ID:

ssc-mir-24-1

 Coordinate:

chr2:65582174-65582245 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature

  1. ssc-mir-24-2  chr10:31340341-31340362 -
  2. ssc-mir-24-1  chr2:65582223-65582244 +
star

Sense Strand Reads

CTCCCCTCCTGCCTGCCTATCCTACCACTGGGGAGGGGGGCCTCCCTGGGCTCTGCCTCCCGTGCCTACTGAGCTGAAACACAGTTGATTTGTGCAGACTGGCTCAGTTCAGCAGGAACAGGAGTCAAGCCCCCTTGGAGTCTGCTGCCCCCGCCTTCCTTGGGTTGGCCAA

**********************************************.(((((.((.((((.((.(((.(((((((((....(((((..........)))))..))))))))).))).)).)))).)))))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR1274764

testes		 SRR1274763

ovary		 SRR139076

testes
...................................................................................................TGGCTCAGTTCAGCAGGAACAG................................................... 22 0 2 135238.00 270476 140489 126974 2530 83 201 199
...................................................................................................TGGCTCAGTTCAGCAGGAACAGT.................................................. 23 1 2 70284.00 140568 70250 63857 5279 241 564 377
...................................................................................................TGGCTCAGTTCAGCAGGAAC..................................................... 20 0 2 46768.00 93536 46587 44081 562 1425 804 77
...................................................................................................TGGCTCAGTTCAGCAGGAACA.................................................... 21 0 2 10114.50 20229 10705 8831 383 137 134 39
...................................................................................................TGGCTCAGTTCAGCAGGAACAGA.................................................. 23 1 2 9318.50 18637 12395 6004 84 60 87 7
...................................................................................................TGGCTCAGTTCAGCAGGAACAGTT................................................. 24 2 2 6314.50 12629 6312 5886 388 10 13 20
....................................................................................................GGCTCAGTTCAGCAGGAACAGT.................................................. 22 1 2 2485.00 4970 2274 2490 196 0 2 8
...................................................................................................TGGCTCAGTTCAGCAGGAACAGTA................................................. 24 1 2 2413.50 4827 2493 2092 228 0 8 6
.............................................................GTGCCTACTGAGCTGAAACAGT......................................................................................... 22 2 2 1829.00 3658 1884 1774 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAA...................................................... 19 0 2 1753.50 3507 1852 1531 89 9 17 9
...................................................................................................TGGCTCAGTTCAGCAGGAACAGC.................................................. 23 1 2 1363.50 2727 1393 1310 18 1 3 2
.............................................................GTGCCTACTGAGCTGAAACAG.......................................................................................... 21 1 1 1328.00 1328 717 611 0 0 0 0
....................................................................................................GGCTCAGTTCAGCAGGAACAG................................................... 21 0 2 1294.00 2588 1258 1238 85 0 1 6
...................................................................................................TGGCTCAGTTCAGCAGGAAA..................................................... 20 1 2 1011.00 2022 1020 837 94 26 18 27
...................................................................................................TGGCTCAGTTCAGCAGGA....................................................... 18 0 2 991.00 1982 1070 865 39 4 3 1
...................................................................................................TGGCTCAGTTCAGCAGGAACAC................................................... 22 1 2 549.50 1099 514 561 21 0 1 2
...................................................................................................TGGCTCAGTTCAGCAGGAACAGG.................................................. 23 0 2 526.50 1053 724 296 20 4 7 2
..................................................................................................ATGGCTCAGTTCAGCAGGAACAG................................................... 23 1 2 478.50 957 466 489 2 0 0 0
..................................................................................................CTGGCTCAGTTCAGCAGGAACAG................................................... 23 0 2 462.50 925 509 379 30 2 0 5
....................................................................................................GGCTCAGTTCAGCAGGAAC..................................................... 19 0 2 347.50 695 337 338 16 3 1 0
..................................................................................................CTGGCTCAGTTCAGCAGGAAC..................................................... 21 0 2 307.50 615 356 192 4 26 34 3
...................................................................................................TGGCTCAGTTCAGCAGGAACAA................................................... 22 1 2 221.50 443 165 132 128 1 2 15
...................................................................................................TGGCTCAGTTCAGCAGGAACACT.................................................. 23 2 2 217.00 434 192 202 22 6 11 1
..................................................................................................ATGGCTCAGTTCAGCAGGAACAGT.................................................. 24 2 2 215.00 430 212 215 2 0 0 1
..................................................................................................CTGGCTCAGTTCAGCAGGA....................................................... 19 0 2 189.00 378 240 136 2 0 0 0
.....................................................................................................GCTCAGTTCAGCAGGAACAGTT................................................. 22 2 2 182.00 364 179 166 18 0 0 1
....................................................................................................GGCTCAGTTCAGCAGGAACAGTT................................................. 23 2 2 164.50 329 140 172 16 0 0 1
..................................................................................................CTGGCTCAGTTCAGCAGGAACAGT.................................................. 24 1 2 141.00 282 147 119 11 1 2 2
...................................................................................................TGACTCAGTTCAGCAGGAACAG................................................... 22 1 2 134.50 269 126 140 3 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAT................................................... 22 1 2 130.00 260 120 113 24 0 2 1
...................................................................................................TGGCTCAGTTCAGCAGGAACT.................................................... 21 1 2 128.50 257 110 106 4 32 2 3
...................................................................................................TGGCTCAGTTCAGCAGG........................................................ 17 0 3 125.00 375 240 126 9 0 0 0
