.00 10 5 5 0 0 0 0
.....................................................................................................CTAGCACCATCTGAAATCAGTT............................................................... 22 1 1 10.00 10 5 5 0 0 0 0
....................................................................................................CATAGCACCATCTGAAATCGGTTA.............................................................. 24 2 1 10.00 10 5 4 0 1 0 0
.....................................................................................................CTAGCACCATCTGAAATCGGA................................................................ 21 1 1 10.00 10 4 3 0 0 2 1
......................................................................................................TAGCACCATCTGAAATC................................................................... 17 0 2 9.50 19 6 5 8 0 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTAAG............................................................ 24 2 2 9.50 19 2 3 1 0 8 5
......................................................................................................TAGCAACATCTGAAATCGGTTA.............................................................. 22 1 1 9.00 9 2 2 4 1 0 0
.....................................................................................................CTAGCACCATCTGAAATCGTTT............................................................... 22 1 1 9.00 9 3 3 2 0 1 0
......................................................................................................TAGCACCATCTGAAATCCGTTA.............................................................. 22 1 1 9.00 9 2 0 7 0 0 0
.....................................................................................................CTAACACCATCTGAAATCGGTT............................................................... 22 1 1 9.00 9 2 4 1 2 0 0
.....................................................................................................CTAGCACCATCTGAAACCGGTT............................................................... 22 1 1 9.00 9 5 3 0 1 0 0
.....................................................................................................CTAGCACCGTCTGAAATCGGTT............................................................... 22 1 1 9.00 9 3 5 0 0 0 1
......................................................................................................TAGCACCATCTGAAATGGGTT............................................................... 21 1 1 9.00 9 3 6 0 0 0 0
......................................................................................................TAGCACCATCTGAAATCGGGTT.............................................................. 22 2 1 9.00 9 2 2 4 1 0 0
...........................................................................................................CCATCTGAAATCGGTT............................................................... 16 0 2 8.50 17 1 0 0 0 9 7
......................................................................................................TAGCACCATGTGAAATCGGTT............................................................... 21 1 2 8.50 17 9 7 1 0 0 0
.....................................................................................................CTAGCACCATCTGAAATCGGGT............................................................... 22 1 1 8.00 8 1 5 1 1 0 0
...................................................................................................ATTTAGCACCATCTGAAATCGGTTA.............................................................. 25 2 1 8.00 8 3 5 0 0 0 0
.....................................................................................................CAAGCACCATCTGAAATCGGTT............................................................... 22 1 1 8.00 8 2 5 1 0 0 0
......................................................................................................TAGCACCATCTGCAATCGGGTA.............................................................. 22 2 1 8.00 8 0 0 7 1 0 0
.....................................................................................................CTAGCACCATCTGAAATCG.................................................................. 19 0 1 8.00 8 5 3 0 0 0 0
.........................................................................................................CACCATCTGAAATCGGTTA.............................................................. 19 0 1 8.00 8 0 1 5 2 0 0
......................................................................................................GAGCACCATCTGAAATCGGTTA.............................................................. 22 1 1 8.00 8 1 0 6 1 0 0
......................................................................................................CAGCAGCATCTGAAATCGGTTA.............................................................. 22 2 1 8.00 8 6 2 0 0 0 0
......................................................................................................TAGCACCATCTGAAATCGT................................................................. 19 1 1 8.00 8 1 1 4 0 1 1
.......................................................................................................AGCACCATCTGAAATCGGGTA.............................................................. 21 1 1 8.00 8 0 0 5 3 0 0
.......................................................................................................AGCACCATCTGAAATCGGTA............................................................... 20 1 1 8.00 8 2 5 1 0 0 0
.....................................................................................................CTAGCACCATCTGAAATTGGTT............................................................... 22 1 1 8.00 8 4 3 0 0 1 0
.......................................................................................................AGCACTATCTGAAATCGGTTA.............................................................. 21 1 1 8.00 8 0 1 5 2 0 0
......................................................................................................TAGCACCATCTGCAATCGGTTT.............................................................. 22 2 1 8.00 8 2 0 5 1 0 0
......................................................................................................TAGCACCATGTGAAATCGGTTA.............................................................. 22 1 2 7.50 15 1 5 7 2 0 0
.........................................................................................................TACCATCTGAAATCGGTTA.............................................................. 19 1 2 7.50 15 0 0 14 1 0 0
......................................................................................................TAGCATCATCTGAAATCGGTTAT............................................................. 23 1 1 7.00 7 0 0 4 3 0 0
.....................................................................................................CTAGCACCATCTGAAATCGGCTA.............................................................. 23 1 1 7.00 7 1 0 3 3 0 0
