ID:

ssc-mir-2483

 Coordinate:

chrX:117608201-117608276 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.8

Sense Strand Reads

TTTTTTTCTGGGTACTTATGACAGGTCTAGATGACACCCAAATATGTGAGTGAAAAGTTCCGTCAACCATCCAGCTGTTTGGGGTGATGCAAACAAACATCTGGTTGGTTGAGAGAATTTTTTACTTAGTCTCTGGATGTTTTGGAGTCATTTAACAGGCTGAGGAATCTTAGCAT

*********************************************.((((((((((((((..(((((((.((((.((((((............)))))).)))).)))))))..))))))))))))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139075

testes		 SRR066810

testes		 SRR1274763

ovary		 SRR139076

testes		 SRR1274764

testes
............................................................CGTCAACCATCCAGCTGTTTGG.............................................................................................. 22 0 1 47.00 47 27 4 10 4 1 1
..............................................................................................AAACATCTGGTTGGTTGAGAGA............................................................ 22 0 1 44.00 44 29 5 4 4 2 0
...............................................................................................AACATCTGGTTGGTTGAGAGA............................................................ 21 0 1 42.00 42 29 5 3 4 1 0
............................................................CGTCAACCATCCAGCTGTTTG............................................................................................... 21 0 1 20.00 20 14 1 3 1 1 0
..........................................................TCCGTCAACCATCCAGCTGTTT................................................................................................ 22 0 1 15.00 15 5 4 3 3 0 0
............................................................CGTCAACCATCCAGCTGTTT................................................................................................ 20 0 1 6.00 6 4 2 0 0 0 0
...............................................................................................AACATCTGGTTGGTTGAGAGAA........................................................... 22 0 1 6.00 6 2 4 0 0 0 0
............................................................CGTCAACCATCCAGCTGTTTGGA............................................................................................. 23 1 1 6.00 6 3 0 2 1 0 0
...............................................................................................AACATCTGGTTGGTTGAGAG............................................................. 20 0 1 6.00 6 3 3 0 0 0 0
...............................................................................................AACATCTGGTTGGTTGAGAGT............................................................ 21 1 1 5.00 5 1 2 0 2 0 0
..............................................................................................AAACATCTGGTTGGTTGAGAG............................................................. 21 0 1 5.00 5 3 1 1 0 0 0
..............................................................................................AAACATCTGGTTGGTTGAGA.............................................................. 20 0 1 4.00 4 2 2 0 0 0 0
...............................................................................................AACATCTGGTTGGTTGAGA.............................................................. 19 0 1 3.00 3 2 0 1 0 0 0
..........................................................TCCGTCAACCATCCAGCTGTT................................................................................................. 21 0 1 2.00 2 0 1 0 1 0 0
..........................................................TCCGTCAACCATCCAGCTGTTTGT.............................................................................................. 24 1 1 2.00 2 1 0 1 0 0 0
..........................................................TCCGTCAACCATCCAGCTGTTTG............................................................................................... 23 0 1 2.00 2 1 0 0 1 0 0
............................................................CGTCAACCATCCAGCTGTT................................................................................................. 19 0 1 2.00 2 0 0 0 2 0 0
............................................................CGTCAACCATCCAGCTGTTTGT.............................................................................................. 22 1 1 2.00 2 1 0 1 0 0 0
............................................................CGTCAACCATCCAGCTGTTTGA.............................................................................................. 22 1 1 2.00 2 0 0 1 0 1 0
................................................................................................ACATCTGGTTGGTTGAGAGAAT.......................................................... 22 0 1 2.00 2 1 1 0 0 0 0
............................................................CGTCAACCATCCAGCTGTTTA............................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1
............................................................CGTCAACCATCCAGCTGTTTT............................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................AACATCTGGTTAGTTGAGAGA............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
............................................................CGTCAACCATCCAGCTGTTTGAA............................................................................................. 23 2 1 1.00 1 0 0 0 1 0 0
.............................................................GTCAACCATCCAGCTGTTT................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................AAACATCTCGTTGGTTGAGAGA............................................................ 22 1 1 1.00 1 0 0 0 0 0 1
...............................................................................................AACATCTGGTTGGTTGAGAGAAA.......................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................AAACATCTGGTTGGTTGAGAGT............................................................ 22 1 1 1.00 1 0 0 0 0 1 0
.............................................................GTCAACCATCCAGCTGTTTG............................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................AACATCTGGTTGGTTGAGAGAAT.......................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................AAACATCTGGTTGGTTGAGAGAA........................................................... 23 0 1 1.00 1 0 0 0 0 1 0
..........................................................TCCGTCAACCATCCAGCTG................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................AACATCTGGTTGGTTGAGAGAT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................AACATCTCGTTGGTTGAGAGA............................................................ 21 1 1 1.00 1 0 0 0 0 0 1
............................................................CATCAACCATCCAGCTGTTTG............................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................AACATCTGGTTGGTTGAGAC............................................................. 20 1 2 0.50 1 0 0 0 1 0 0
..............................................................................................AAACATCTGGTTGGCTGAGAGA............................................................ 22 1 2 0.50 1 0 0 1 0 0 0
..............................................................................................AAACATCTGGTTGGT................................................................... 15 0 7 0.14 1 0 0 0 1 0 0

Anti-sense strand reads

AAAAAAAGACCCATGAATACTGTCCAGATCTACTGTGGGTTTATACACTCACTTTTCAAGGCAGTTGGTAGGTCGACAAACCCCACTACGTTTGTTTGTAGACCAACCAACTCTCTTAAAAAATGAATCAGAGACCTACAAAACCTCAGTAAATTGTCCGACTCCTTAGAATCGTA

*********************************************.((((((((((((((..(((((((.((((.((((((............)))))).)))).)))))))..))))))))))))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:44 AM