.............................................................GTGCCTACTGAGCTGAAACAC.......................................................................................... 21 0 1 122.00 122 6 1 100 1 0 14
...................................................................................................TGGCTCAGTTTAGCAGGAACAG................................................... 22 1 2 112.00 224 140 83 1 0 0 0
.............................................................GTGCCTACTGAGCTGAAACACA......................................................................................... 22 0 1 103.00 103 3 7 72 8 3 10
..................................................................................................ATGGCTCAGTTCAGCAGGAAC..................................................... 21 1 2 99.50 199 87 112 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGTAT................................................ 25 2 2 95.50 191 105 75 10 0 1 0
...................................................................................................TGGCTTAGTTCAGCAGGAACAG................................................... 22 1 2 90.00 180 93 77 9 0 0 1
...................................................................................................TGGCTCAGTTCAGCAGGAT...................................................... 19 1 3 90.00 270 124 118 3 12 13 0
...................................................................................................CGGCTCAGTTCAGCAGGAACAG................................................... 22 1 2 86.00 172 100 71 1 0 0 0
...................................................................................................TAGCTCAGTTCAGCAGGAACAG................................................... 22 1 2 83.00 166 84 77 5 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAAT..................................................... 20 1 5 78.00 390 202 147 18 13 6 4
...................................................................................................TGGCTCAGTTCAGCAGGAACACA.................................................. 23 2 2 74.50 149 71 65 13 0 0 0
....................................................................................................GGCTCAGTTCAGCAGGAACA.................................................... 20 0 2 72.00 144 64 69 11 0 0 0
.............................................................GTGCCTACTGAGCTGAAACACAG........................................................................................ 23 0 1 71.00 71 7 3 49 5 1 6
...................................................................................................TGGCTCAGTTCGGCAGGAACAG................................................... 22 1 2 71.00 142 81 60 1 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGAA................................................. 24 1 2 70.50 141 88 46 1 0 5 1
.....................................................................................................GCTCAGTTCAGCAGGAACAGT.................................................. 21 1 2 67.50 135 49 54 30 1 0 1
....................................................................................................GGCTCAGTTCAGCAGGAACAGTA................................................. 23 1 2 66.50 133 69 53 11 0 0 0
..................................................................................................CTGGCTCAGTTCAGCAGGAACA.................................................... 22 0 2 65.50 131 82 36 8 0 3 2
...................................................................................................TGGCTCAGCTCAGCAGGAACAG................................................... 22 1 2 64.00 128 62 62 4 0 0 0
...................................................................................................TGGCTCGGTTCAGCAGGAACAG................................................... 22 1 2 62.00 124 63 60 1 0 0 0
...................................................................................................TGGCTCAGTTTAGCAGGAACAGT.................................................. 23 2 2 61.50 123 72 44 6 0 0 1
.............................................................GTGCCTACTGAGCTGAAACA........................................................................................... 20 0 1 61.00 61 23 27 9 0 0 2
...................................................................................................TGGCTCAGTTCAGCAGGAACAGAT................................................. 24 2 2 61.00 122 68 45 5 2 2 0
....................................................................................................GGCTCAGTTCAGCAGGAACAGA.................................................. 22 1 2 58.50 117 63 40 11 0 0 3
...................................................................................................CGGCTCAGTTCAGCAGGAACAGT.................................................. 23 2 2 58.00 116 53 56 7 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGTTT................................................ 25 3 2 57.00 114 58 45 9 0 0 2
...................................................................................................TGGCTCAGTTCAGCAGGAACGG................................................... 22 1 2 57.00 114 74 34 5 1 0 0
.............................................................GTGCCTACTGAGCTGAAAC............................................................................................ 19 0 1 56.00 56 28 27 1 0 0 0
...................................................................................................TGGTTCAGTTCAGCAGGAACAG................................................... 22 1 2 54.00 108 63 42 3 0 0 0
...................................................................................................TGGCTCAGTTCAGTAGGAACAG................................................... 22 1 2 53.00 106 60 37 7 1 0 1
...................................................................................................TGGCTTAGTTCAGCAGGAACAGT.................................................. 23 2 2 53.00 106 54 38 13 0 0 1
...................................................................................................TGGCTCAGTCCAGCAGGAACAG................................................... 22 1 2 51.00 102 59 42 0 0 0 1
...................................................................................................TGGCTCAGTTCAGCGGGAACAG................................................... 22 1 2 50.00 100 54 46 0 0 0 0
...................................................................................................TAGCTCAGTTCAGCAGGAACAGT.................................................. 23 2 2 49.00 98 44 45 9 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAAAA.................................................... 21 1 2 49.00 98 49 29 13 3 2 2
...................................................................................................TGGCCCAGTTCAGCAGGAACAG................................................... 22 1 2 47.50 95 51 44 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAATAG................................................... 22 1 2 47.50 95 46 44 5 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGAAACAG................................................... 22 1 2 46.50 93 58 33 2 0 0 0