.....................................................................................................CTATCACCATCTGAAATCGGTT............................................................... 22 1 1 7.00 7 2 4 1 0 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTAAC............................................................ 24 2 1 7.00 7 5 0 1 1 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTGA............................................................. 23 2 1 7.00 7 1 1 0 0 4 1
......................................................................................................TAGCACCATCTGAAATCGGTTCT............................................................. 23 1 1 7.00 7 1 1 4 1 0 0
.....................................................................................................CTAGCATTATCTGAAATCGGTT............................................................... 22 2 1 7.00 7 1 0 3 3 0 0
......................................................................................................TAGCAACATCTGAAATCGGTT............................................................... 21 1 1 7.00 7 3 3 0 1 0 0
......................................................................................................TAGCACCATCTGAAAGCGGTTA.............................................................. 22 1 1 7.00 7 0 1 6 0 0 0
.............................................................................................................ATCTGAAATCGGTTA.............................................................. 15 0 2 7.00 14 7 0 6 0 0 1
......................................................................................................TAGCACTATCTGAAATCGGTTAT............................................................. 23 1 1 7.00 7 0 0 6 1 0 0
.....................................................................................................CTAGCACCATCTGAAATCGGTTTT............................................................. 24 1 1 7.00 7 3 3 1 0 0 0
......................................................................................................CAGCACCATCTGAAATCGGT................................................................ 20 1 1 7.00 7 2 4 1 0 0 0
.....................................................................................................CTAGCGCCATCTGAAATCGGTT............................................................... 22 1 1 7.00 7 3 4 0 0 0 0
......................................................................................................TAGCACCATCTGAAA..................................................................... 15 0 14 6.57 92 28 17 43 4 0 0
.....................................................................................................CTAGCACCATCTGAAGTCGGTTA.............................................................. 23 1 1 6.00 6 2 4 0 0 0 0
......................................................................................................TAGCACCATCTGACATCGGTTT.............................................................. 22 2 1 6.00 6 0 1 3 2 0 0
................................................................ACTGATTTCTTTTGGTGTTCAGT................................................................................................... 23 1 1 6.00 6 2 4 0 0 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTAGT............................................................ 24 2 1 6.00 6 3 1 0 0 1 1
......................................................................................................TAGCACCATCTGAAATCCGTT............................................................... 21 1 1 6.00 6 4 1 0 1 0 0
......................................................................................................TAGCACCATCTGAAATCGGGTAA............................................................. 23 2 1 6.00 6 0 1 3 1 1 0
......................................................................................................TAGCACCATCCGAAATCGGTTT.............................................................. 22 2 1 6.00 6 3 1 1 1 0 0
.....................................................................................................CTACCACCATCTGAAATCGGTT............................................................... 22 1 1 6.00 6 0 5 1 0 0 0
......................................................................................................TAGCACCATCCGAAATCGGT................................................................ 20 1 1 6.00 6 4 2 0 0 0 0
.....................................................................................................CTAGCACCATCTGGAATCGGTTA.............................................................. 23 1 1 6.00 6 2 2 1 1 0 0
.....................................................................................................ATAGCACCATCTGAAATCGGTTAA............................................................. 24 2 1 6.00 6 0 0 3 3 0 0
......................................................................................................TGGCACCATCTGAAATCGGT................................................................ 20 1 1 6.00 6 3 3 0 0 0 0
......................................................................................................TAGCACTATCTGAAATCGG................................................................. 19 1 1 6.00 6 0 0 5 1 0 0
......................................................................................................TAGCACCATCTGCAATCGGTTAA............................................................. 23 2 1 6.00 6 0 0 5 1 0 0
......................................................................................................TAGCACCATCTGAAGTCGGGTA.............................................................. 22 2 1 6.00 6 0 0 6 0 0 0
.....................................................................................................CTAGTACCATCTGAAATCGGTTA.............................................................. 23 1 1 6.00 6 0 0 3 3 0 0
......................................................................................................TAGCATCATCTGAAATCGGT................................................................ 20 1 2 5.50 11 0 0 10 1 0 0
..................................................................................................ATTCTAGCACCATCTGAAATCGGTT............................................................... 25 1 1 5.00 5 1 4 0 0 0 0
.....................................................................................................CTAGCACCATCCGAAATCGGTTA.............................................................. 23 1 1 5.00 5 2 3 0 0 0 0
......................................................................................................TAGTACCATCTGAAATCGGTTT.............................................................. 22 2 1 5.00 5 1 2 0 2 0 0
......................................................................................................TAGCACCATCTGAACTCGGGTA.............................................................. 22 2 1 5.00 5 0 0 3 2 0 0