...................................................................................................AGGCTCAGTTCAGCAGGAACAG................................................... 22 1 2 46.00 92 49 42 1 0 0 0
...................................................................................................TGGCTCCGTTCAGCAGGAACAG................................................... 22 1 2 45.50 91 50 35 5 0 0 1
..................................................................................................ATGGCTCAGTTCAGCAGGAACA.................................................... 22 1 2 43.50 87 38 49 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAAG..................................................... 20 1 3 43.33 130 71 34 10 7 8 0
...................................................................................................TGGCTCAGTTTAGCAGGAAC..................................................... 20 1 2 43.00 86 42 43 0 1 0 0
...................................................................................................TGGCTCAGTTCAGCAGGGACAG................................................... 22 1 2 43.00 86 48 35 2 0 0 1
...................................................................................................TGACTCAGTTCAGCAGGAACAGT.................................................. 23 2 3 40.33 121 56 61 3 0 0 1
...................................................................................................TGGCTCAGTTCAGCAGGAGCAG................................................... 22 1 3 38.00 114 57 53 4 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGTG................................................. 24 2 2 38.00 76 41 29 6 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACACC.................................................. 23 2 4 37.00 148 82 66 0 0 0 0
...................................................................................................AGGCTCAGTTCAGCAGGAACAGT.................................................. 23 2 2 35.00 70 35 28 7 0 0 0
...................................................................................................TGGCTTAGTTCAGCAGGAAC..................................................... 20 1 2 34.00 68 34 32 0 0 2 0
...................................................................................................TGGCTCGGTTCAGCAGGAACAGT.................................................. 23 2 2 34.00 68 36 26 5 0 1 0
...................................................................................................TGGCTCAGTTCAGCAGGAACATT.................................................. 23 2 2 33.50 67 27 21 14 1 1 3
...................................................................................................TGGCTCAGTTCAGCAGGAACAGTC................................................. 24 2 2 33.00 66 32 33 1 0 0 0
....................................................................................................GGCTCAGTTCAGCAGGAACAGC.................................................. 22 1 2 32.50 65 33 32 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGGT................................................. 24 1 2 32.50 65 31 25 7 1 1 0
...................................................................................................TGGCTCAGTTCAGCAGGAACGGT.................................................. 23 2 2 32.50 65 31 26 7 0 1 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGTAA................................................ 25 2 2 32.50 65 31 24 9 0 0 1
.............................................................GTGCCTACTGAGCTGAAACAGTT........................................................................................ 23 3 3 32.33 97 49 48 0 0 0 0
...................................................................................................TGGTTCAGTTCAGCAGGAACAGT.................................................. 23 2 2 32.00 64 34 25 5 0 0 0
...................................................................................................TGACTCAGTTCAGCAGGAAC..................................................... 20 1 3 31.00 93 47 44 0 1 1 0
...................................................................................................TGGCTCAGTTCAGCAGGCAC..................................................... 20 1 2 30.50 61 34 23 3 0 0 1
...................................................................................................TGGCTCAATTCAGCAGGAACAG................................................... 22 1 2 30.00 60 28 31 1 0 0 0
...................................................................................................TGGCTCCGTTCAGCAGGAACAGT.................................................. 23 2 2 29.50 59 19 23 15 0 0 2
...................................................................................................TGGCTCAGTTCCGCAGGAACAG................................................... 22 1 2 29.00 58 36 21 1 0 0 0
...................................................................................................TGGCTCAGTTCAACAGGAACAG................................................... 22 1 2 28.50 57 27 28 2 0 0 0
.....................................................................................................GCTCAGTTCAGCAGGAACAGG.................................................. 21 0 2 28.50 57 29 17 10 0 0 1
...................................................................................................TGGCTCAGTTCAGCAGGCACAGT.................................................. 23 2 2 28.50 57 19 26 11 0 0 1
.............................................................GTGCCTACTGAGCTGAAACACAGT....................................................................................... 24 0 1 28.00 28 15 2 4 3 2 2
...................................................................................................TGGCTCAGTTCGGCAGGAAC..................................................... 20 1 2 27.50 55 34 21 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACCG................................................... 22 1 2 27.00 54 24 23 6 0 0 1
...................................................................................................TGGCTCAGTTCAGCAGGAACG.................................................... 21 1 2 27.00 54 39 13 2 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACCGT.................................................. 23 2 2 26.50 53 18 13 21 0 0 1
.....................................................................................................GCTCAGTTCAGCAGGAACAG................................................... 20 0 2 26.50 53 27 24 2 0 0 0
............................................................CGTGCCTACTGAGCTGAAACAC.......................................................................................... 22 0 1 26.00 26 5 1 11 2 4 3
..................................................................................................CTGGCTCAGTTCAGCAGGAA...................................................... 20 0 2 26.00 52 34 13 5 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAGCAGT.................................................. 23 2 3 25.67 77 43 31 3 0 0 0
...................................................................................................TGGCTCAGTTCGGCAGGAACAGT.................................................. 23 2 2 25.50 51 25 22 4 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAATAGT.................................................. 23 2 2 25.50 51 26 23 2 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGCACAG................................................... 22 1 2 25.00 50 25 22 3 0 0 0
...................................................................................................TGGCTCAGTTCAGCCGGAACAGT.................................................. 23 2 2 24.00 48 19 12 17 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGGACAGT.................................................. 23 2 3 24.00 72 36 31 5 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGAAACAGT.................................................. 23 2 2 23.50 47 32 15 0 0 0 0
...................................................................................................CGGCTCAGTTCAGCAGGAAC..................................................... 20 1 2 23.50 47 22 23 0 1 0 1
...................................................................................................TGGCTCATTTCAGCAGGAACAG................................................... 22 1 2 23.00 46 28 18 0 0 0 0
...................................................................................................TGGCTCAGTTCAGTAGGAAC..................................................... 20 1 2 22.00 44 31 12 1 0 0 0
...................................................................................................TGGCTCAGTACAGCAGGAACAG................................................... 22 1 2 22.00 44 23 21 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAAGAACAG................................................... 22 1 2 21.50 43 21 22 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAAAAG................................................... 22 1 2 20.50 41 32 9 0 0 0 0
...................................................................................................TGGCTCAGCTCAGCAGGAACAGT.................................................. 23 2 4 20.25 81 36 40 4 1 0 0
...................................................................................................TGGTTCAGTTCAGCAGGAAC..................................................... 20 1 2 20.00 40 21 17 1 1 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGGA................................................. 24 0 2 20.00 40 26 13 1 0 0 0
...................................................................................................TGGCTCAGTTCAGCGGGAACAGT.................................................. 23 2 3 19.67 59 28 24 7 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGCA................................................. 24 1 2 19.50 39 20 16 3 0 0 0
...................................................................................................TGGCTCAGTTCAACAGGAACAGT.................................................. 23 2 2 19.00 38 20 17 0 0 1 0
.............................................................GTGCCTACTGAGCTGAAACAGA......................................................................................... 22 1 1 19.00 19 11 8 0 0 0 0
...................................................................................................TGGCTCCGTTCAGCAGGAAC..................................................... 20 1 2 19.00 38 20 17 0 0 1 0
...................................................................................................TGGCTCAGTTCAGTAGGAACAGT.................................................. 23 2 3 18.67 56 33 13 10 0 0 0
...................................................................................................TGGCTCAGTTTAGCAGGAACAGA.................................................. 23 2 2 18.50 37 27 10 0 0 0 0
...................................................................................................TGGCTCAGTTCATCAGGAACAG................................................... 22 1 2 18.50 37 20 15 2 0 0 0
...................................................................................................TAGCTCAGTTCAGCAGGAAC..................................................... 20 1 3 18.33 55 33 22 0 0 0 0
..............................................................TGCCTACTGAGCTGAAACAGT......................................................................................... 21 2 4 18.25 73 29 44 0 0 0 0
...................................................................................................TGGCTCAGATCAGCAGGAACAG................................................... 22 1 2 18.00 36 20 16 0 0 0 0
............................................................CGTGCCTACTGAGCTGAAACACAGT....................................................................................... 25 0 1 18.00 18 3 0 7 6 2 0
...................................................................................................TGGCACAGTTCAGCAGGAACAG................................................... 22 1 2 18.00 36 21 14 1 0 0 0
.................................................................................................CATGGCTCAGTTCAGCAGGAACAG................................................... 24 2 2 17.50 35 19 16 0 0 0 0
...................................................................................................TGGGTCAGTTCAGCAGGAACAG................................................... 22 1 2 17.50 35 14 20 1 0 0 0
.....................................................................................................GCTCAGTTCAGCAGGAACAGGT................................................. 22 1 2 17.50 35 16 2 15 0 1 1
...................................................................................................TGGCCCAGTTCAGCAGGAAC..................................................... 20 1 3 17.00 51 30 20 1 0 0 0
...................................................................................................TGTCTCAGTTCAGCAGGAACAG................................................... 22 1 2 16.50 33 18 14 0 0 0 1
.....................................................................................................GCTCAGTTCAGCAGGAACAGTA................................................. 22 1 2 16.50 33 15 8 10 0 0 0
...................................................................................................TGGCTCAATTCAGCAGGAACAGT.................................................. 23 2 2 16.50 33 19 12 1 0 0 1
...................................................................................................TGGCCCAGTTCAGCAGGAACAGT.................................................. 23 2 3 16.00 48 19 23 5 0 0 1
...................................................................................................TGGCTAAGTTCAGCAGGAACAG................................................... 22 1 2 15.50 31 16 15 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCCGGAACAG................................................... 22 1 2 15.50 31 17 10 4 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGTAACAG................................................... 22 1 2 15.50 31 15 14 1 0 0 1
...................................................................................................TTGCTCAGTTCAGCAGGAACAG................................................... 22 1 2 15.00 30 21 8 1 0 0 0