..........................................................................................................ACCATCTGAAATCGGTTAT............................................................. 19 0 1 5.00 5 0 0 5 0 0 0
.......................................................................................................TACACCATCTGAAATCGGTTA.............................................................. 21 2 1 5.00 5 1 1 3 0 0 0
......................................................................................................AAGCACCATCTGAAATCGGTTT.............................................................. 22 2 1 5.00 5 0 0 2 3 0 0
......................................................................................................TAGCACCATCTGAAATCGCTT............................................................... 21 1 1 5.00 5 2 3 0 0 0 0
......................................................................................................TAGCCCCATCTGCAATCGGTTA.............................................................. 22 2 1 5.00 5 0 0 4 1 0 0
....................................................................................................TATAGCACCATCTGAAATCGGT................................................................ 22 1 1 5.00 5 1 0 4 0 0 0
.....................................................................................................CTAGCACTATCTGAAATCGGTTA.............................................................. 23 1 1 5.00 5 0 1 4 0 0 0
......................................................................................................TAGCACCATCTGAAATCGGGTAT............................................................. 23 1 1 5.00 5 0 0 4 1 0 0
.....................................................................................................CTAGCACCATCTGAAATCGGTC............................................................... 22 1 1 5.00 5 3 1 0 1 0 0
...................................................................................................ATCTAGCACCATCTGAAATCGGTT............................................................... 24 1 1 5.00 5 2 3 0 0 0 0
.....................................................................................................CCAGCACCATCTGAAATCGGTT............................................................... 22 1 1 5.00 5 3 2 0 0 0 0
........................................................................................................GCACCATCTGAAATCGG................................................................. 17 0 1 5.00 5 4 1 0 0 0 0
......................................................................................................TAGCACCATCTGAACTCGGT................................................................ 20 1 1 5.00 5 0 1 3 1 0 0
.......................................................................................................AGCACCATCTGACATCGGTTA.............................................................. 21 1 1 5.00 5 0 0 3 2 0 0
......................................................................................................TATCACCATCTGAAATCGGTTT.............................................................. 22 2 1 5.00 5 0 0 4 1 0 0
......................................................................................................TAGCACCATCTGAAATCGGTTTC............................................................. 23 2 1 5.00 5 4 1 0 0 0 0
.....................................................................................................CTAGCACCATCTGACATCGGTT............................................................... 22 1 1 5.00 5 1 1 3 0 0 0
......................................................................................................TAGCACCATCTGAAATCGGTGA.............................................................. 22 1 1 5.00 5 0 0 3 1 1 0
......................................................................................................TAGCGTTATCTGAAATCGGTTA.............................................................. 22 3 2 4.50 9 0 0 8 1 0 0
.....................................................................................................CTAGCATCATCTGAAATCGGTTA.............................................................. 23 1 1 4.00 4 0 0 3 1 0 0
.......................................................................................................AGCATCATCTGAAATCGGTTA.............................................................. 21 1 1 4.00 4 0 0 3 1 0 0
......................................................................................................TAGCACCAGCTGAAATCGGTTA.............................................................. 22 1 1 4.00 4 1 0 1 2 0 0
......................................................................................................TAGCACCATCTGAACTCGGTTC.............................................................. 22 2 1 4.00 4 0 0 3 1 0 0
......................................................................................................TAGCACCATCTGAAATCGGC................................................................ 20 1 1 4.00 4 2 1 0 0 1 0
...........................................................................................................CCATCTGAAATCGGTTA.............................................................. 17 0 1 4.00 4 0 1 0 0 3 0
.....................................................................................................CTAGCACCATCTGAAATCAGTTA.............................................................. 23 1 1 4.00 4 2 1 0 1 0 0
......................................................................................................TAGCACCGTCTGAAATCGGTTT.............................................................. 22 2 1 4.00 4 1 1 1 1 0 0

Anti-sense strand reads

TAAACAAGTAGAGACCCGAGAAGCGTCAGGAGTGCAGGAGGAAGGGCACTGGGGAATCTCCTACTGACTAAAGAAAACCACAAGTCTCAGTTATATTAAAAGATCGTGGTAGACTTTAGCCAATATTACTAACCCCTTCTCGTGGCACGGTGGCTGATTGCTCTCTTTTATGTGACCCCTGGAAAC

***********************************************.((((.......((((((((((((...(((((((.((((...........)))))))))))...)))))))))))).......))))...*************************************************
Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary
SRR066810

testes
.......................CGTTAGGAGTGCAGGTGGA................................................................................................................................................ 19 2 9 0.22 2 2 0
......................GCGTTAGGAGTGCAGGTGGAT............................................................................................................................................... 21 3 10 0.20 2 1 1
......................GCGTTAGGAGTGCAGGTGG................................................................................................................................................. 19 2 14 0.07 1 1 0

Generated: 09/01/2015 at 11:30 AM