..................................................................................................ATGGCTCAGTTCAGCAGGAACAGTT................................................. 25 3 2 15.00 30 14 16 0 0 0 0
...................................................................................................TCGCTCAGTTCAGCAGGAACAG................................................... 22 1 2 14.50 29 13 15 1 0 0 0
...................................................................................................TGGCTCAGTTCAACAGGAAC..................................................... 20 1 2 14.50 29 17 12 0 0 0 0
...................................................................................................TGGGTCAGTTCAGCAGGAACAGT.................................................. 23 2 2 14.50 29 12 13 4 0 0 0
...................................................................................................AGGCTCAGTTCAGCAGGAAC..................................................... 20 1 2 14.00 28 15 13 0 0 0 0
...................................................................................................TGGCTCAGTTGAGCAGGAACAG................................................... 22 1 2 14.00 28 15 11 2 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACTG................................................... 22 1 2 14.00 28 19 9 0 0 0 0
...................................................................................................TGGCTCAGTTCTGCAGGAACAG................................................... 22 1 2 14.00 28 16 12 0 0 0 0
...................................................................................................TGGCTGAGTTCAGCAGGAACAG................................................... 22 1 2 13.50 27 11 16 0 0 0 0
...................................................................................................TGGCTCGGTTCAGCAGGAAC..................................................... 20 1 2 13.50 27 14 13 0 0 0 0
...................................................................................................TGCCTCAGTTCAGCAGGAACAG................................................... 22 1 2 13.00 26 14 12 0 0 0 0
............................................................CGTGCCTACTGAGCTGAAACACA......................................................................................... 23 0 1 13.00 13 3 2 2 4 2 0
...................................................................................................TGGCTCAGTCCAGCAGGAACAGT.................................................. 23 2 3 12.67 38 25 9 3 0 0 1
................................................................................................ATTTGGCTCAGTTCAGCAGGAACAG................................................... 25 3 2 12.50 25 14 11 0 0 0 0
..................................................................................................CTGGCTCAGTTCAGCAGGAACAGA.................................................. 24 1 2 12.50 25 17 8 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAAGA.................................................... 21 1 2 12.50 25 14 9 2 0 0 0
...................................................................................................TGGCTCAGTCCAGCAGGAAC..................................................... 20 1 2 12.50 25 13 12 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGTTA................................................ 25 3 2 12.50 25 12 12 1 0 0 0
...................................................................................................TGGCTCAGTACAGCAGGAACAGT.................................................. 23 2 2 12.50 25 14 10 1 0 0 0
........................................................................................................CAGTTCAGCAGGAACAG................................................... 17 0 2 12.50 25 20 5 0 0 0 0
...................................................................................................TGGCTCTGTTCAGCAGGAACAG................................................... 22 1 2 12.00 24 17 7 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAGC..................................................... 20 1 3 12.00 36 16 20 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAG...................................................... 19 1 4 11.75 47 25 17 3 1 0 1
...................................................................................................TGGCTCAGTTCAGCAGGAACAAT.................................................. 23 2 4 11.75 47 23 15 7 0 1 1
...................................................................................................TGGCTCAGTTCAGCAGGAACAGCT................................................. 24 2 2 11.50 23 10 12 1 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGAAAC..................................................... 20 1 3 11.33 34 18 16 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCACGAACAG................................................... 22 1 2 11.00 22 8 14 0 0 0 0
...................................................................................................GGGCTCAGTTCAGCAGGAACAG................................................... 22 1 2 11.00 22 12 9 0 0 0 1
...................................................................................................TGGCTCAGTTCAGCAGGATCAG................................................... 22 1 2 11.00 22 10 11 1 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGGAC..................................................... 20 1 3 10.67 32 14 16 2 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGACCAG................................................... 22 1 2 10.50 21 13 6 2 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAAG.................................................. 23 1 2 10.50 21 11 8 0 0 1 1
....................................................................................................GGCTCAGTTCAGCAGGAACAGG.................................................. 22 0 2 10.50 21 16 4 1 0 0 0
...................................................................................................TGTCTCAGTTCAGCAGGAACAGT.................................................. 23 2 2 10.50 21 14 7 0 0 0 0
...................................................................................................TGGCTCAGTTCCGCAGGAACAGT.................................................. 23 2 3 10.33 31 17 8 5 0 0 1
...................................................................................................TGGCTCAGTTAAGCAGGAACAG................................................... 22 1 2 10.00 20 12 7 0 1 0 0
...................................................................................................TGGCTCAGTTCAGCAAGAACAGT.................................................. 23 2 2 10.00 20 11 9 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGCAACAG................................................... 22 1 2 10.00 20 13 7 0 0 0 0
..................................................................................................ATGGCTCAGTTCAGCAGGAACAGA.................................................. 24 2 2 9.50 19 9 10 0 0 0 0
...................................................................................................TGACTCAGTTCAGCAGGAACA.................................................... 21 1 2 9.50 19 9 10 0 0 0 0
....................................................................................................GGCTCAGTTCAGCAGGAA...................................................... 18 0 2 9.50 19 8 10 1 0 0 0
.....................................................................................................GCTCAGTTCAGCAGGAACAGA.................................................. 21 1 2 9.50 19 9 3 6 1 0 0
...................................................................................................TGGCACAGTTCAGCAGGAACAGT.................................................. 23 2 2 9.50 19 8 11 0 0 0 0
...................................................................................................TGGCTCAGTTCCGCAGGAAC..................................................... 20 1 2 9.50 19 9 9 1 0 0 0
.............................................................GTGCCTACTGAGCTGAAACACAA........................................................................................ 23 1 1 9.00 9 1 0 7 0 0 1
...................................................................................................TGGCTCAGTTCAGCAAGAAC..................................................... 20 1 2 9.00 18 9 9 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCACGAACAGT.................................................. 23 2 2 9.00 18 9 9 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGATC..................................................... 20 1 2 9.00 18 5 12 0 0 0 1
...................................................................................................TGGCTCAGTTCAGGAGGAACAG................................................... 22 1 2 9.00 18 9 7 2 0 0 0
..................................................................................................CTGGCTCAGTTCAGCAGGAACAGTT................................................. 25 2 2 9.00 18 8 10 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCTGGAACAG................................................... 22 1 3 9.00 27 12 14 1 0 0 0
....................................................................................................TGCTCAGTTCAGCAGGAACAGT.................................................. 22 2 2 9.00 18 8 9 0 0 0 1
...................................................................................................TGGCTCAGTTCATCAGGAACAGT.................................................. 23 2 2 9.00 18 9 6 3 0 0 0
...................................................................................................TGGCTCAGTTTAGCAGGAACA.................................................... 21 1 2 9.00 18 12 6 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCGGGAAC..................................................... 20 1 3 8.67 26 15 11 0 0 0 0
...................................................................................................TGGCTCAGATCAGCAGGAACAGT.................................................. 23 2 2 8.50 17 8 9 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCATGAACAG................................................... 22 1 4 8.50 34 17 14 2 0 0 1
...................................................................................................TGGATCAGTTCAGCAGGAACAG................................................... 22 1 2 8.50 17 11 6 0 0 0 0
...................................................................................................TGGCTCATTTCAGCAGGAACAGT.................................................. 23 2 2 8.50 17 13 4 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACATA.................................................. 23 2 2 8.50 17 6 3 7 0 0 1
...................................................................................................TGGCTCAGTTGAGCAGGAAC..................................................... 20 1 2 8.50 17 11 6 0 0 0 0
...................................................................................................TTGCTCAGTTCAGCAGGAACAGT.................................................. 23 2 2 8.50 17 11 6 0 0 0 0
......................................................................................................CTCAGTTCAGCAGGAAC..................................................... 17 0 3 8.33 25 14 7 0 4 0 0
.........................................................................................................AGTTCAGCAGGAACAG................................................... 16 0 6 8.33 50 27 12 9 0 0 2
...................................................................................................TGGCTCCGTTCAGCAGGAACA.................................................... 21 1 2 8.00 16 12 3 0 0 0 1
...................................................................................................TGGCTCAGTTCAGCAGGAACAAA.................................................. 23 2 6 8.00 48 26 10 11 0 1 0
...................................................................................................TGGCTCAGTTCAGAAGGAACAG................................................... 22 1 2 8.00 16 8 7 1 0 0 0
...................................................................................................TGTCTCAGTTCAGCAGGAAC..................................................... 20 1 2 8.00 16 12 4 0 0 0 0
..................................................................................................TTGGCTCAGTTCAGCAGGAACAG................................................... 23 1 2 8.00 16 7 5 4 0 0 0
..................................................................................................ATGGCTCAGTTCAGCAGGAACAGTA................................................. 25 2 2 8.00 16 4 12 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGTTAT............................................... 26 3 2 8.00 16 10 5 1 0 0 0
...................................................................................................TGGCTCAGCTCAGCAGGAAC..................................................... 20 1 8 7.63 61 24 33 1 3 0 0
...................................................................................................TGGCTCAGATCAGCAGGAAC..................................................... 20 1 2 7.50 15 6 9 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAATA.................................................... 21 1 2 7.50 15 8 4 1 1 1 0
...................................................................................................TGGCTCAGTTGAGCAGGAACAGT.................................................. 23 2 2 7.50 15 5 8 2 0 0 0
....................................................................................................GGCTCAGTTCAGCAGGA....................................................... 17 0 2 7.50 15 13 1 1 0 0 0
.....................................................................................................GCTCAGTTCAGCAGGAACAGGA................................................. 22 0 2 7.50 15 6 1 7 0 0 1
...................................................................................................TGGCTCAGTTCACCAGGAACAG................................................... 22 1 4 7.25 29 16 12 1 0 0 0
...................................................................................................TGGCTCAGTACAGCAGGAAC..................................................... 20 1 2 7.00 14 10 4 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCACGAAC..................................................... 20 1 2 7.00 14 5 9 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGTACAGT.................................................. 23 2 2 7.00 14 6 6 1 0 0 1
...................................................................................................TGGCTCAGTTCAGCCGGAAC..................................................... 20 1 2 7.00 14 4 7 3 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGACC..................................................... 20 1 2 7.00 14 5 8 1 0 0 0
...................................................................................................CGGCTCAGTTCAGCAGGAACA.................................................... 21 1 2 7.00 14 8 5 1 0 0 0
............................................................CGTGCCTACTGAGCTGAAAC............................................................................................ 20 0 1 7.00 7 4 1 2 0 0 0
............................................................CGTGCCTACTGAGCTGAAACAGT......................................................................................... 23 2 1 7.00 7 5 2 0 0 0 0
...................................................................................................TGGCTCTGTTCAGCAGGAACAGT.................................................. 23 2 2 7.00 14 5 9 0 0 0 0
...................................................................................................TGGCTCAGTTAAGCAGGAACAGT.................................................. 23 2 2 7.00 14 8 6 0 0 0 0
.....................................................................................................GCTCAGTTCAGCAGGAACAGTC................................................. 22 2 2 6.50 13 6 5 1 0 1 0
...................................................................................................TGGCTTAGTTCAGCAGGAACA.................................................... 21 1 2 6.50 13 5 7 1 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGTACAG................................................... 22 1 2 6.50 13 6 7 0 0 0 0
...................................................................................................TGGGTCAGTTCAGCAGGAAC..................................................... 20 1 2 6.50 13 6 7 0 0 0 0
....................................................................................................TGCTCAGTTCAGCAGGAACAG................................................... 21 1 2 6.50 13 6 7 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGTAACAGT.................................................. 23 2 3 6.33 19 8 7 3 0 0 1
...................................................................................................TGGCTCAGTTCAGCAGGAAAAA................................................... 22 2 3 6.33 19 7 5 5 0 1 1
...................................................................................................TGGCTCAGTTCAGCAGGAC...................................................... 19 1 4 6.25 25 10 9 0 6 0 0
.............................................................GTGCCTACTGAGCTGAAACAT.......................................................................................... 21 1 1 6.00 6 3 2 1 0 0 0
...................................................................................................TGGCTCAATTCAGCAGGAAC..................................................... 20 1 2 6.00 12 5 7 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGAAT................................................ 25 2 2 6.00 12 9 3 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACGGA.................................................. 23 2 2 6.00 12 8 4 0 0 0 0
.................................................................................................CATGGCTCAGTTCAGCAGGAACAGT.................................................. 25 3 2 6.00 12 7 5 0 0 0 0
..................................................................................................ATGGCTCAGTTCAGCAGGAACAGC.................................................. 24 2 2 6.00 12 4 8 0 0 0 0
............................................................CGTGCCTACTGAGCTGAAACACAG........................................................................................ 24 0 1 6.00 6 1 0 2 1 2 0
............................................................CGTGCCTACTGAGCTGAAACA........................................................................................... 21 0 1 6.00 6 1 1 2 1 1 0
...................................................................................................TGGCTCATTTCAGCAGGAAC..................................................... 20 1 4 5.75 23 12 11 0 0 0 0
...................................................................................................TGCCTCAGTTCAGCAGGAACAGT.................................................. 23 2 3 5.67 17 6 10 1 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAAGAG................................................... 22 1 2 5.50 11 6 5 0 0 0 0
...................................................................................................GGGCTCAGTTCAGCAGGAAC..................................................... 20 1 2 5.50 11 3 8 0 0 0 0
...................................................................................................TGACTCAGTTCAGCAGGAACAGTT................................................. 24 3 4 5.50 22 4 18 0 0 0 0
...................................................................................................TGGCTCAGTTCGGCAGGAACAGA.................................................. 23 2 2 5.50 11 7 4 0 0 0 0
..................................................................................................CTGGCTCAGTTCAGCAGGAAA..................................................... 21 1 2 5.50 11 6 2 1 2 0 0
...................................................................................................TGGCTTAGTTCAGCAGGAACAGA.................................................. 23 2 2 5.50 11 9 2 0 0 0 0
.............................................................GTGCCTACTGAGCTGAAA............................................................................................. 18 0 2 5.50 11 7 2 2 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGTAAT............................................... 26 2 2 5.50 11 7 4 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGAAC................................................ 25 2 2 5.50 11 5 6 0 0 0 0
...................................................................................................TGGCTCACTTCAGCAGGAACAG................................................... 22 1 2 5.50 11 5 6 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGCAACAGT.................................................. 23 2 2 5.50 11 5 4 0 1 0 1
....................................................................................................GGCTCAGTTCAGCAGG........................................................ 16 0 4 5.25 21 16 5 0 0 0 0
..............................................................TGCCTACTGAGCTGAAACAG.......................................................................................... 20 1 1 5.00 5 2 3 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAAGAGT.................................................. 23 2 2 5.00 10 2 8 0 0 0 0
.....................................................................................................GCTCAGTTCAGCAGGAACAGC.................................................. 21 1 2 5.00 10 6 3 1 0 0 0
...................................................................................................TAGCTCAGTTCAGCAGGAACAGA.................................................. 23 2 2 5.00 10 7 3 0 0 0 0
......................................................................................................CTCAGTTCAGCAGGAACAG................................................... 19 0 2 5.00 10 7 3 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCTGGAACAGT.................................................. 23 2 3 5.00 15 4 11 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGATCAGT.................................................. 23 2 2 5.00 10 4 6 0 0 0 0
...................................................................................................TGGCTCAGTTCAGTAGGAACA.................................................... 21 1 2 5.00 10 6 2 1 1 0 0
...................................................................................................TGGATCAGTTCAGCAGGAACAGT.................................................. 23 2 2 5.00 10 6 3 1 0 0 0
...................................................................................................TGGCTCAGTTCAGAAGGAACAGT.................................................. 23 2 2 5.00 10 6 3 1 0 0 0
..................................................................................................CTGGCTCAGTTCAGCAGGAACAC................................................... 23 1 2 5.00 10 7 3 0 0 0 0
...................................................................................................TGGCTCAGTTCACCAGGAACAGT.................................................. 23 2 4 5.00 20 12 7 1 0 0 0
...................................................................................................TGGATCAGTTCAGCAGGAAC..................................................... 20 1 3 4.67 14 7 7 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAAAAGT.................................................. 23 2 3 4.67 14 9 3 0 2 0 0
...................................................................................................TGGCTCAGGTCAGCAGGAACAG................................................... 22 1 2 4.50 9 3 4 2 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGGACA.................................................... 21 1 2 4.50 9 7 2 0 0 0 0
...................................................................................................TGGTTCAGTTCAGCAGGAACAGA.................................................. 23 2 2 4.50 9 7 2 0 0 0 0
...................................................................................................CGGCTCAGTTCAGCAGGAACAGA.................................................. 23 2 2 4.50 9 7 1 1 0 0 0
...................................................................................................TAGCTCAGTTCAGCAGGAACA.................................................... 21 1 2 4.50 9 4 5 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACAGTAG................................................ 25 1 2 4.50 9 4 5 0 0 0 0
.....................................................................................................GCTCAGTTCAGCAGGAAC..................................................... 18 0 2 4.50 9 4 5 0 0 0 0
...................................................................................................TGGCTCAGTTCAGGAGGAACAGT.................................................. 23 2 2 4.50 9 4 5 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGACCAGT.................................................. 23 2 2 4.50 9 2 3 4 0 0 0
...................................................................................................TGGCTCGGTTCAGCAGGAACAGA.................................................. 23 2 2 4.50 9 6 2 1 0 0 0
...................................................................................................TCGCTCAGTTCAGCAGGAAC..................................................... 20 1 2 4.50 9 4 5 0 0 0 0
...................................................................................................TGGCTCCGTTCAGCAGGAACAGA.................................................. 23 2 2 4.50 9 8 1 0 0 0 0
...................................................................................................TGGTTCAGTTCAGCAGGAACA.................................................... 21 1 2 4.50 9 7 2 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACTGT.................................................. 23 2 3 4.33 13 4 8 1 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAACGA................................................... 22 2 3 4.33 13 8 4 1 0 0 0
...................................................................................................TGGCTCAGTTCAGCAGGAGCA.................................................... 21 1 3 4.33 13 4 8 1 0 0 0
...................................................................................................TGGCGCAGTTCAGCAGGAACAG................................................... 22 1 2 4.00 8 2 6 0 0 0 0
...................................................................................................TGACTCAGTTCAGCAGGAACAGA.................................................. 23 2 2 4.00 8 6 2 0 0 0 0
...................................................................................................TGGCTCAGTTCAGCGGGAACAGA.................................................. 23 2 2 4.00 8 3 5 0 0 0 0
....................................................................................................GGCTCAGTTCAGCAGGAACAA................................................... 21 1 2 4.00 8 1 0 7 0 0 0
...................................................................................................AGGCTCAGTTCAGCAGGAACA.................................................... 21 1 2 4.00 8 6 1 1 0 0 0

Anti-sense strand reads

GAGGGGAGGACGGACGGATAGGATGGTGACCCCTCCCCCCGGAGGGACCCGAGACGGAGGGCACGGATGACTCGACTTTGTGTCAACTAAACACGTCTGACCGAGTCAAGTCGTCCTTGTCCTCAGTTCGGGGGAACCTCAGACGACGGGGGCGGAAGGAACCCAACCGGTT

************************************.(((((.((.((((.((.(((.(((((((((....(((((..........)))))..))))))))).))).)).)))).)))))))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes
.................................................................................................TGACCGAGTCAAGTCGTCCTTG..................................................... 22 0 2 2.00 4 3 1
..................................................................................................GACCGAGTCAAGTCGTCCTTGT.................................................... 22 0 2 1.50 3 1 2
..................................................................................................GACCGAGTCAAGTCGTCCTTG..................................................... 21 0 2 0.50 1 0 1
.................................................CGAGATGGAGGGCACG........................................................................................................... 16 1 20 0.05 1 1 0

Generated: 09/01/2015 at 11:33 AM